Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1061440440

GenInfo (GI) Number: 0000000000

Download Results: 1061440440.PHASTER.zip

gi|00000000|ref|LYMZ01000021.1| Klebsiella pneumoniae strain 606B plasmid unnamed6 scf_22p, whole 88051, gc%: 53.61%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 0 regions are intact, 2 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
19Kbincomplete401010597-19660 info_outlinePHAGE_Microc_MaMV_DC_NC_029002(2)51.48%Show info_outline
221.8Kbincomplete301163635-85469 info_outlinePHAGE_Entero_N15_NC_001901(2)53.37%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|LYMZ01000021.1| Klebsiella pneumoniae strain 606B plasmid unnamed6 scf_22p, whole 88051, gc%: 53.61%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 10 CDS

#CDS PositionBLAST HitE-ValueSequence
110597..11169PHAGE_Ralsto_RSM3_NC_011399: hypothetical protein; A8V35_14120; phage(gi209901327)5.91e-26Showinfo_outline
211206..12597hypothetical protein; A8V35_141250.0Showinfo_outline
312630..13058PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; A8V35_14130; phage(gi169936026)1.20e-28Showinfo_outline
4complement(13377..14033)PHAGE_Microc_MaMV_DC_NC_029002: hypothetical protein; A8V35_14135; phage(gi971764756)5.37e-16Showinfo_outline
514401..14592PROPHAGE_Escher_CFT073: transposase insC; A8V35_14140; phage(gi26250372)1.46e-22Showinfo_outline
614602..14796PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; A8V35_14145; phage(gi17546153)2.76e-29Showinfo_outline
714835..15581PROPHAGE_Escher_CFT073: insertion element IS2 transposase InsD; A8V35_14150; phage(gi26249446)1.15e-120Showinfo_outline
8complement(15630..16487)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A8V35_14155; phage(gi100066)2.99e-55Showinfo_outline
9complement(16552..18282)cell division protein FtsI; A8V35_141600.0Showinfo_outline
10complement(18500..19660)PHAGE_Mycoba_Boomer_NC_011054: gp20; A8V35_14165; phage(gi194302967)7.77e-08Showinfo_outline

Region 2, total 13 CDS

#CDS PositionBLAST HitE-ValueSequence
163635..63647attL0.0Showinfo_outline
2complement(75795..76535)PHAGE_Bacill_phi4B1_NC_028886: site-specific recombinase; A8V35_14470; phage(gi971821285)2.88e-06Showinfo_outline
3complement(76602..77087)hypothetical protein; A8V35_144750.0Showinfo_outline
4complement(77172..77420)PHAGE_Erwini_PEp14_NC_016767: hypothetical protein; A8V35_14480; phage(gi374531851)3.70e-11Showinfo_outline
578205..79263hypothetical protein; A8V35_144850.0Showinfo_outline
679256..79465PHAGE_Burkho_KS14_NC_015273: gp43; A8V35_14490; phage(gi327198312)5.96e-11Showinfo_outline
779537..79821hypothetical protein; A8V35_144950.0Showinfo_outline
8complement(79961..80602)hypothetical protein; A8V35_145000.0Showinfo_outline
980838..81167PHAGE_Entero_N15_NC_001901: gp49; A8V35_14505; phage(gi9630516)6.92e-24Showinfo_outline
1081148..81429PHAGE_Entero_N15_NC_001901: gp48; A8V35_14510; phage(gi9630515)3.83e-15Showinfo_outline
11complement(81576..82109)PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; A8V35_14515; phage(gi431811050)4.83e-59Showinfo_outline
12complement(82142..83893)PROPHAGE_Xantho_33913: Tn5041 transposase; A8V35_14520; phage(gi21231545)1.32e-47Showinfo_outline
1385469..85481attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 88051 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download