Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1062719250

GenInfo (GI) Number: 0000000000

Download Results: 1062719250.PHASTER.zip

gi|00000000|ref|CP012570.1| Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-4.X, 111236, gc%: 48.95%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
1110.9Kbintact140114121-111036 info_outlinePHAGE_Salmon_SSU5_NC_018843(94)48.96%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP012570.1| Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-4.X, 111236, gc%: 48.95%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 117 CDS

#CDS PositionBLAST HitE-ValueSequence
1121..1218PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; AM278_26945; phage(gi410491479)7.76e-99Showinfo_outline
2complement(1670..1882)PHAGE_Salmon_SSU5_NC_018843: putative Cre-associated protein; AM278_26950; phage(gi410491478)1.19e-36Showinfo_outline
3complement(1882..2217)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_26955; phage(gi410491477)2.29e-46Showinfo_outline
4complement(2214..2393)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_26960; phage(gi410491476)3.11e-12Showinfo_outline
5complement(2580..2756)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_26965; phage(gi410491474)7.74e-17Showinfo_outline
6complement(2927..4003)PHAGE_Salmon_SSU5_NC_018843: putative RecA-like recombinase; AM278_26970; phage(gi410491470)0.0Showinfo_outline
7complement(4006..4272)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_26975; phage(gi410491469)2.07e-49Showinfo_outline
8complement(4272..5216)PHAGE_Salmon_SSU5_NC_018843: DNA polymerase I; AM278_26980; phage(gi410491468)0.0Showinfo_outline
9complement(5277..6284)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_26985; phage(gi410491467)0.0Showinfo_outline
10complement(6404..6835)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_26990; phage(gi410491466)2.15e-90Showinfo_outline
116986..7633hypothetical protein; AM278_269950.0Showinfo_outline
127738..8712PHAGE_Lactoc_TP901_1_NC_002747: ORF54; AM278_27000; phage(gi13786585)7.45e-05Showinfo_outline
13complement(8812..9255)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27005; phage(gi410491463)2.11e-77Showinfo_outline
14complement(9252..12770)PHAGE_Salmon_SSU5_NC_018843: DNA polymerase III alpha subunit; AM278_27010; phage(gi410491462)0.0Showinfo_outline
15complement(12951..14183)PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; AM278_27015; phage(gi410491460)0.0Showinfo_outline
16complement(14280..16559)PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; AM278_27020; phage(gi410491459)0.0Showinfo_outline
1716577..16592attL0.0Showinfo_outline
18complement(16676..16888)hypothetical protein; AM278_270250.0Showinfo_outline
1917161..17541PHAGE_Rhizob_RHEph10_NC_034248: hypothetical protein; AM278_27030; phage(gi100041)5.82e-10Showinfo_outline
20complement(17536..18636)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage integrase protein; AM278_27035; phage(gi169257266)5.68e-23Showinfo_outline
2118989..19345hypothetical protein; AM278_270400.0Showinfo_outline
22complement(19410..19820)PHAGE_Escher_HK639_NC_016158: hypothetical protein; AM278_27045; phage(gi356870618)3.88e-17Showinfo_outline
23complement(19830..20435)hypothetical protein; AM278_270500.0Showinfo_outline
24complement(20530..20775)PHAGE_Pseudo_OBP_NC_016571: putative glutaredoxin; AM278_27055; phage(gi371671381)3.93e-15Showinfo_outline
25complement(20906..21679)PHAGE_Erwini_PhiEaH1_NC_023610: PhoH; AM278_27060; phage(gi589287556)6.34e-119Showinfo_outline
2621920..23509hypothetical protein; AM278_270650.0Showinfo_outline
27complement(23801..23875)tRNA0.0Showinfo_outline
28complement(25067..25282)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27080; phage(gi410491456)1.41e-32Showinfo_outline
29complement(25266..25442)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27085; phage(gi410491455)3.07e-23Showinfo_outline
30complement(25442..26764)PHAGE_Salmon_SSU5_NC_018843: putative DNA ligase; AM278_27090; phage(gi410491454)0.0Showinfo_outline
31complement(26764..27012)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27095; phage(gi410491453)3.12e-16Showinfo_outline
32complement(27311..28099)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27100; phage(gi410491452)4.03e-93Showinfo_outline
3328388..29554hypothetical protein; AM278_271050.0Showinfo_outline
34complement(29597..30715)PHAGE_Salmon_SSU5_NC_018843: putative DNA primase; AM278_27110; phage(gi410491450)0.0Showinfo_outline
35complement(30869..32209)PHAGE_Salmon_SSU5_NC_018843: putative DNA helicase; AM278_27115; phage(gi410491449)0.0Showinfo_outline
36complement(32274..32999)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27120; phage(gi410491448)1.04e-162Showinfo_outline
37complement(33182..33592)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27125; phage(gi410491446)5.63e-28Showinfo_outline
38complement(33585..34019)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27130; phage(gi410491445)3.99e-28Showinfo_outline
39complement(34425..34787)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27140; phage(gi410491444)3.41e-63Showinfo_outline
40complement(34787..35452)PHAGE_Salmon_SSU5_NC_018843: putative ParA family protein; AM278_27145; phage(gi410491443)8.71e-132Showinfo_outline
4135839..36213PHAGE_Bacill_G_NC_023719: gp236; AM278_27150; phage(gi593777692)2.25e-05Showinfo_outline
42complement(36268..36483)PHAGE_Salmon_SSU5_NC_018843: putative Rz1 protein; AM278_27155; phage(gi410491439)1.19e-26Showinfo_outline
43complement(36416..36667)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27160; phage(gi410491438)5.95e-37Showinfo_outline
44complement(36670..37362)PHAGE_Salmon_SSU5_NC_018843: putative endolysin; AM278_27165; phage(gi410491437)1.20e-155Showinfo_outline
45complement(37376..37699)PHAGE_Salmon_SSU5_NC_018843: putative holin; AM278_27170; phage(gi410491436)3.68e-70Showinfo_outline
46complement(37795..39240)PHAGE_Klebsi_Sushi_NC_028774: tail fiber; AM278_27175; phage(gi971742192)1.64e-48Showinfo_outline
47complement(51478..52089)PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; AM278_27185; phage(gi410491429)2.10e-112Showinfo_outline
48complement(52077..52874)PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; AM278_27190; phage(gi410491428)2.92e-175Showinfo_outline
49complement(52867..53565)PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein L; AM278_27195; phage(gi410491427)3.79e-158Showinfo_outline
50complement(53652..53987)PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein M; AM278_27200; phage(gi410491426)5.19e-67Showinfo_outline
51complement(54031..58566)PHAGE_Salmon_SSU5_NC_018843: putative tail tape measure protein; AM278_27205; phage(gi410491425)0.0Showinfo_outline
52complement(58574..58807)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27210; phage(gi410491424)4.30e-46Showinfo_outline
53complement(58924..59241)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27215; phage(gi410491423)1.71e-64Showinfo_outline
54complement(59303..60049)PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; AM278_27220; phage(gi410491422)2.40e-146Showinfo_outline
55complement(60117..60509)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27225; phage(gi410491421)2.03e-63Showinfo_outline
56complement(60511..60984)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27230; phage(gi410491420)2.14e-103Showinfo_outline
57complement(60975..61319)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27235; phage(gi410491419)3.73e-73Showinfo_outline
58complement(61417..62250)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27240; phage(gi410491418)2.10e-178Showinfo_outline
59complement(62250..62684)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27245; phage(gi410491417)1.48e-84Showinfo_outline
60complement(62732..63160)PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; AM278_27250; phage(gi410491416)1.97e-40Showinfo_outline
61complement(63239..64117)PHAGE_Salmon_SSU5_NC_018843: putative major capsid protein; AM278_27255; phage(gi410491415)0.0Showinfo_outline
62complement(64144..65043)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27260; phage(gi410491414)0.0Showinfo_outline
63complement(65066..66640)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27265; phage(gi410491413)0.0Showinfo_outline
64complement(66673..67929)PHAGE_Salmon_SSU5_NC_018843: putative terminase large subunit; AM278_27270; phage(gi410491412)0.0Showinfo_outline
65complement(67932..68573)PHAGE_Salmon_SSU5_NC_018843: putative DNA-binding protein; AM278_27275; phage(gi410491411)1.27e-109Showinfo_outline
66complement(68749..69015)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27280; phage(gi410491540)8.05e-42Showinfo_outline
67complement(69025..69915)PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; AM278_27285; phage(gi410491539)0.0Showinfo_outline
68complement(69921..70175)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27290; phage(gi410491538)1.08e-54Showinfo_outline
69complement(70168..70806)PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; AM278_27295; phage(gi410491537)3.54e-151Showinfo_outline
70complement(70803..71471)PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; AM278_27300; phage(gi410491536)7.33e-145Showinfo_outline
71complement(71471..72175)PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; AM278_27305; phage(gi410491535)8.14e-146Showinfo_outline
7272235..73794PHAGE_Salmon_SSU5_NC_018843: putative helicase; AM278_27310; phage(gi410491534)0.0Showinfo_outline
7373797..74072PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27315; phage(gi410491533)1.25e-39Showinfo_outline
74complement(74123..74560)PHAGE_Salmon_SSU5_NC_018843: putative lipoprotein; AM278_27320; phage(gi410491532)3.69e-15Showinfo_outline
7574716..75246PHAGE_Salmon_SSU5_NC_018843: putative repressor of phase 1 flagellin; AM278_27325; phage(gi410491531)1.72e-92Showinfo_outline
7675880..76530PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27330; phage(gi410491530)4.00e-145Showinfo_outline
7776581..76784PHAGE_Salmon_SSU5_NC_018843: putative MIT family metal ion transporter CorA; AM278_27335; phage(gi410491529)2.75e-39Showinfo_outline
78complement(77376..77858)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27340; phage(gi410491527)2.44e-85Showinfo_outline
7978084..78272PHAGE_Burkho_KS14_NC_015273: gp43; AM278_27345; phage(gi327198312)1.51e-18Showinfo_outline
80complement(78300..78581)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27350; phage(gi410491525)1.22e-54Showinfo_outline
81complement(78708..79115)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27355; phage(gi410491524)2.04e-30Showinfo_outline
82complement(79235..79546)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27360; phage(gi410491523)1.58e-44Showinfo_outline
83complement(79683..79895)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27365; phage(gi410491522)1.17e-32Showinfo_outline
84complement(79908..80126)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27370; phage(gi410491521)3.13e-37Showinfo_outline
85complement(81677..82903)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27380; phage(gi410491517)1.48e-157Showinfo_outline
86complement(83074..83391)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27385; phage(gi410491515)5.26e-54Showinfo_outline
8784006..84752hypothetical protein; AM278_273900.0Showinfo_outline
88complement(85599..85958)hypothetical protein; AM278_273950.0Showinfo_outline
89complement(86205..86468)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27400; phage(gi410491513)5.01e-38Showinfo_outline
90complement(86620..87321)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27405; phage(gi410491506)1.19e-104Showinfo_outline
91complement(87410..89095)PHAGE_Salmon_SSU5_NC_018843: putative DNA modification methylase; AM278_27410; phage(gi410491505)0.0Showinfo_outline
92complement(89224..89802)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27415; phage(gi410491504)1.13e-73Showinfo_outline
93complement(89930..90085)PHAGE_Escher_Pollock_NC_027381: hypothetical protein; AM278_27420; phage(gi849254797)8.63e-10Showinfo_outline
94complement(90085..90510)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM278_27425; phage(gi100118)8.47e-78Showinfo_outline
9590537..90552attR0.0Showinfo_outline
96complement(90613..90801)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27430; phage(gi410491502)2.51e-12Showinfo_outline
97complement(90798..91076)hypothetical protein; AM278_274350.0Showinfo_outline
98complement(91508..92095)PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H; AM278_27440; phage(gi410491500)5.77e-118Showinfo_outline
99complement(92668..92901)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27445; phage(gi410491499)8.35e-44Showinfo_outline
100complement(93099..93692)PHAGE_Salmon_SSU5_NC_018843: putative N-6-adenine-methyltransferase; AM278_27450; phage(gi410491498)6.45e-125Showinfo_outline
101complement(93877..94710)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27455; phage(gi410491497)7.81e-103Showinfo_outline
102complement(94836..95393)PHAGE_Salmon_SSU5_NC_018843: putative exonuclease; AM278_27460; phage(gi410491496)3.48e-114Showinfo_outline
103complement(95403..95822)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27465; phage(gi410491495)9.91e-73Showinfo_outline
104complement(95886..96530)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27470; phage(gi410491494)1.45e-122Showinfo_outline
105complement(96530..97000)PHAGE_Salmon_SSU5_NC_018843: putative dihydrofolate reductase; AM278_27475; phage(gi410491493)3.39e-89Showinfo_outline
106complement(97003..97416)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27480; phage(gi410491492)1.10e-71Showinfo_outline
107complement(97418..98521)PHAGE_Salmon_SSU5_NC_018843: putative thymidylate synthase; AM278_27485; phage(gi410491491)0.0Showinfo_outline
108complement(98715..99590)PHAGE_Salmon_SSU5_NC_018843: putative phosphoribosyl-ATP pyrophosphohydrolase-like domain-containing protein; AM278_27490; phage(gi410491490)0.0Showinfo_outline
109complement(99668..100810)PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, beta subunit; AM278_27495; phage(gi410491489)0.0Showinfo_outline
110complement(100941..103244)PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, alpha subunit; AM278_27500; phage(gi410491488)0.0Showinfo_outline
111complement(103320..103889)PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H-like domain-containing protein; AM278_27505; phage(gi410491487)6.89e-128Showinfo_outline
112complement(103899..104645)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27510; phage(gi410491486)4.75e-105Showinfo_outline
113complement(104635..106551)PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 2; AM278_27515; phage(gi410491485)0.0Showinfo_outline
114complement(106548..106826)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27520; phage(gi410491484)1.54e-24Showinfo_outline
115complement(106781..107866)PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 1; AM278_27525; phage(gi410491483)0.0Showinfo_outline
116108519..110078PHAGE_Entero_ES18_NC_006949: gp19; AM278_27530; phage(gi62362232)2.62e-92Showinfo_outline
117complement(110392..111036)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM278_27535; phage(gi410491480)8.37e-127Showinfo_outline
Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-4.X
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 111236 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download