Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1083259907

GenInfo (GI) Number: 0000000000

Download Results: 1083259907.PHASTER.zip

gi|00000000|ref|NZ_LRHV01000001.1| Duganella sp. HH105 JAB7_contig000001, whole genome shotgun 930137, gc%: 64.45%

Download summary as .txt file: summary.txt file_download

Total: 3 prophage regions have been identified, of which 0 regions are intact, 3 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
110.3Kbincomplete1012345147-355484 info_outlinePHAGE_Bacill_G_NC_023719(2)63.81%Show info_outline
27.2Kbincomplete6011583366-590589 info_outlinePHAGE_Bacill_BCD7_NC_019515(4)66.14%Show info_outline
39.1Kbincomplete109793267-802371 info_outlinePHAGE_Burkho_phi1026b_NC_005284(1)64.81%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_LRHV01000001.1| Duganella sp. HH105 JAB7_contig000001, whole genome shotgun 930137, gc%: 64.45%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 12 CDS

#CDS PositionBLAST HitE-ValueSequence
1345147..345929PHAGE_Entero_vB_KleM_RaK2_NC_019526: putative nuclease; DUGA6_RS01315; phage(gi422937180)4.32e-38Showinfo_outline
2345932..346180hypothetical protein; DUGA6_RS013200.0Showinfo_outline
3346234..347958DUF4214 domain-containing protein; DUGA6_RS013250.0Showinfo_outline
4complement(347955..348914)PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; DUGA6_RS01330; phage(gi100150)3.98e-21Showinfo_outline
5complement(348961..349782)sensor histidine kinase; DUGA6_RS013350.0Showinfo_outline
6349926..350561PHAGE_Pseudo_PaMx25_NC_041953: clamp-loader subunit; DUGA6_RS01340; phage(gi100041)4.66e-19Showinfo_outline
7350564..351010PHAGE_Vibrio_VpKK5_NC_026610: 6-pyruvoyl tetrahydropterin synthase; DUGA6_RS01345; phage(gi764162219)2.68e-20Showinfo_outline
8351003..351506PHAGE_Gordon_GTE2_NC_015720: putative deaminase; DUGA6_RS01350; phage(gi338826893)4.22e-06Showinfo_outline
9351581..352525PHAGE_Mycoba_HINdeR_NC_021308: esterase/lipase; DUGA6_RS01355; phage(gi508179963)5.80e-09Showinfo_outline
10352537..353457muramoyltetrapeptide carboxypeptidase; DUGA6_RS013600.0Showinfo_outline
11353454..353741hypothetical protein; DUGA6_RS013650.0Showinfo_outline
12353883..355484PHAGE_Bacill_G_NC_023719: gp245; DUGA6_RS01370; phage(gi593777701)3.82e-17Showinfo_outline

Region 2, total 11 CDS

#CDS PositionBLAST HitE-ValueSequence
1583366..584925PHAGE_Bacill_BCD7_NC_019515: putative tail sheath protein; DUGA6_RS02155; phage(gi422936048)1.08e-72Showinfo_outline
2584938..585381PHAGE_Bacill_BCD7_NC_019515: putative tail tube protein 2; DUGA6_RS02160; phage(gi422936047)1.81e-12Showinfo_outline
3585399..585779hypothetical protein; DUGA6_RS021650.0Showinfo_outline
4585776..585955GpE family phage tail protein; DUGA6_RS021700.0Showinfo_outline
5585961..586389PHAGE_Bacill_BCD7_NC_019515: putative tail tube protein 2; DUGA6_RS02175; phage(gi422936047)2.74e-10Showinfo_outline
6586869..587420hypothetical protein; DUGA6_RS021800.0Showinfo_outline
7587432..588130LysM peptidoglycan-binding domain-containing protein; DUGA6_RS021850.0Showinfo_outline
8588108..589220PHAGE_Bacill_BCD7_NC_019515: hypothetical protein; DUGA6_RS02190; phage(gi422936041)5.73e-05Showinfo_outline
9589217..589852PHAGE_Bacill_SP_15_NC_031245: recombination endonuclease subunit; DUGA6_RS02195; phage(gi100052)7.85e-07Showinfo_outline
10589863..590159PHAGE_Prochl_P_HM2_NC_015284: PAAR; DUGA6_RS02200; phage(gi326783054)5.04e-05Showinfo_outline
11590179..590589PHAGE_Synech_syn9_NC_008296: baseplate wedge subunit; DUGA6_RS02205; phage(gi113200604)6.81e-12Showinfo_outline

Region 3, total 9 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(793267..795024)PHAGE_Bacill_G_NC_023719: gp350; DUGA6_RS03080; phage(gi593777806)1.54e-25Showinfo_outline
2795158..795877helix-turn-helix domain-containing protein; DUGA6_RS030850.0Showinfo_outline
3795874..796539Crp/Fnr family transcriptional regulator; DUGA6_RS030900.0Showinfo_outline
4complement(796550..796762)4-oxalocrotonate tautomerase family protein; DUGA6_RS030950.0Showinfo_outline
5complement(796774..797505)PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; DUGA6_RS03100; phage(gi971760361)3.52e-06Showinfo_outline
6797617..798531PHAGE_Burkho_phi1026b_NC_005284: gp58; DUGA6_RS03105; phage(gi38707948)1.69e-10Showinfo_outline
7complement(798540..799397)PHAGE_Burkho_phi1026b_NC_005284: gp58; DUGA6_RS03110; phage(gi38707948)2.79e-10Showinfo_outline
8799476..800834PHAGE_Mycoba_Enkosi_NC_028936: transporter-like protein; DUGA6_RS03115; phage(gi971757643)9.84e-36Showinfo_outline
9complement(800782..802371)PHAGE_Acinet_vB_AbaM_ME3_NC_041884: hypothetical protein; DUGA6_RS31800; phage(gi100082)4.24e-23Showinfo_outline
Duganella sp
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 930137 bps
Phages: 3
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download