Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1084318724

GenInfo (GI) Number: 0000000000

Download Results: 1084318724.PHASTER.zip

gi|00000000|ref|NZ_CP016383.1| Vibrio mimicus strain SCCF01 chromosome 1, complete sequence. 3213040, gc%: 46.61%

Download summary as .txt file: summary.txt file_download

Total: 3 prophage regions have been identified, of which 2 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
134.2Kbintact14055242304-276581 info_outlinePHAGE_Vibrio_12B12_NC_021070(37)50.20%Show info_outline
26.3Kbincomplete3082081972-2088349 info_outlinePHAGE_Lactob_Lj965_NC_005355(2)40.83%Show info_outline
339.3Kbintact150572338032-2377429 info_outlinePHAGE_Vibrio_12B12_NC_021070(37)49.50%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_CP016383.1| Vibrio mimicus strain SCCF01 chromosome 1, complete sequence. 3213040, gc%: 46.61%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 55 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(242304..242741)PHAGE_Aeromo_phiO18P_NC_009542: putative cI repressor; vm_RS01185; phage(gi148727133)1.43e-29Showinfo_outline
2243209..243466PHAGE_Escher_D108_NC_013594: Ner; vm_RS01190; phage(gi281199646)2.14e-22Showinfo_outline
3243478..245481PHAGE_Vibrio_12B12_NC_021070: transposase; vm_RS01195; phage(gi481019193)0.0Showinfo_outline
4245508..246452PHAGE_Vibrio_12B12_NC_021070: DNA transposition protein; vm_RS01200; phage(gi481019192)4.31e-175Showinfo_outline
5246460..246684PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01205; phage(gi481019191)7.83e-05Showinfo_outline
6246694..247110PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01210; phage(gi481019191)1.04e-07Showinfo_outline
7247120..247509PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01215; phage(gi481019190)6.58e-36Showinfo_outline
8247460..247831hypothetical protein; vm_RS214600.0Showinfo_outline
9247889..248503PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01225; phage(gi481019189)3.84e-115Showinfo_outline
10248513..248785PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01230; phage(gi481019188)9.83e-29Showinfo_outline
11248778..249014PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01235; phage(gi481019186)5.72e-29Showinfo_outline
12248998..249195PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01240; phage(gi481019185)9.05e-13Showinfo_outline
13249348..249542PHAGE_Yersin_PY54_NC_005069: hypothetical protein; vm_RS20825; phage(gi33770558)7.55e-11Showinfo_outline
14249545..249814PHAGE_Entero_phiEf11_NC_013696: asch domain protein; vm_RS01250; phage(gi282598726)8.13e-18Showinfo_outline
15249811..250341PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; vm_RS01255; phage(gi971741514)6.06e-39Showinfo_outline
16250341..250547hypothetical protein; vm_RS012600.0Showinfo_outline
17250628..250861PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01270; phage(gi481019182)1.55e-37Showinfo_outline
18250875..251114hypothetical protein; vm_RS012750.0Showinfo_outline
19251114..251659PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01280; phage(gi481019180)9.49e-75Showinfo_outline
20251649..252095hypothetical protein; vm_RS012850.0Showinfo_outline
21252174..252590PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01290; phage(gi481019179)1.95e-42Showinfo_outline
22252675..253223PHAGE_Acinet_LZ35_NC_031117: membrane-associated initiation of head vertex; vm_RS01295; phage(gi100034)7.53e-26Showinfo_outline
23253223..253510PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01300; phage(gi481019176)2.26e-23Showinfo_outline
24253486..254082PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01305; phage(gi481019175)3.88e-62Showinfo_outline
25254079..254309PHAGE_Vibrio_12B12_NC_021070: C4-type zinc finger protein; vm_RS01310; phage(gi481019174)8.41e-26Showinfo_outline
26254309..254602PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01315; phage(gi481019173)6.58e-43Showinfo_outline
27254618..254909PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01320; phage(gi481019172)3.78e-22Showinfo_outline
28254921..255500PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01325; phage(gi481019171)1.39e-18Showinfo_outline
29255501..257058PHAGE_Vibrio_12B12_NC_021070: portal protein; vm_RS01330; phage(gi481019169)3.47e-31Showinfo_outline
30257055..258606PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01335; phage(gi481019168)0.0Showinfo_outline
31258599..259417PHAGE_Vibrio_12B12_NC_021070: F protein; vm_RS01340; phage(gi481019167)1.63e-144Showinfo_outline
32259383..259631hypothetical protein; vm_RS013450.0Showinfo_outline
33259628..260141PHAGE_Citrob_vB_CfrM_CfP1_NC_031057: hypothetical protein; vm_RS01350; phage(gi100127)3.94e-07Showinfo_outline
34260138..260320hypothetical protein; vm_RS013550.0Showinfo_outline
35260292..260816PHAGE_Pseudo_phiPsa374_NC_023601: hypothetical protein; vm_RS01360; phage(gi589287268)1.42e-06Showinfo_outline
36260758..261132hypothetical protein; vm_RS013650.0Showinfo_outline
37262130..262634PHAGE_Vibrio_12B12_NC_021070: I protein; vm_RS20830; phage(gi481019166)1.01e-10Showinfo_outline
38262637..263536PHAGE_Vibrio_12B12_NC_021070: major head subunit; vm_RS01375; phage(gi481019165)0.0Showinfo_outline
39263603..264178PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01380; phage(gi481019162)6.09e-31Showinfo_outline
40264184..264618PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01385; phage(gi481019161)1.43e-90Showinfo_outline
41264618..265160PHAGE_Vibrio_12B12_NC_021070: phage virion morphogenesis protein; vm_RS01390; phage(gi481019160)4.78e-102Showinfo_outline
42265157..265756PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01395; phage(gi481019159)2.15e-90Showinfo_outline
43265770..265970PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01400; phage(gi481019158)8.71e-11Showinfo_outline
44265973..267461PHAGE_Vibrio_12B12_NC_021070: tail sheath protein; vm_RS01405; phage(gi481019157)2.19e-28Showinfo_outline
45267476..267829PHAGE_Vibrio_12B12_NC_021070: tail tube protein; vm_RS01410; phage(gi481019156)1.37e-49Showinfo_outline
46267829..268173PHAGE_Vibrio_12B12_NC_021070: extracellular solute-binding protein family 7 protein; vm_RS01415; phage(gi481019155)1.91e-61Showinfo_outline
47268282..270039PHAGE_Vibrio_12B12_NC_021070: phage tail tape measure protein; vm_RS01420; phage(gi481019154)0.0Showinfo_outline
48270051..271370PHAGE_Vibrio_12B12_NC_021070: DNA circulation protein; vm_RS01425; phage(gi481019153)0.0Showinfo_outline
49271363..272439PHAGE_Vibrio_12B12_NC_021070: P protein; vm_RS01430; phage(gi481019152)0.0Showinfo_outline
50272448..273050PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01435; phage(gi481019151)1.62e-100Showinfo_outline
51273053..273502PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01440; phage(gi481019150)6.94e-74Showinfo_outline
52273492..274559PHAGE_Vibrio_12B12_NC_021070: baseplate J-like protein; vm_RS01445; phage(gi481019149)0.0Showinfo_outline
53274544..275131PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS01450; phage(gi481019148)3.77e-87Showinfo_outline
54275131..276045PHAGE_Vibrio_vB_VchM_138_NC_019518: putative tail-fiber protein; vm_RS01455; phage(gi422936602)6.03e-28Showinfo_outline
55276045..276581PHAGE_Vibrio_vB_VchM_138_NC_019518: putative tail-fiber protein; vm_RS01460; phage(gi422936603)6.54e-40Showinfo_outline

Region 2, total 8 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(2081972..2083228)PHAGE_Salmon_vB_SosS_Oslo_NC_018279: error-prone lesion bypass DNA polymerase V; vm_RS09665; phage(gi399528790)3.16e-105Showinfo_outline
2complement(2083228..2083635)PHAGE_Cronob_ENT39118_NC_019934: protein umuD; vm_RS09670; phage(gi431811072)5.71e-21Showinfo_outline
32084003..2084134PHAGE_Vibrio_VfO3K6_NC_002362: putative transcription regulator; vm_RS20990; phage(gi9635475)9.79e-21Showinfo_outline
42084136..2084589IS4 family transposase; vm_RS209950.0Showinfo_outline
5complement(2084636..2085145)AAA family ATPase; vm_RS096800.0Showinfo_outline
6complement(2085142..2085546)PHAGE_Lactob_Lj965_NC_005355: hypothetical protein; vm_RS09685; phage(gi41179237)2.81e-34Showinfo_outline
7complement(2085524..2086588)PHAGE_Lactob_Lj965_NC_005355: hypothetical protein; vm_RS09690; phage(gi41179236)5.97e-89Showinfo_outline
8complement(2086907..2088349)PHAGE_Coryne_Poushou_NC_042139: membrane-associated initiation of head vertex; vm_RS09695; phage(gi100034)1.76e-54Showinfo_outline

Region 3, total 60 CDS

#CDS PositionBLAST HitE-ValueSequence
12338032..2338044attL0.0Showinfo_outline
22339088..2339573PHAGE_Staphy_StauST398_5_NC_023500: SsrA-binding protein; vm_RS10880; phage(gi588498309)5.44e-35Showinfo_outline
32339642..2340008tRNA0.0Showinfo_outline
42340174..2340560PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; vm_RS10890; phage(gi16130540)1.38e-35Showinfo_outline
5complement(2340823..2341248)PHAGE_Aeromo_phiO18P_NC_009542: putative cI repressor; vm_RS21025; phage(gi148727133)1.05e-29Showinfo_outline
62341378..2341390attR0.0Showinfo_outline
72341727..2341984PHAGE_Entero_Mu_NC_000929: DNA binding protein ner; vm_RS10900; phage(gi9633495)6.10e-22Showinfo_outline
82341996..2343999PHAGE_Vibrio_12B12_NC_021070: transposase; vm_RS10905; phage(gi481019193)0.0Showinfo_outline
92344026..2344970PHAGE_Vibrio_12B12_NC_021070: DNA transposition protein; vm_RS10910; phage(gi481019192)4.31e-175Showinfo_outline
102344978..2345202PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS10915; phage(gi481019191)7.83e-05Showinfo_outline
112345212..2345628PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS10920; phage(gi481019191)1.04e-07Showinfo_outline
122345638..2346027PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS10925; phage(gi481019190)6.58e-36Showinfo_outline
132345978..2346349hypothetical protein; vm_RS215000.0Showinfo_outline
142346407..2347021PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS10935; phage(gi481019189)3.84e-115Showinfo_outline
152347031..2347303PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS10940; phage(gi481019188)9.83e-29Showinfo_outline
162347296..2347532PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS10945; phage(gi481019186)5.72e-29Showinfo_outline
172347516..2347713PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS10950; phage(gi481019185)9.05e-13Showinfo_outline
182347866..2348060PHAGE_Yersin_PY54_NC_005069: hypothetical protein; vm_RS21030; phage(gi33770558)7.55e-11Showinfo_outline
192348063..2348332PHAGE_Entero_phiEf11_NC_013696: asch domain protein; vm_RS10960; phage(gi282598726)8.13e-18Showinfo_outline
202348329..2348859PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; vm_RS10965; phage(gi971741514)6.06e-39Showinfo_outline
212348859..2349065hypothetical protein; vm_RS109700.0Showinfo_outline
222349146..2349379PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS10980; phage(gi481019182)1.55e-37Showinfo_outline
232349393..2349632hypothetical protein; vm_RS109850.0Showinfo_outline
242349632..2350177PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS10990; phage(gi481019180)9.49e-75Showinfo_outline
252350167..2350613hypothetical protein; vm_RS109950.0Showinfo_outline
262350692..2351108PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS11000; phage(gi481019179)1.95e-42Showinfo_outline
272351193..2351741PHAGE_Acinet_LZ35_NC_031117: membrane-associated initiation of head vertex; vm_RS11005; phage(gi100034)7.53e-26Showinfo_outline
282351741..2352028PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS11010; phage(gi481019176)2.26e-23Showinfo_outline
292352004..2352600PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS11015; phage(gi481019175)3.88e-62Showinfo_outline
302352597..2352827PHAGE_Vibrio_12B12_NC_021070: C4-type zinc finger protein; vm_RS11020; phage(gi481019174)8.41e-26Showinfo_outline
312352827..2353126PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS11025; phage(gi481019173)1.04e-45Showinfo_outline
322353135..2353425PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS11030; phage(gi481019172)1.17e-54Showinfo_outline
332353437..2354018PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS11035; phage(gi481019171)1.05e-96Showinfo_outline
342354019..2355584PHAGE_Vibrio_12B12_NC_021070: portal protein; vm_RS11040; phage(gi481019169)0.0Showinfo_outline
352355581..2357140PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS11045; phage(gi481019168)0.0Showinfo_outline
362357133..2357951PHAGE_Vibrio_12B12_NC_021070: F protein; vm_RS11050; phage(gi481019167)1.63e-144Showinfo_outline
372357917..2358165hypothetical protein; vm_RS110550.0Showinfo_outline
382358162..2358674PHAGE_Escher_ECBP5_NC_027330: hypothetical protein; vm_RS11060; phage(gi849119808)9.57e-42Showinfo_outline
392358593..2359870PHAGE_Pseudo_phiPsa374_NC_023601: hypothetical protein; vm_RS11065; phage(gi589287268)4.73e-09Showinfo_outline
402360213..2361169PHAGE_Vibrio_12B12_NC_021070: I protein; vm_RS11070; phage(gi481019166)1.74e-121Showinfo_outline
412361172..2362071PHAGE_Vibrio_12B12_NC_021070: major head subunit; vm_RS11075; phage(gi481019165)0.0Showinfo_outline
422362138..2362713PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS11080; phage(gi481019162)6.09e-31Showinfo_outline
432362719..2363153PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS11085; phage(gi481019161)1.43e-90Showinfo_outline
442363153..2363695PHAGE_Vibrio_12B12_NC_021070: phage virion morphogenesis protein; vm_RS11090; phage(gi481019160)4.78e-102Showinfo_outline
452363692..2364291PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS11095; phage(gi481019159)2.15e-90Showinfo_outline
462364305..2364505PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS11100; phage(gi481019158)8.71e-11Showinfo_outline
472364508..2365996PHAGE_Vibrio_12B12_NC_021070: tail sheath protein; vm_RS11105; phage(gi481019157)2.19e-28Showinfo_outline
482366011..2366364PHAGE_Vibrio_12B12_NC_021070: tail tube protein; vm_RS11110; phage(gi481019156)1.37e-49Showinfo_outline
492366364..2366708PHAGE_Vibrio_12B12_NC_021070: extracellular solute-binding protein family 7 protein; vm_RS11115; phage(gi481019155)1.91e-61Showinfo_outline
502366817..2368601PHAGE_Vibrio_12B12_NC_021070: phage tail tape measure protein; vm_RS11120; phage(gi481019154)0.0Showinfo_outline
512368613..2369932PHAGE_Vibrio_12B12_NC_021070: DNA circulation protein; vm_RS11125; phage(gi481019153)0.0Showinfo_outline
522369925..2371001PHAGE_Vibrio_12B12_NC_021070: P protein; vm_RS11130; phage(gi481019152)0.0Showinfo_outline
532371001..2371615PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS11135; phage(gi481019151)3.74e-102Showinfo_outline
542371618..2372067PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS11140; phage(gi481019150)6.94e-74Showinfo_outline
552372057..2373124PHAGE_Vibrio_12B12_NC_021070: baseplate J-like protein; vm_RS11145; phage(gi481019149)0.0Showinfo_outline
562373109..2373696PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; vm_RS11150; phage(gi481019148)3.77e-87Showinfo_outline
572373696..2374610PHAGE_Vibrio_vB_VchM_138_NC_019518: putative tail-fiber protein; vm_RS11155; phage(gi422936602)2.89e-29Showinfo_outline
582374610..2375146PHAGE_Vibrio_vB_VchM_138_NC_019518: putative tail-fiber protein; vm_RS11160; phage(gi422936603)6.54e-40Showinfo_outline
592375232..2376095PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; vm_RS11165; phage(gi16130540)3.62e-113Showinfo_outline
60complement(2376389..2377429)PROPHAGE_Shewan_MR-1: ISSod13, transposase; vm_RS11170; phage(gi24375047)0.0Showinfo_outline
Vibrio mimicus strain SCCF01 chromosome 1, complete sequence
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 3213040 bps
Phages: 3
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download