Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1093006753

GenInfo (GI) Number: 0000000000

Download Results: 1093006753.PHASTER.zip

gi|00000000|ref|CP012427.1| Klebsiella pneumoniae strain KP5 plasmid pSg1-1, complete 126466, gc%: 49.25%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
1122.8Kbintact15012781-122949 info_outlinePHAGE_Salmon_SSU5_NC_018843(90)49.19%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP012427.1| Klebsiella pneumoniae strain KP5 plasmid pSg1-1, complete 126466, gc%: 49.25%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 130 CDS

#CDS PositionBLAST HitE-ValueSequence
181..959PHAGE_Salmon_SSU5_NC_018843: putative major capsid protein; ACG94_26590; phage(gi410491415)0.0Showinfo_outline
21038..1466PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; ACG94_26595; phage(gi410491416)5.53e-40Showinfo_outline
31514..1948PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26600; phage(gi410491417)1.80e-84Showinfo_outline
41948..2781PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26605; phage(gi410491418)8.75e-177Showinfo_outline
52879..3223PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26610; phage(gi410491419)3.73e-73Showinfo_outline
63214..3687PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26615; phage(gi410491420)3.82e-103Showinfo_outline
73689..4081PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26620; phage(gi410491421)2.03e-63Showinfo_outline
84149..4895PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; ACG94_26625; phage(gi410491422)2.40e-146Showinfo_outline
94957..5274PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26630; phage(gi410491423)1.71e-64Showinfo_outline
105391..5624PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26635; phage(gi410491424)4.30e-46Showinfo_outline
115632..10167PHAGE_Salmon_SSU5_NC_018843: putative tail tape measure protein; ACG94_26640; phage(gi410491425)0.0Showinfo_outline
1210211..10546PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein M; ACG94_26645; phage(gi410491426)2.32e-67Showinfo_outline
1310558..10574attL0.0Showinfo_outline
1410633..11331PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein L; ACG94_26650; phage(gi410491427)2.50e-158Showinfo_outline
1511324..12121PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; ACG94_26655; phage(gi410491428)2.92e-175Showinfo_outline
1612109..12720PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; ACG94_26660; phage(gi410491429)2.10e-112Showinfo_outline
1712737..24907PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; ACG94_26665; phage(gi410491430)0.0Showinfo_outline
1824960..26405PHAGE_Klebsi_Sushi_NC_028774: tail fiber; ACG94_26670; phage(gi971742192)5.12e-49Showinfo_outline
1926501..26824PHAGE_Salmon_SSU5_NC_018843: putative holin; ACG94_26675; phage(gi410491436)3.68e-70Showinfo_outline
2026838..27530PHAGE_Salmon_SSU5_NC_018843: putative endolysin; ACG94_26680; phage(gi410491437)3.65e-155Showinfo_outline
2127533..27784PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26685; phage(gi410491438)1.65e-36Showinfo_outline
2227717..27926PHAGE_Salmon_SSU5_NC_018843: putative Rz1 protein; ACG94_26690; phage(gi410491439)2.81e-26Showinfo_outline
2328201..28593PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26695; phage(gi410491441)2.96e-13Showinfo_outline
2428578..29327PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26700; phage(gi410491442)9.62e-19Showinfo_outline
2529512..30177PHAGE_Salmon_SSU5_NC_018843: putative ParA family protein; ACG94_26705; phage(gi410491443)3.92e-132Showinfo_outline
2630177..30539PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26710; phage(gi410491444)3.41e-63Showinfo_outline
2730585..31343PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26715; phage(gi410491447)0.0Showinfo_outline
2831537..32262PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26720; phage(gi410491448)1.26e-163Showinfo_outline
2932327..33667PHAGE_Salmon_SSU5_NC_018843: putative DNA helicase; ACG94_26725; phage(gi410491449)0.0Showinfo_outline
3033821..34939PHAGE_Salmon_SSU5_NC_018843: putative DNA primase; ACG94_26730; phage(gi410491450)0.0Showinfo_outline
31complement(34974..36140)hypothetical protein; ACG94_267350.0Showinfo_outline
3236429..37217PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26740; phage(gi410491452)2.37e-93Showinfo_outline
3337516..37764PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26745; phage(gi410491453)2.13e-16Showinfo_outline
3438044..38343PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26750; phage(gi410491458)1.02e-37Showinfo_outline
3539089..39163tRNA0.0Showinfo_outline
36complement(39566..40480)hypothetical protein; ACG94_267600.0Showinfo_outline
3740640..41416PHAGE_Erwini_PhiEaH1_NC_023610: PhoH; ACG94_26765; phage(gi589287556)6.78e-121Showinfo_outline
3841547..41792PHAGE_Pseudo_OBP_NC_016571: putative glutaredoxin; ACG94_26770; phage(gi371671381)2.83e-15Showinfo_outline
3942005..42907hypothetical protein; ACG94_267750.0Showinfo_outline
4043191..44291PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage integrase protein; ACG94_26780; phage(gi169257266)4.59e-23Showinfo_outline
41complement(44286..44666)PHAGE_Rhizob_RHEph10_NC_034248: hypothetical protein; ACG94_26785; phage(gi100041)5.82e-10Showinfo_outline
4244940..45152hypothetical protein; ACG94_267900.0Showinfo_outline
4345269..47548PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; ACG94_26795; phage(gi410491459)0.0Showinfo_outline
4447645..48877PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; ACG94_26800; phage(gi410491460)0.0Showinfo_outline
4552816..53310PHAGE_Salmon_SSU5_NC_018843: DNA polymerase III alpha subunit; ACG94_26815; phage(gi410491462)1.32e-104Showinfo_outline
4653307..53750PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26820; phage(gi410491463)1.64e-77Showinfo_outline
47complement(53850..54824)PHAGE_Lactoc_TP901_1_NC_002747: ORF54; ACG94_26825; phage(gi13786585)8.25e-05Showinfo_outline
48complement(54930..55577)hypothetical protein; ACG94_268300.0Showinfo_outline
4955729..56160PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26835; phage(gi410491466)1.08e-89Showinfo_outline
5056280..57287PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26840; phage(gi410491467)0.0Showinfo_outline
5157348..58292PHAGE_Salmon_SSU5_NC_018843: DNA polymerase I; ACG94_26845; phage(gi410491468)0.0Showinfo_outline
5258292..58558PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26850; phage(gi410491469)2.07e-49Showinfo_outline
5358561..59637PHAGE_Salmon_SSU5_NC_018843: putative RecA-like recombinase; ACG94_26855; phage(gi410491470)0.0Showinfo_outline
5459808..59984PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26860; phage(gi410491474)2.02e-16Showinfo_outline
5560171..60350PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26865; phage(gi410491476)3.48e-13Showinfo_outline
5660347..60682PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26870; phage(gi410491477)3.21e-46Showinfo_outline
5760682..60894PHAGE_Salmon_SSU5_NC_018843: putative Cre-associated protein; ACG94_26875; phage(gi410491478)1.19e-36Showinfo_outline
58complement(61325..62422)PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; ACG94_26880; phage(gi410491479)7.76e-99Showinfo_outline
5962743..63387PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26885; phage(gi410491480)8.37e-127Showinfo_outline
6063463..63957PHAGE_Salmon_SSU5_NC_018843: putative GNAT family acetyltransferase; ACG94_26890; phage(gi410491481)1.16e-81Showinfo_outline
6164145..65230PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 1; ACG94_26895; phage(gi410491483)0.0Showinfo_outline
6265185..65463PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26900; phage(gi410491484)2.60e-24Showinfo_outline
6365460..67376PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 2; ACG94_26905; phage(gi410491485)0.0Showinfo_outline
6467366..68112PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26910; phage(gi410491486)1.08e-109Showinfo_outline
6568122..68691PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H-like domain-containing protein; ACG94_26915; phage(gi410491487)5.44e-127Showinfo_outline
6668767..71070PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, alpha subunit; ACG94_26920; phage(gi410491488)0.0Showinfo_outline
6771201..72343PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, beta subunit; ACG94_26925; phage(gi410491489)0.0Showinfo_outline
6872421..73296PHAGE_Salmon_SSU5_NC_018843: putative phosphoribosyl-ATP pyrophosphohydrolase-like domain-containing protein; ACG94_26930; phage(gi410491490)0.0Showinfo_outline
6973490..74593PHAGE_Salmon_SSU5_NC_018843: putative thymidylate synthase; ACG94_26935; phage(gi410491491)0.0Showinfo_outline
7074595..75008PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26940; phage(gi410491492)2.15e-72Showinfo_outline
7175005..75481PHAGE_Salmon_SSU5_NC_018843: putative dihydrofolate reductase; ACG94_26945; phage(gi410491493)2.53e-91Showinfo_outline
7275481..76125PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26950; phage(gi410491494)2.35e-123Showinfo_outline
7376189..76608PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26955; phage(gi410491495)1.77e-73Showinfo_outline
7476618..77412PHAGE_Bacill_Moonbeam_NC_027374: hypothetical protein; ACG94_26960; phage(gi100129)5.59e-53Showinfo_outline
7577409..77957PHAGE_Salmon_SSU5_NC_018843: putative exonuclease; ACG94_26965; phage(gi410491496)4.41e-100Showinfo_outline
7678083..78916PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26970; phage(gi410491497)1.02e-101Showinfo_outline
7779101..79694PHAGE_Salmon_SSU5_NC_018843: putative N-6-adenine-methyltransferase; ACG94_26975; phage(gi410491498)1.85e-127Showinfo_outline
7879892..80125PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26980; phage(gi410491499)8.35e-44Showinfo_outline
7980699..81292PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H; ACG94_26985; phage(gi410491500)2.29e-117Showinfo_outline
8081719..81997hypothetical protein; ACG94_269900.0Showinfo_outline
8181994..82182PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_26995; phage(gi410491502)2.51e-12Showinfo_outline
8282285..82710PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; ACG94_27000; phage(gi100118)8.47e-78Showinfo_outline
8382710..82865PHAGE_Escher_Pollock_NC_027381: hypothetical protein; ACG94_27005; phage(gi849254797)1.11e-09Showinfo_outline
8482993..83571PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27010; phage(gi410491504)7.72e-74Showinfo_outline
8583700..83915PHAGE_Salmon_SSU5_NC_018843: putative DNA modification methylase; ACG94_27015; phage(gi410491505)3.48e-20Showinfo_outline
86complement(83977..87093)DEAD/DEAH box helicase; ACG94_270200.0Showinfo_outline
87complement(87210..88409)hypothetical protein; ACG94_270250.0Showinfo_outline
88complement(88406..89962)PHAGE_Acinet_Bphi_B1251_NC_019541: putative restriction-modification protein; ACG94_27030; phage(gi423261981)5.52e-17Showinfo_outline
89complement(90166..92031)hypothetical protein; ACG94_270350.0Showinfo_outline
90complement(93156..93347)hypothetical protein; ACG94_270400.0Showinfo_outline
9193910..94128PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27045; phage(gi410491521)3.13e-37Showinfo_outline
9294141..94353PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27050; phage(gi410491522)4.16e-32Showinfo_outline
9394490..94801PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27055; phage(gi410491523)8.07e-45Showinfo_outline
9494921..95328PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27060; phage(gi410491524)1.08e-29Showinfo_outline
9595456..95830hypothetical protein; ACG94_270650.0Showinfo_outline
9695833..96114PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27070; phage(gi410491525)1.33e-53Showinfo_outline
9796320..96802PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27075; phage(gi410491527)1.87e-91Showinfo_outline
98complement(97355..97558)PHAGE_Salmon_SSU5_NC_018843: putative MIT family metal ion transporter CorA; ACG94_27080; phage(gi410491529)2.75e-39Showinfo_outline
99complement(97609..98259)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27085; phage(gi410491530)4.00e-145Showinfo_outline
100complement(98581..98760)hypothetical protein; ACG94_270900.0Showinfo_outline
101complement(98893..99423)PHAGE_Salmon_SSU5_NC_018843: putative repressor of phase 1 flagellin; ACG94_27095; phage(gi410491531)1.92e-92Showinfo_outline
10299579..100016PHAGE_Salmon_SSU5_NC_018843: putative lipoprotein; ACG94_27100; phage(gi410491532)3.69e-15Showinfo_outline
103complement(100067..100342)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27105; phage(gi410491533)1.25e-39Showinfo_outline
104complement(100345..101904)PHAGE_Salmon_SSU5_NC_018843: putative helicase; ACG94_27110; phage(gi410491534)0.0Showinfo_outline
105101964..102668PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; ACG94_27115; phage(gi410491535)8.14e-146Showinfo_outline
106102668..103336PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; ACG94_27120; phage(gi410491536)2.20e-145Showinfo_outline
107103333..103974PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; ACG94_27125; phage(gi410491537)9.81e-150Showinfo_outline
108103964..104515hypothetical protein; ACG94_271300.0Showinfo_outline
109104512..105402PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; ACG94_27135; phage(gi410491539)0.0Showinfo_outline
110105412..105678PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27140; phage(gi410491540)8.05e-42Showinfo_outline
111105854..106495PHAGE_Salmon_SSU5_NC_018843: putative DNA-binding protein; ACG94_27145; phage(gi410491411)1.27e-109Showinfo_outline
112106498..107754PHAGE_Salmon_SSU5_NC_018843: putative terminase large subunit; ACG94_27150; phage(gi410491412)0.0Showinfo_outline
113107787..109361PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27155; phage(gi410491413)0.0Showinfo_outline
114109384..110283PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27160; phage(gi410491414)0.0Showinfo_outline
115110310..111188PHAGE_Salmon_SSU5_NC_018843: putative major capsid protein; ACG94_27165; phage(gi410491415)0.0Showinfo_outline
116111267..111695PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; ACG94_27170; phage(gi410491416)5.53e-40Showinfo_outline
117111743..112177PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27175; phage(gi410491417)1.80e-84Showinfo_outline
118112177..113010PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27180; phage(gi410491418)8.75e-177Showinfo_outline
119113108..113452PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27185; phage(gi410491419)3.73e-73Showinfo_outline
120113443..113916PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27190; phage(gi410491420)3.82e-103Showinfo_outline
121113918..114310PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27195; phage(gi410491421)2.03e-63Showinfo_outline
122114378..115124PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; ACG94_27200; phage(gi410491422)2.40e-146Showinfo_outline
123115186..115503PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27205; phage(gi410491423)1.71e-64Showinfo_outline
124115620..115853PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ACG94_27210; phage(gi410491424)4.30e-46Showinfo_outline
125115861..120396PHAGE_Salmon_SSU5_NC_018843: putative tail tape measure protein; ACG94_27215; phage(gi410491425)0.0Showinfo_outline
126120440..120775PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein M; ACG94_27220; phage(gi410491426)2.32e-67Showinfo_outline
127120787..120803attR0.0Showinfo_outline
128120862..121560PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein L; ACG94_27225; phage(gi410491427)2.50e-158Showinfo_outline
129121553..122350PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; ACG94_27230; phage(gi410491428)2.92e-175Showinfo_outline
130122338..122949PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; ACG94_27235; phage(gi410491429)2.10e-112Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 126466 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download