Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1094125564

GenInfo (GI) Number: 0000000000

Download Results: 1094125564.PHASTER.zip

gi|00000000|ref|NZ_MKCT01000001.1| Chromobacterium sphagni strain IIBBL 14B-1 Cmus_14B-1.1, whole 1269624, gc%: 63.80%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 2 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
134.9Kbintact15051296036-330991 info_outlinePHAGE_Mannhe_vB_MhM_3927AP2_NC_028766(16)62.76%Show info_outline
218.7Kbintact11023762448-781243 info_outlinePHAGE_Mannhe_vB_MhM_3927AP2_NC_028766(11)63.49%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_MKCT01000001.1| Chromobacterium sphagni strain IIBBL 14B-1 Cmus_14B-1.1, whole 1269624, gc%: 63.80%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 51 CDS

#CDS PositionBLAST HitE-ValueSequence
1296036..296332PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: transcriptional regulatory protein; BI344_RS22615; phage(gi971741503)1.63e-12Showinfo_outline
2296377..296895PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; BI344_RS01340; phage(gi985760911)5.62e-13Showinfo_outline
3296892..299027PHAGE_Pseudo_MP22_NC_009818: transposase A; BI344_RS01345; phage(gi157834977)0.0Showinfo_outline
4299079..299822PHAGE_Pseudo_LPB1_NC_027298: B Transposase; BI344_RS01350; phage(gi848469584)6.75e-84Showinfo_outline
5299822..300448PHAGE_Pseudo_FHA0480_NC_041851: hypothetical protein; BI344_RS01355; phage(gi100007)1.38e-34Showinfo_outline
6300435..300758PHAGE_Pseudo_D3112_NC_005178: hypothetical protein; BI344_RS01360; phage(gi38229123)1.39e-16Showinfo_outline
7300761..301048hypothetical protein; BI344_RS013650.0Showinfo_outline
8301207..301296energy transducer TonB; BI344_RS235900.0Showinfo_outline
9301395..302018PHAGE_Burkho_BcepMu_NC_005882: gp05; BI344_RS01375; phage(gi48696915)3.92e-103Showinfo_outline
10302020..302220PHAGE_Pseudo_JBD30_NC_020198: hypothetical protein; BI344_RS01380; phage(gi448244598)2.62e-05Showinfo_outline
11302222..302743hypothetical protein; BI344_RS013850.0Showinfo_outline
12302758..303048PHAGE_Bacill_SPbeta_NC_001884: histone-like prokaryotic DNA-binding protein family; BI344_RS01390; phage(gi9630187)3.98e-14Showinfo_outline
13303134..303622PHAGE_Pseudo_D3112_NC_005178: hypothetical protein; BI344_RS01395; phage(gi38229130)3.11e-39Showinfo_outline
14303613..304044PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: mor transcription activator family protein; BI344_RS01400; phage(gi971741519)1.45e-18Showinfo_outline
15304075..304599hypothetical protein; BI344_RS014050.0Showinfo_outline
16304688..305098PHAGE_Geobac_E3_NC_029073: endolysin-like protein; BI344_RS01410; phage(gi985758389)9.18e-23Showinfo_outline
17305095..305328PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; BI344_RS01415; phage(gi985760933)1.26e-13Showinfo_outline
18305318..305908PHAGE_Ralsto_RS138_NC_029107: Rz protein; BI344_RS01420; phage(gi985760934)4.95e-06Showinfo_outline
19305901..306110PHAGE_Mannhe_phiMHaA1_NC_008201: DksA-like zinc finger domain containing protein; BI344_RS01425; phage(gi109289947)1.13e-12Showinfo_outline
20306110..306328PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; BI344_RS01430; phage(gi985760936)1.27e-08Showinfo_outline
21306328..306828PHAGE_Pseudo_JBD24_NC_020203: hypothetical protein; BI344_RS01435; phage(gi448245073)4.18e-69Showinfo_outline
22complement(306829..307332)PHAGE_Pseudo_JBD69_NC_030908: hypothetical protein; BI344_RS23595; phage(gi100031)1.10e-47Showinfo_outline
23307356..308987PHAGE_Pseudo_H70_NC_027384: terminase large subunit; BI344_RS01445; phage(gi849255403)0.0Showinfo_outline
24308999..310579PHAGE_Ralsto_RS138_NC_029107: portal protein; BI344_RS01450; phage(gi985760939)0.0Showinfo_outline
25310566..311396PHAGE_Ralsto_RS138_NC_029107: virion morphogenesis protein; BI344_RS01455; phage(gi985760940)3.95e-74Showinfo_outline
26311393..311881PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: G protein 2; BI344_RS01460; phage(gi971741531)7.90e-18Showinfo_outline
27312020..312940PHAGE_Burkho_phi6442_NC_009235: gp67, conserved domain protein; BI344_RS01465; phage(gi134288665)3.17e-07Showinfo_outline
28313030..314127PHAGE_Ralsto_RS138_NC_029107: Mu-like prophage I protein; BI344_RS01470; phage(gi985760943)1.24e-81Showinfo_outline
29314124..314528PHAGE_Pseudo_JD024_NC_024330: hypothetical protein; BI344_RS01475; phage(gi658307211)1.02e-41Showinfo_outline
30314542..315450PHAGE_Pseudo_H70_NC_027384: major head subunit protein; BI344_RS01480; phage(gi849255412)7.48e-136Showinfo_outline
31315454..315795PHAGE_Pseudo_JBD25_NC_027992: RegA; BI344_RS01485; phage(gi100039)8.40e-05Showinfo_outline
32315798..316217PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; BI344_RS01490; phage(gi971741535)1.50e-27Showinfo_outline
33316217..316879PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; BI344_RS01495; phage(gi971741536)4.52e-32Showinfo_outline
34316876..317067PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; BI344_RS01500; phage(gi971741537)8.53e-07Showinfo_outline
35317067..318485PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail sheath protein; BI344_RS01505; phage(gi971741538)2.36e-130Showinfo_outline
36318501..318875PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail tube protein; BI344_RS01510; phage(gi971741539)6.89e-38Showinfo_outline
37318872..319252hypothetical protein; BI344_RS015150.0Showinfo_outline
38319383..321734PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail length tape measure protein; BI344_RS01520; phage(gi971741542)4.24e-79Showinfo_outline
39321769..323157PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: DNA circularization protein; BI344_RS01525; phage(gi971741543)8.17e-19Showinfo_outline
40323141..324268PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail protein P; BI344_RS01530; phage(gi971741544)1.61e-87Showinfo_outline
41324265..324891PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: baseplate assembly protein; BI344_RS01535; phage(gi971741545)2.91e-69Showinfo_outline
42324967..325530hypothetical protein; BI344_RS015400.0Showinfo_outline
43325579..325929PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; BI344_RS01545; phage(gi971741546)1.42e-31Showinfo_outline
44325929..326990PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: baseplate J protein; BI344_RS01550; phage(gi971741547)6.28e-99Showinfo_outline
45326990..327559PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail protein; BI344_RS01555; phage(gi971741548)8.74e-38Showinfo_outline
46327561..328487PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: defective tail fiber protein; BI344_RS01560; phage(gi971741549)1.18e-14Showinfo_outline
47328502..328909PHAGE_Haemop_SuMu_NC_019455: putative tail fiber assembly protein; BI344_RS01565; phage(gi418489074)3.71e-07Showinfo_outline
48328977..329147PHAGE_Burkho_KS5_NC_015265: gp21; BI344_RS22625; phage(gi327198019)4.24e-10Showinfo_outline
49329140..329283PHAGE_Burkho_phiE255_NC_009237: gp28, hypothetical protein; BI344_RS24535; phage(gi134288792)4.32e-13Showinfo_outline
50329280..330407PHAGE_Burkho_phiE255_NC_009237: gp29, conserved hypothetical protein; BI344_RS01570; phage(gi134288813)0.0Showinfo_outline
51330395..330991PHAGE_Burkho_phiE255_NC_009237: gp30, formyl transferase, putative; BI344_RS01575; phage(gi134288807)6.49e-73Showinfo_outline

Region 2, total 23 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(762448..763032)PHAGE_Caulob_Cr30_NC_025422: phosphoheptose isomerase; BI344_RS03665; phage(gi725949171)1.14e-17Showinfo_outline
2complement(763093..763854)PHAGE_Aeromo_phiO18P_NC_009542: putative cI repressor; BI344_RS03670; phage(gi148727133)1.17e-29Showinfo_outline
3764190..764609PHAGE_Ralsto_RS138_NC_029107: DNA transposition protein; BI344_RS03675; phage(gi985760931)3.84e-22Showinfo_outline
4764632..765036PHAGE_Geobac_E3_NC_029073: endolysin-like protein; BI344_RS03680; phage(gi985758389)2.39e-22Showinfo_outline
5765039..765260PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; BI344_RS03685; phage(gi985760933)2.51e-15Showinfo_outline
6765257..765820hypothetical protein; BI344_RS036900.0Showinfo_outline
7765817..766014PHAGE_Mannhe_phiMHaA1_NC_008201: DksA-like zinc finger domain containing protein; BI344_RS03695; phage(gi109289947)9.44e-13Showinfo_outline
8766026..766241PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; BI344_RS03700; phage(gi985760936)2.65e-09Showinfo_outline
9766318..767010PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; BI344_RS03705; phage(gi971741536)1.26e-09Showinfo_outline
10767098..768543PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail sheath protein; BI344_RS03710; phage(gi971741538)1.79e-125Showinfo_outline
11768617..768988PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail tube protein; BI344_RS03715; phage(gi971741539)6.00e-40Showinfo_outline
12768988..769338hypothetical protein; BI344_RS037200.0Showinfo_outline
13769574..771283PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail length tape measure protein; BI344_RS24555; phage(gi971741542)9.85e-06Showinfo_outline
14771283..772587PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: DNA circularization protein; BI344_RS03730; phage(gi971741543)1.51e-19Showinfo_outline
15772616..773632PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail protein P; BI344_RS03735; phage(gi971741544)1.97e-72Showinfo_outline
16773646..774332PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: baseplate assembly protein; BI344_RS03740; phage(gi971741545)2.00e-63Showinfo_outline
17774390..774740PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; BI344_RS03745; phage(gi971741546)2.26e-29Showinfo_outline
18774740..775828PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: baseplate J protein; BI344_RS03750; phage(gi971741547)5.25e-100Showinfo_outline
19775825..776403PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail protein; BI344_RS03755; phage(gi971741548)3.90e-41Showinfo_outline
20776472..778076PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: defective tail fiber protein; BI344_RS03760; phage(gi971741549)1.02e-09Showinfo_outline
21778366..779205PHAGE_Salmon_SEN34_NC_028699: acyltransferase 3; BI344_RS03765; phage(gi966201446)7.48e-05Showinfo_outline
22779384..780052SGNH/GDSL hydrolase family protein; BI344_RS037750.0Showinfo_outline
23780509..781243PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: putative phage tail protein; BI344_RS24300; phage(gi937533295)2.98e-33Showinfo_outline
Chromobacterium sphagni strain IIBBL 14B-1 Cmus_14B-1
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 1269624 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download