Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1095429788

GenInfo (GI) Number: 0000000000

Download Results: 1095429788.PHASTER.zip

gi|00000000|ref|CP016402.1| Klebsiella pneumoniae subsp. pneumoniae strain F77 plasmid pF77, 57009, gc%: 54.60%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
140.4Kbintact14057429-40898 info_outlinePHAGE_Salmon_SJ46_NC_031129(8)52.84%Show info_outline
218Kbquestionable802538772-56808 info_outlinePHAGE_Salmon_SJ46_NC_031129(4)58.92%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP016402.1| Klebsiella pneumoniae subsp. pneumoniae strain F77 plasmid pF77, 57009, gc%: 54.60%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 63 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(429..1151)PROPHAGE_Brucel_1330: transposase, putative; A7K74_1; phage(gi23502708)2.53e-53Showinfo_outline
21183..1196attL0.0Showinfo_outline
31183..1196attL0.0Showinfo_outline
4complement(1259..1666)hypothetical protein; A7K74_20.0Showinfo_outline
5complement(2259..2642)hypothetical protein; A7K74_30.0Showinfo_outline
6complement(2680..3003)PHAGE_Rhodov_vB_RhkS_P1_NC_031059: hypothetical protein; A7K74_4; phage(gi100030)2.05e-08Showinfo_outline
7complement(3000..3728)recombinase; A7K74_50.0Showinfo_outline
8complement(3725..4156)recombinase; A7K74_60.0Showinfo_outline
9complement(4199..5497)Putative DNA-binding protein; A7K74_70.0Showinfo_outline
10complement(5546..6208)PHAGE_Gordon_Schwabeltier_NC_031255: RNA polymerase binding protein; A7K74_8; phage(gi100054)2.96e-05Showinfo_outline
11complement(6279..6509)putative cytoplasmic protein; A7K74_90.0Showinfo_outline
126580..6729hypothetical protein; A7K74_100.0Showinfo_outline
136794..7096hypothetical protein; A7K74_110.0Showinfo_outline
14complement(7135..7260)hypothetical protein; A7K74_120.0Showinfo_outline
15complement(7332..7451)hypothetical protein; A7K74_130.0Showinfo_outline
16complement(7486..7740)PHAGE_Escher_HK639_NC_016158: DNA pol III theta; A7K74_14; phage(gi356870660)7.22e-24Showinfo_outline
17complement(7694..7930)hypothetical protein; A7K74_150.0Showinfo_outline
18complement(7933..8124)hypothetical protein; A7K74_160.0Showinfo_outline
19complement(8167..8673)PHAGE_Rhodoc_RGL3_NC_016650: antirestriction protein; A7K74_17; phage(gi372449791)4.18e-10Showinfo_outline
208886..9011hypothetical protein; A7K74_180.0Showinfo_outline
21complement(9078..9857)hypothetical protein; A7K74_190.0Showinfo_outline
22complement(9911..10330)hypothetical protein; A7K74_200.0Showinfo_outline
23complement(10341..10562)PHAGE_Entero_N15_NC_001901: gp50; A7K74_21; phage(gi9630517)2.37e-05Showinfo_outline
24complement(10562..11239)PHAGE_Staphy_Stau2_NC_030933: hypothetical protein; A7K74_22; phage(gi100063)6.14e-28Showinfo_outline
2511202..11372hypothetical protein; A7K74_230.0Showinfo_outline
2611369..11494hypothetical protein; A7K74_240.0Showinfo_outline
2711598..12269PHAGE_Pseudo_F116_NC_006552: hypothetical protein; A7K74_25; phage(gi56692976)8.96e-49Showinfo_outline
2812449..12871PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K74_26; phage(gi100082)2.10e-18Showinfo_outline
2912871..14142PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; A7K74_27; phage(gi431811050)0.0Showinfo_outline
30complement(14100..14285)hypothetical protein; A7K74_280.0Showinfo_outline
31complement(14278..15249)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K74_29; phage(gi100010)7.89e-73Showinfo_outline
32complement(15246..16388)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K74_30; phage(gi100009)3.08e-170Showinfo_outline
3316813..17445PHAGE_Staphy_StB27_NC_019914: integrase; A7K74_31; phage(gi431809677)1.12e-05Showinfo_outline
3417499..17699hypothetical protein; A7K74_320.0Showinfo_outline
3517764..17880hypothetical protein; A7K74_330.0Showinfo_outline
3617846..18796PHAGE_Sodali_phiSG1_NC_007902: transposase; A7K74_34; phage(gi89886005)6.94e-115Showinfo_outline
37complement(18744..19403)hypothetical protein; A7K74_350.0Showinfo_outline
38complement(19400..19864)hypothetical protein; A7K74_360.0Showinfo_outline
39complement(19848..20255)PHAGE_Vibrio_vB_VpaM_MAR_NC_019722: putative exonuclease; A7K74_37; phage(gi428782757)3.70e-16Showinfo_outline
4020309..21289PHAGE_Bacill_BMBtpLA_NC_028748: IS5 transposase and trans-activator; A7K74_38; phage(gi971482498)0.0Showinfo_outline
4121271..21813restriction endonuclease; A7K74_390.0Showinfo_outline
4221936..22226hypothetical protein; A7K74_400.0Showinfo_outline
4322226..22498hypothetical protein; A7K74_410.0Showinfo_outline
4422948..23343PROPHAGE_Brucel_1330: transposase, putative; A7K74_42; phage(gi23502708)8.02e-38Showinfo_outline
4523708..23721attR0.0Showinfo_outline
46complement(23802..24062)PHAGE_Stx2_vB_EcoP_24B_NC_027984: Cat; A7K74_43; phage(gi937456276)2.72e-27Showinfo_outline
47complement(24089..24445)PHAGE_Stx2_vB_EcoP_24B_NC_027984: Cat; A7K74_44; phage(gi937456276)4.06e-31Showinfo_outline
48complement(24595..24765)hypothetical protein; A7K74_450.0Showinfo_outline
49complement(24738..25019)hypothetical protein; A7K74_460.0Showinfo_outline
5025121..25867PROPHAGE_Brucel_1330: transposase, putative; A7K74_47; phage(gi23502708)3.48e-53Showinfo_outline
5125906..25919attR0.0Showinfo_outline
5226065..26478PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K74_48; phage(gi100063)1.68e-72Showinfo_outline
5326718..26731attL0.0Showinfo_outline
54complement(27343..27498)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K74_49; phage(gi100064)4.30e-18Showinfo_outline
55complement(27665..27868)PHAGE_Salmon_SJ46_NC_031129: sigma factor for late transcription; A7K74_50; phage(gi100065)4.17e-31Showinfo_outline
56complement(28073..28201)PHAGE_Salmon_SJ46_NC_031129: sigma factor for late transcription; A7K74_51; phage(gi100065)1.15e-06Showinfo_outline
57complement(28248..28469)PHAGE_Salmon_SJ46_NC_031129: sigma factor for late transcription; A7K74_52; phage(gi100065)2.08e-26Showinfo_outline
58complement(28629..29480)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K74_53; phage(gi100066)0.0Showinfo_outline
5929967..30338PROPHAGE_Brucel_1330: transposase, putative; A7K74_54; phage(gi23502708)3.69e-29Showinfo_outline
6030382..30618PROPHAGE_Brucel_1330: transposase, putative; A7K74_55; phage(gi23502708)1.87e-07Showinfo_outline
6130715..31320PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K74_56; phage(gi100060)5.33e-35Showinfo_outline
62complement(31317..31577)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; A7K74_57; phage(gi557307573)1.63e-47Showinfo_outline
6340898..40911attR0.0Showinfo_outline

Region 2, total 27 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(38772..39518)PHAGE_Xantho_Cf1c_NC_001396: hypothetical protein; A7K74_76; phage(gi17975752)1.99e-05Showinfo_outline
239404..39415attL0.0Showinfo_outline
3complement(39538..39762)conjugative transfer relaxase protein TraI; A7K74_770.0Showinfo_outline
439751..40467PROPHAGE_Brucel_1330: transposase, putative; A7K74_78; phage(gi23502708)2.64e-53Showinfo_outline
5complement(40413..40817)hypothetical protein; A7K74_790.0Showinfo_outline
6complement(41316..41459)hypothetical protein; A7K74_800.0Showinfo_outline
7complement(41456..42088)hypothetical protein; A7K74_810.0Showinfo_outline
8complement(42100..43002)PHAGE_Staphy_SA1_NC_027991: putative oxidoreductase; A7K74_82; phage(gi937456879)1.32e-10Showinfo_outline
9complement(43040..43273)hypothetical protein; A7K74_830.0Showinfo_outline
1043674..44003DeoR family transcriptional regulator; A7K74_840.0Showinfo_outline
11complement(44024..44887)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K74_85; phage(gi100066)1.38e-58Showinfo_outline
1245006..45089transposase of IS26; A7K74_860.0Showinfo_outline
13complement(45122..45547)PROPHAGE_Xantho_33913: Tn5041 transposase; A7K74_87; phage(gi21231545)1.19e-14Showinfo_outline
14complement(45451..48087)PROPHAGE_Xantho_33913: Tn5041 transposase; A7K74_88; phage(gi21231545)5.96e-22Showinfo_outline
15complement(48091..48651)PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; A7K74_89; phage(gi100061)3.52e-83Showinfo_outline
1648640..48807PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K74_90; phage(gi100062)4.93e-33Showinfo_outline
17complement(49052..49171)hypothetical protein; A7K74_910.0Showinfo_outline
1849100..49660putative replication protein; A7K74_920.0Showinfo_outline
1949815..50210hypothetical protein; A7K74_930.0Showinfo_outline
2050194..50472hypothetical protein; A7K74_940.0Showinfo_outline
2150583..51008PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; A7K74_95; phage(gi162135127)1.17e-25Showinfo_outline
2251136..51291hypothetical protein; A7K74_960.0Showinfo_outline
2351337..51633transcriptional repressor protein KorC; A7K74_970.0Showinfo_outline
2451638..52618PHAGE_Staphy_Pvl108_NC_008689: putative transposase; A7K74_98; phage(gi119443708)1.17e-06Showinfo_outline
25complement(52868..53749)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K74_99; phage(gi100066)2.88e-94Showinfo_outline
26complement(54075..54578)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; A7K74_100; phage(gi557307573)9.15e-106Showinfo_outline
2756808..56819attR0.0Showinfo_outline
Klebsiella pneumoniae subsp. pneumoniae strain F77 plasmid pF77
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 57009 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download