Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1095429891

GenInfo (GI) Number: 0000000000

Download Results: 1095429891.PHASTER.zip

gi|00000000|ref|CP016403.1| Klebsiella pneumoniae subsp. pneumoniae strain F5 plasmid pF5, 105125, gc%: 54.28%

Download summary as .txt file: summary.txt file_download

Total: 3 prophage regions have been identified, of which 1 regions are intact, 2 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
147Kbintact15054117-47174 info_outlinePHAGE_Entero_P1_NC_005856(4)53.77%Show info_outline
234.5Kbincomplete603648827-83370 info_outlinePHAGE_Entero_P1_NC_005856(5)52.67%Show info_outline
312.6Kbincomplete501890910-103608 info_outlinePHAGE_Salmon_SJ46_NC_031129(4)59.47%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP016403.1| Klebsiella pneumoniae subsp. pneumoniae strain F5 plasmid pF5, 105125, gc%: 54.28%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 60 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(117..839)PROPHAGE_Brucel_1330: transposase, putative; A7K71_1; phage(gi23502708)2.53e-53Showinfo_outline
2875..886attL0.0Showinfo_outline
3complement(947..1321)hypothetical protein; A7K71_20.0Showinfo_outline
4complement(1947..2306)hypothetical protein; A7K71_30.0Showinfo_outline
5complement(2368..2691)PHAGE_Rhodob_RcapNL_NC_020489: hypothetical protein; A7K71_4; phage(gi461475014)1.42e-16Showinfo_outline
6complement(2688..3416)recombinase; A7K71_50.0Showinfo_outline
7complement(3413..3844)recombinase; A7K71_60.0Showinfo_outline
8complement(3887..5185)Putative DNA-binding protein; A7K71_70.0Showinfo_outline
9complement(5234..5896)PHAGE_Gordon_Schwabeltier_NC_031255: RNA polymerase binding protein; A7K71_8; phage(gi100054)2.96e-05Showinfo_outline
10complement(5967..6197)putative cytoplasmic protein; A7K71_90.0Showinfo_outline
116371..6784hypothetical protein; A7K71_100.0Showinfo_outline
12complement(6823..6948)hypothetical protein; A7K71_110.0Showinfo_outline
13complement(6988..7140)hypothetical protein; A7K71_120.0Showinfo_outline
14complement(7175..7435)PHAGE_Escher_HK639_NC_016158: DNA pol III theta; A7K71_13; phage(gi356870660)7.20e-24Showinfo_outline
15complement(7383..7619)hypothetical protein; A7K71_140.0Showinfo_outline
16complement(7622..7813)hypothetical protein; A7K71_150.0Showinfo_outline
17complement(7856..8362)PHAGE_Rhodoc_RGL3_NC_016650: antirestriction protein; A7K71_16; phage(gi372449791)4.18e-10Showinfo_outline
188569..8700hypothetical protein; A7K71_170.0Showinfo_outline
19complement(8767..9546)hypothetical protein; A7K71_180.0Showinfo_outline
20complement(9600..10019)hypothetical protein; A7K71_190.0Showinfo_outline
21complement(10030..10251)PHAGE_Entero_N15_NC_001901: gp50; A7K71_20; phage(gi9630517)2.37e-05Showinfo_outline
22complement(10251..10928)PHAGE_Staphy_Stau2_NC_030933: hypothetical protein; A7K71_21; phage(gi100063)6.14e-28Showinfo_outline
2311058..11183hypothetical protein; A7K71_220.0Showinfo_outline
2411287..11958PHAGE_Pseudo_F116_NC_006552: hypothetical protein; A7K71_23; phage(gi56692976)8.96e-49Showinfo_outline
2512138..12560PHAGE_Cronob_ENT39118_NC_019934: protein umuD; A7K71_24; phage(gi431811072)5.57e-28Showinfo_outline
2612560..13831PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; A7K71_25; phage(gi431811050)0.0Showinfo_outline
27complement(13789..13974)hypothetical protein; A7K71_260.0Showinfo_outline
28complement(13967..14938)PHAGE_Entero_P1_NC_005856: ParB; A7K71_27; phage(gi46401681)7.48e-73Showinfo_outline
29complement(14935..16140)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K71_28; phage(gi100009)3.47e-173Showinfo_outline
3016503..17135PHAGE_Staphy_StB27_NC_019914: integrase; A7K71_29; phage(gi431809677)1.12e-05Showinfo_outline
3117189..17389hypothetical protein; A7K71_300.0Showinfo_outline
3217454..17570hypothetical protein; A7K71_310.0Showinfo_outline
3317536..18486PHAGE_Sodali_phiSG1_NC_007902: transposase; A7K71_32; phage(gi89886005)6.94e-115Showinfo_outline
34complement(18483..19094)hypothetical protein; A7K71_330.0Showinfo_outline
35complement(19091..19558)hypothetical protein; A7K71_340.0Showinfo_outline
36complement(19539..19946)PHAGE_Vibrio_vB_VpaM_MAR_NC_019722: putative exonuclease; A7K71_35; phage(gi428782757)3.70e-16Showinfo_outline
3720000..20980PHAGE_Bacill_BMBtpLA_NC_028748: IS5 transposase and trans-activator; A7K71_36; phage(gi971482498)0.0Showinfo_outline
3820962..21504restriction endonuclease; A7K71_370.0Showinfo_outline
3921501..21629hypothetical protein; A7K71_380.0Showinfo_outline
4021626..22189hypothetical protein; A7K71_390.0Showinfo_outline
4122595..22608attL0.0Showinfo_outline
4222595..22608attL0.0Showinfo_outline
4322640..23362PROPHAGE_Brucel_1330: transposase, putative; A7K71_40; phage(gi23502708)2.53e-53Showinfo_outline
44complement(23495..24136)PHAGE_Stx2_vB_EcoP_24B_NC_027984: Cat; A7K71_41; phage(gi937456276)4.24e-69Showinfo_outline
45complement(24286..24786)hypothetical protein; A7K71_420.0Showinfo_outline
4624803..24816attR0.0Showinfo_outline
4724848..25570PROPHAGE_Brucel_1330: transposase, putative; A7K71_43; phage(gi23502708)2.53e-53Showinfo_outline
4825576..25716hypothetical protein; A7K71_440.0Showinfo_outline
49complement(25752..26162)hypothetical protein; A7K71_450.0Showinfo_outline
5026202..26939PHAGE_Entero_phi80_NC_021190: DNA invertase, resolvase, site-specific recombinase Pin; A7K71_46; phage(gi824479608)1.46e-13Showinfo_outline
5126936..27160hypothetical protein; A7K71_470.0Showinfo_outline
5227282..27458PHAGE_Salmon_epsilon15_NC_004775: integrase; A7K71_48; phage(gi30387406)2.12e-10Showinfo_outline
53complement(27640..28644)PROPHAGE_Shewan_MR-1: IS110 family transposase; A7K71_49; phage(gi24375433)1.05e-58Showinfo_outline
54complement(28723..31689)PROPHAGE_Xantho_33913: Tn5041 transposase; A7K71_50; phage(gi21231545)5.77e-46Showinfo_outline
5531758..31771attR0.0Showinfo_outline
56complement(31810..32532)PROPHAGE_Brucel_1330: transposase, putative; A7K71_51; phage(gi23502708)2.53e-53Showinfo_outline
5732539..32739hypothetical protein; A7K71_520.0Showinfo_outline
5832759..33505PHAGE_Xantho_Cf1c_NC_001396: hypothetical protein; A7K71_53; phage(gi17975752)1.99e-05Showinfo_outline
5933560..34120PHAGE_Sinorh_phiM9_NC_028676: putative ProQ/FINO family protein; A7K71_54; phage(gi966199408)3.54e-06Showinfo_outline
6047174..47185attR0.0Showinfo_outline

Region 2, total 38 CDS

#CDS PositionBLAST HitE-ValueSequence
148827..48838attL0.0Showinfo_outline
2complement(60194..60379)PHAGE_Entero_933W_NC_000924: protein MokW; A7K71_108; phage(gi9632542)3.34e-13Showinfo_outline
3complement(60580..60981)hypothetical protein; A7K71_1090.0Showinfo_outline
4complement(61010..61336)PHAGE_Rhodob_RcapNL_NC_020489: hypothetical protein; A7K71_110; phage(gi461475014)2.07e-16Showinfo_outline
5complement(61333..62061)recombinase; A7K71_1110.0Showinfo_outline
6complement(62058..62489)recombinase; A7K71_1120.0Showinfo_outline
7complement(62534..64591)PHAGE_Gordon_Hedwig_NC_031099: RNA polymerase binding protein; A7K71_113; phage(gi100054)8.73e-07Showinfo_outline
8complement(64661..64909)hypothetical protein; A7K71_1140.0Showinfo_outline
9complement(64958..65500)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K71_115; phage(gi100049)3.15e-63Showinfo_outline
1065625..65930hypothetical protein; A7K71_1160.0Showinfo_outline
11complement(66192..66512)membrane protein; A7K71_1170.0Showinfo_outline
12complement(66547..66801)PHAGE_Escher_HK639_NC_016158: DNA pol III theta; A7K71_118; phage(gi356870660)2.03e-23Showinfo_outline
13complement(66989..67180)hypothetical protein; A7K71_1190.0Showinfo_outline
14complement(67223..67729)PHAGE_Rhodoc_CosmicSans_NC_028677: ArdA; A7K71_120; phage(gi966199624)1.84e-12Showinfo_outline
15complement(67772..68437)PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; A7K71_121; phage(gi162135127)2.87e-13Showinfo_outline
1668279..68455hypothetical protein; A7K71_1220.0Showinfo_outline
17complement(68452..68847)hypothetical protein; A7K71_1230.0Showinfo_outline
1868596..68739hypothetical protein; A7K71_1240.0Showinfo_outline
19complement(68881..69648)hypothetical protein; A7K71_1250.0Showinfo_outline
20complement(69702..70121)hypothetical protein; A7K71_1260.0Showinfo_outline
21complement(70131..70352)PHAGE_Entero_N15_NC_001901: gp50; A7K71_127; phage(gi9630517)6.40e-06Showinfo_outline
22complement(70352..71128)PHAGE_Staphy_Stau2_NC_030933: hypothetical protein; A7K71_128; phage(gi100063)5.77e-27Showinfo_outline
23complement(71490..71720)hypothetical protein; A7K71_1290.0Showinfo_outline
24complement(71783..72454)mediator of plasmid stability; A7K71_1300.0Showinfo_outline
25complement(72457..73428)PHAGE_Entero_P88_NC_026014: recombinase; A7K71_131; phage(gi744692717)6.46e-77Showinfo_outline
26complement(73559..73684)hypothetical protein; A7K71_1320.0Showinfo_outline
27complement(73677..75164)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; A7K71_133; phage(gi100001)2.31e-36Showinfo_outline
2875571..76002PHAGE_Cronob_ENT39118_NC_019934: protein umuD; A7K71_134; phage(gi431811072)5.10e-34Showinfo_outline
2976002..77273PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; A7K71_135; phage(gi431811050)0.0Showinfo_outline
30complement(77355..78329)PHAGE_Entero_P1_NC_005856: ParB; A7K71_136; phage(gi46401681)3.13e-114Showinfo_outline
31complement(78329..79534)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K71_137; phage(gi100009)0.0Showinfo_outline
3279545..79691hypothetical protein; A7K71_1380.0Showinfo_outline
3379948..80559hypothetical protein; A7K71_1390.0Showinfo_outline
34complement(80644..81510)PHAGE_Burkho_KS14_NC_015273: gp37; A7K71_140; phage(gi327198306)1.71e-17Showinfo_outline
3582046..82159hypothetical protein; A7K71_1410.0Showinfo_outline
3682288..82545hypothetical protein; A7K71_1420.0Showinfo_outline
3782370..82381attR0.0Showinfo_outline
38complement(82591..83370)PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; A7K71_143; phage(gi764159894)5.50e-07Showinfo_outline

Region 3, total 18 CDS

#CDS PositionBLAST HitE-ValueSequence
190910..91185PHAGE_Entero_P1_NC_005856: InsA; A7K71_158; phage(gi46401643)2.42e-57Showinfo_outline
291230..91607PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; A7K71_159; phage(gi557307573)1.34e-82Showinfo_outline
3complement(91770..91916)hypothetical protein; A7K71_1600.0Showinfo_outline
491933..92814PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K71_161; phage(gi100066)2.88e-94Showinfo_outline
5complement(93064..94044)PHAGE_Staphy_Pvl108_NC_008689: putative transposase; A7K71_162; phage(gi119443708)1.17e-06Showinfo_outline
6complement(94049..94360)transcriptional repressor protein KorC; A7K71_1630.0Showinfo_outline
7complement(94391..94546)hypothetical protein; A7K71_1640.0Showinfo_outline
8complement(94674..95099)PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; A7K71_165; phage(gi162135127)1.17e-25Showinfo_outline
9complement(95210..95488)hypothetical protein; A7K71_1660.0Showinfo_outline
10complement(96022..96621)hypothetical protein; A7K71_1670.0Showinfo_outline
11complement(96875..97042)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K71_168; phage(gi100062)4.93e-33Showinfo_outline
1297031..97591PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; A7K71_169; phage(gi100061)3.52e-83Showinfo_outline
1397595..100561PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K71_170; phage(gi100060)0.0Showinfo_outline
14complement(100594..100677)transposase of IS26; A7K71_1710.0Showinfo_outline
15100802..101662PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7K71_172; phage(gi100066)8.99e-59Showinfo_outline
16complement(101683..102444)DeoR family transcriptional regulator; A7K71_1730.0Showinfo_outline
17102435..102668hypothetical protein; A7K71_1740.0Showinfo_outline
18102706..103608PHAGE_Synech_S_CAM9_NC_031922: hypothetical protein; A7K71_175; phage(gi100095)8.01e-06Showinfo_outline
Klebsiella pneumoniae subsp. pneumoniae strain F5 plasmid pF5
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 105125 bps
Phages: 3
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download