Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1100607567

GenInfo (GI) Number: 0000000000

Download Results: 1100607567.PHASTER.zip

gi|00000000|ref|CP017931.1| Klebsiella oxytoca strain CAV1015 plasmid pCAV1015-111, complete 111395, gc%: 48.87%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
1110.6Kbintact140122530-111178 info_outlinePHAGE_Salmon_SSU5_NC_018843(78)48.86%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP017931.1| Klebsiella oxytoca strain CAV1015 plasmid pCAV1015-111, complete 111395, gc%: 48.87%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 124 CDS

#CDS PositionBLAST HitE-ValueSequence
1530..552attL0.0Showinfo_outline
22017..3561PHAGE_Klebsi_Sushi_NC_028774: tail fiber; AGF18_29995; phage(gi971742192)5.46e-55Showinfo_outline
33644..3958PHAGE_Salmon_SSU5_NC_018843: putative holin; AGF18_30000; phage(gi410491436)3.41e-48Showinfo_outline
43969..4661PHAGE_Salmon_SSU5_NC_018843: putative endolysin; AGF18_30005; phage(gi410491437)7.82e-132Showinfo_outline
54658..4909PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30010; phage(gi410491438)6.97e-20Showinfo_outline
6complement(5100..6287)hypothetical protein; AGF18_300150.0Showinfo_outline
76436..7101PHAGE_Salmon_SSU5_NC_018843: putative ParA family protein; AGF18_30020; phage(gi410491443)1.03e-119Showinfo_outline
87106..7480PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30025; phage(gi410491444)1.41e-30Showinfo_outline
97809..8555PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30030; phage(gi410491448)1.51e-94Showinfo_outline
108594..9955PHAGE_Salmon_SSU5_NC_018843: putative DNA helicase; AGF18_30035; phage(gi410491449)0.0Showinfo_outline
1110091..11206PHAGE_Salmon_SSU5_NC_018843: putative DNA primase; AGF18_30040; phage(gi410491450)0.0Showinfo_outline
1211272..12180hypothetical protein; AGF18_300450.0Showinfo_outline
1312267..12722PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30050; phage(gi410491453)2.24e-38Showinfo_outline
1412719..13183PHAGE_Acinet_vB_AbaM_Acibel004_NC_025462: hypothetical protein; AGF18_30055; phage(gi712915858)3.27e-05Showinfo_outline
1513183..14511PHAGE_Salmon_SSU5_NC_018843: putative DNA ligase; AGF18_30060; phage(gi410491454)0.0Showinfo_outline
1614508..14723PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30065; phage(gi410491456)6.91e-24Showinfo_outline
1714878..15129hypothetical protein; AGF18_300700.0Showinfo_outline
18complement(15763..16050)hypothetical protein; AGF18_300750.0Showinfo_outline
1916277..16888PHAGE_Salmon_SP_058_NC_021772: hypothetical protein; AGF18_30080; phage(gi526003526)2.25e-48Showinfo_outline
2017098..17568hypothetical protein; AGF18_300850.0Showinfo_outline
2117906..18184PHAGE_Entero_IME11_NC_019423: hypothetical protein; AGF18_30090; phage(gi414090513)3.21e-21Showinfo_outline
2218181..18426PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: hypothetical protein; AGF18_30095; phage(gi414087356)1.33e-22Showinfo_outline
2318438..18683PHAGE_Pseudo_OBP_NC_016571: putative glutaredoxin; AGF18_30100; phage(gi371671381)3.61e-15Showinfo_outline
2418897..19232hypothetical protein; AGF18_301050.0Showinfo_outline
2519229..19744hypothetical protein; AGF18_301100.0Showinfo_outline
26complement(20057..20554)hypothetical protein; AGF18_301150.0Showinfo_outline
27complement(20834..21325)hypothetical protein; AGF18_301200.0Showinfo_outline
2821554..22633PHAGE_Salmon_vB_SosS_Oslo_NC_018279: integrase; AGF18_30125; phage(gi399528791)8.81e-18Showinfo_outline
29complement(22623..22928)hypothetical protein; AGF18_301300.0Showinfo_outline
3023533..25503PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; AGF18_30135; phage(gi410491459)1.47e-177Showinfo_outline
3125600..26838PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; AGF18_30140; phage(gi410491460)0.0Showinfo_outline
3227016..29388PHAGE_Salmon_SSU5_NC_018843: DNA polymerase III alpha subunit; AGF18_30145; phage(gi410491462)0.0Showinfo_outline
3329459..30619PHAGE_Salmon_SSU5_NC_018843: DNA polymerase III alpha subunit; AGF18_30150; phage(gi410491462)6.36e-171Showinfo_outline
3430616..31038PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30155; phage(gi410491463)8.00e-22Showinfo_outline
3531476..32186hypothetical protein; AGF18_301600.0Showinfo_outline
3632347..32787PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30165; phage(gi410491466)3.85e-44Showinfo_outline
3732854..33834PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30170; phage(gi410491467)4.91e-83Showinfo_outline
3833895..34857PHAGE_Salmon_SSU5_NC_018843: DNA polymerase I; AGF18_30175; phage(gi410491468)9.68e-148Showinfo_outline
3934854..35114PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30180; phage(gi410491469)7.47e-17Showinfo_outline
4035132..36169PHAGE_Salmon_SSU5_NC_018843: putative RecA-like recombinase; AGF18_30185; phage(gi410491470)0.0Showinfo_outline
41complement(36156..36875)hypothetical protein; AGF18_301900.0Showinfo_outline
4236960..37163hypothetical protein; AGF18_301950.0Showinfo_outline
4337160..37987PHAGE_Salmon_SSU5_NC_018843: putative SPFH domain / band 7 protein; AGF18_30200; phage(gi410491472)1.07e-151Showinfo_outline
4438282..38863PHAGE_Yersin_phiR1_37_NC_016163: hypothetical protein; AGF18_30205; phage(gi358356637)6.96e-24Showinfo_outline
4539146..39400hypothetical protein; AGF18_302100.0Showinfo_outline
4639475..39747PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30215; phage(gi410491475)1.71e-15Showinfo_outline
4740006..40278PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30220; phage(gi410491477)1.36e-06Showinfo_outline
4840275..40487PHAGE_Salmon_SSU5_NC_018843: putative Cre-associated protein; AGF18_30225; phage(gi410491478)3.49e-07Showinfo_outline
49complement(40754..41878)PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; AGF18_30230; phage(gi410491479)2.59e-100Showinfo_outline
5042197..42844PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30235; phage(gi410491480)8.71e-84Showinfo_outline
5143081..44166PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 1; AGF18_30240; phage(gi410491483)0.0Showinfo_outline
5244163..46079PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 2; AGF18_30245; phage(gi410491485)0.0Showinfo_outline
5346069..46767hypothetical protein; AGF18_302500.0Showinfo_outline
5446784..47356PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H-like domain-containing protein; AGF18_30255; phage(gi410491487)1.58e-77Showinfo_outline
5547439..49769PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, alpha subunit; AGF18_30260; phage(gi410491488)0.0Showinfo_outline
5649865..50269hypothetical protein; AGF18_302650.0Showinfo_outline
5750283..51425PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, beta subunit; AGF18_30270; phage(gi410491489)0.0Showinfo_outline
5851499..52365PHAGE_Salmon_SSU5_NC_018843: putative phosphoribosyl-ATP pyrophosphohydrolase-like domain-containing protein; AGF18_30275; phage(gi410491490)2.52e-81Showinfo_outline
5952562..53653PHAGE_Salmon_SSU5_NC_018843: putative thymidylate synthase; AGF18_30280; phage(gi410491491)4.26e-164Showinfo_outline
6053655..54068PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30285; phage(gi410491492)2.42e-20Showinfo_outline
6154065..54541PHAGE_Salmon_SSU5_NC_018843: putative dihydrofolate reductase; AGF18_30290; phage(gi410491493)2.55e-55Showinfo_outline
6254538..55188PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30295; phage(gi410491494)4.01e-36Showinfo_outline
6355242..55649PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30300; phage(gi410491495)7.90e-20Showinfo_outline
6455646..56188PHAGE_Salmon_SSU5_NC_018843: putative exonuclease; AGF18_30305; phage(gi410491496)2.53e-73Showinfo_outline
6556323..57135PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30310; phage(gi410491497)3.54e-41Showinfo_outline
6657397..57825hypothetical protein; AGF18_303150.0Showinfo_outline
6757867..58952hypothetical protein; AGF18_303200.0Showinfo_outline
6859150..59761PHAGE_Salmon_SSU5_NC_018843: putative N-6-adenine-methyltransferase; AGF18_30325; phage(gi410491498)1.29e-100Showinfo_outline
6959944..60168PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30330; phage(gi410491499)9.11e-23Showinfo_outline
7060868..61302PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H; AGF18_30335; phage(gi410491500)9.31e-31Showinfo_outline
7161956..62381PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AGF18_30340; phage(gi100118)2.26e-77Showinfo_outline
7262624..63349PHAGE_Salmon_SSU5_NC_018843: putative phage antirepressor family protein; AGF18_30345; phage(gi410491503)2.07e-107Showinfo_outline
7363436..63870hypothetical protein; AGF18_303500.0Showinfo_outline
7463926..64243hypothetical protein; AGF18_303550.0Showinfo_outline
7564395..64688hypothetical protein; AGF18_303600.0Showinfo_outline
76complement(64870..65520)PHAGE_Escher_HK639_NC_016158: hypothetical protein; AGF18_30365; phage(gi356870625)7.62e-67Showinfo_outline
77complement(65530..65829)PHAGE_Entero_vB_EcoS_NBD2_NC_031050: hypothetical protein; AGF18_30370; phage(gi100050)1.28e-14Showinfo_outline
7865965..66225PHAGE_Entero_RB16_NC_014467: hypothetical protein; AGF18_30375; phage(gi304373673)3.76e-11Showinfo_outline
7966222..66872PHAGE_Salmon_SSU5_NC_018843: putative guanosine polyphosphate pyrophospho hydrolase/synthetase; AGF18_30380; phage(gi410491509)3.21e-70Showinfo_outline
8066976..68643PHAGE_Salmon_SSU5_NC_018843: putative DNA modification methylase; AGF18_30385; phage(gi410491505)0.0Showinfo_outline
8168652..68831hypothetical protein; AGF18_303900.0Showinfo_outline
8268873..69484hypothetical protein; AGF18_303950.0Showinfo_outline
8369558..69785PHAGE_Erwini_phiEa21_4_NC_011811: hypothetical protein; AGF18_30400; phage(gi219681285)5.05e-08Showinfo_outline
8469857..70177PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30405; phage(gi410491515)1.44e-52Showinfo_outline
8570341..70580hypothetical protein; AGF18_304100.0Showinfo_outline
8670632..70901hypothetical protein; AGF18_304150.0Showinfo_outline
8772404..72613PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30420; phage(gi410491521)1.02e-29Showinfo_outline
8872610..72978hypothetical protein; AGF18_304250.0Showinfo_outline
8973139..73468PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30430; phage(gi410491523)2.69e-23Showinfo_outline
9073595..74035PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30435; phage(gi410491524)1.40e-20Showinfo_outline
9174139..74378PHAGE_Aeromo_65_NC_015251: hypothetical protein; AGF18_30440; phage(gi326536816)8.25e-06Showinfo_outline
9274598..75080PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30445; phage(gi410491527)1.49e-13Showinfo_outline
93complement(75670..76314)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30450; phage(gi410491530)9.32e-69Showinfo_outline
94complement(76623..76931)hypothetical protein; AGF18_304550.0Showinfo_outline
95complement(76946..77416)PHAGE_Salmon_SSU5_NC_018843: putative repressor of phase 1 flagellin; AGF18_30460; phage(gi410491531)9.79e-22Showinfo_outline
96complement(77544..77912)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30465; phage(gi410491533)3.49e-08Showinfo_outline
97complement(77943..79520)PHAGE_Salmon_SSU5_NC_018843: putative helicase; AGF18_30470; phage(gi410491534)0.0Showinfo_outline
9879586..80299PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; AGF18_30475; phage(gi410491535)1.17e-110Showinfo_outline
9980283..80957PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; AGF18_30480; phage(gi410491536)1.10e-95Showinfo_outline
10080950..81591PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; AGF18_30485; phage(gi410491537)8.67e-131Showinfo_outline
10181581..82138hypothetical protein; AGF18_304900.0Showinfo_outline
10282135..83025PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; AGF18_30495; phage(gi410491539)3.87e-179Showinfo_outline
10383035..83301PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30500; phage(gi410491540)5.02e-34Showinfo_outline
10483471..84061PHAGE_Salmon_SSU5_NC_018843: putative DNA-binding protein; AGF18_30505; phage(gi410491411)3.66e-76Showinfo_outline
10584061..85317PHAGE_Salmon_SSU5_NC_018843: putative terminase large subunit; AGF18_30510; phage(gi410491412)0.0Showinfo_outline
10685349..86923PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30515; phage(gi410491413)0.0Showinfo_outline
10786936..87802PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30520; phage(gi410491414)5.24e-105Showinfo_outline
10887832..88704PHAGE_Salmon_SSU5_NC_018843: putative major capsid protein; AGF18_30525; phage(gi410491415)1.33e-175Showinfo_outline
10988778..89221PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; AGF18_30530; phage(gi410491416)6.03e-30Showinfo_outline
11089263..89688PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30535; phage(gi410491417)7.56e-59Showinfo_outline
11189688..90521PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30540; phage(gi410491418)4.27e-97Showinfo_outline
11290532..90876PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30545; phage(gi410491419)2.37e-45Showinfo_outline
11390867..91361PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30550; phage(gi410491420)2.52e-48Showinfo_outline
11491361..91741PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30555; phage(gi410491421)5.89e-43Showinfo_outline
11591834..92274hypothetical protein; AGF18_305600.0Showinfo_outline
11692426..92917PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; AGF18_30565; phage(gi410491422)1.22e-90Showinfo_outline
11793223..93540PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30570; phage(gi410491423)1.60e-43Showinfo_outline
11893666..93893PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AGF18_30575; phage(gi410491424)9.70e-34Showinfo_outline
11993898..98400PHAGE_Salmon_SSU5_NC_018843: putative tail tape measure protein; AGF18_30580; phage(gi410491425)0.0Showinfo_outline
12098447..98782PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein M; AGF18_30585; phage(gi410491426)3.47e-56Showinfo_outline
12198837..99535PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein L; AGF18_30590; phage(gi410491427)7.37e-132Showinfo_outline
12299525..100328PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; AGF18_30595; phage(gi410491428)4.44e-143Showinfo_outline
123100316..100927PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; AGF18_30600; phage(gi410491429)2.08e-94Showinfo_outline
124111178..111200attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 111395 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download