Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1104589028
GenInfo (GI) Number: 0000000000
Download Results: 1104589028.PHASTER.zip
gi|00000000|ref|CP014697.2| Klebsiella quasipneumoniae strain ATCC 700603 plasmid pKQPS1, 152001, gc%: 52.00%
Download summary as .txt file: summary.txt file_download
Total: 4 prophage regions have been identified, of which 0 regions are intact, 4 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 14.8Kb | incomplete | 20 | 6 | 459-15343 info_outline | PHAGE_Entero_P1_NC_005856(3) | 49.13% | Show info_outline |
| 2 | 7.3Kb | incomplete | 10 | 12 | 37871-45174 info_outline | PHAGE_Entero_P1_NC_005856(3) | 55.13% | Show info_outline |
| 3 | 5.2Kb | incomplete | 10 | 5 | 45174-50425 info_outline | PHAGE_Entero_N15_NC_001901(2) | 52.80% | Show info_outline |
| 4 | 4.3Kb | incomplete | 30 | 4 | 51176-55496 info_outline | PHAGE_Shigel_SfIV_NC_022749(1) | 51.91% | Show info_outline |
Region DNA
>1 459-15343 AAAATGTACATTTGCCATGAGCGGCAACGCCTTATTGAAAGCGATATTCACCGCGACCGACGCGAAAACG CTGGCCTTTCAGCGACGGATCAGAGGCGTTAAAAACCAGTTCGACTAATCGATTGGCCTCCCCCTGACGA AAGAGAAAGCGCTGCTGTCCTGCGGACAGACCTTCAGACAGTTCATTAAAACCGAACAACGCGTGCCAGT GCTCACGCGCGGCCTGCGGATCCTGCACCTCAAAAATGGCGCTCTGTAATGTCACTTCGCCTGCCGGATG CGGCTTGTCGAGCCCCTGAGCGCGTAGCCGCGTTAGCCGTGCGTTATCATCTTCTCCCCATTGCAGAACA AAGGGATACGGCAGGCCGTTAAAATCCCCATCAATGGTAAAAATACGCCAGCTAATGACGTTTCCTTGCG GGTCGTTGCGCTGGCCGTTAACAATTGGCGAGACCTGTAACCCTTGACTGCGCAACTCTGCATGCGTCTG GTCAATATCATCCGTGCGCAACGCTACCCGATGCAGCACCTGGTTTTCGGGCAAGAGTTGCGCCGCATCA CGGGAGAGCAAAAAATCGGCCTGCGCCGAAGCCAGCTCAACATAATCGTAAATGGCGAGAAACTCGATGT AGGTAAGCCCGAAATAACTGAGCGCATTCCAGGTTCCCCAGCCAGGGTGACGCCCACCGGCAAACGCGTT GAGCCCCTGCCCGGCAAACGTTGCAATCGCCTCGTCCGGCTGGTTCACAAACTGAACAGCGTGATCCCAT TTTAATGTTGTCATGAAGCCTCCTGAGACTGATAGAAACGCAGGCGGCAGGCGGCATCCCCCCGCGCCAG CGCCGTCTCAACCGCTAGCTGCACGCCATCAAGCGCATCGGTTAACGCATGATCCCCCTCCATGCAGATA TCACACAGCGTCTCAATCTGCCGGGCATCGCGTCCCTGCTGGCGCCAGCAATTGACGTAAGGGCAATAAT GGAACAGCACAATAAACTCTGACGGGCTGGCCGAAACGGTCTCCATTTCGTAAACCCGCGATTCCAGGCC ACGGGTAAACACGGCGGCAAACTCCTGCAGGTCGTGACCATGACGCATCTTCGCGCGCACGGAACGTCCG ATATCACGGCCATAATGGCGGATAGCGTCACGCGCATAATCGTCAGGCTGATGGCGTTGTCGGGACTCAT CAAGCAAATAGCCAAGCGTGGCCGCGCGTTTTTCGGTAATGGCACGCAGCGCCAGGGTAACTTCGTCGTC CAGGGTCGGCGCGTTGTGCGCCGAAGCGGGCTGTTTTGTACTCATCAGACAGCACTCCCCTTGAACGATT ATTCCCAGTCGGTATTCACTTTGACGTTTTCCGCGCCCGGCAGACCGTAAACATCTTCGTCATACCACTT GCGGGACAGCGCAGCGAGCGTGCCGTCCTTTTTGAGGGCAGCGAGTTCGTTGTCGATGGCTTTGATCAGT TTCGGGTCAGCATTCTTTTTGTATAAATAAACGTTAGGGAACAGGCCGACAGACTCGGAGGCTTTCAGAT TGAGATTGAGGGCTTTGTTTAACGCCAGTAATGCGCCAATCGGATAGATAGCCGCATCGTACTCTCCGGA AGCAACGGCTTTGAAAATGTCCGCCGCAGACTGCTCGCCGTTCGGTTGCAGATTGATTTGCTGCCCAGGG TGTTTCTTGTTGTAGTTATCAATAACGGTGTAGCGCGCATCGGAGGTATGAATCGGCACCAGCTTCTTCT TGCCGCTCGCCAGATCGCCCAGAGTATGAATATCGTTTTCATTGTTACGCACAATTAAGCGCAGGTCGCT AATCCCCGAAGGCTGACCGGAGGGTAATGGTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG TGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAAGGCGTGGTGCGTAACGGT AAAAGTACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAGCTACAGTTCACTT ACACCGCTTCTCAACCCGGTACGCATCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGC CAGTGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGG TAACCTCGCGCATACAACCGGGCAGTGATGTGATTGTCTGCGCTGAAATGGACGAACAGTGGGGCTACGT CGGTGCTAAATCACGTCAGCGCTGGCTGTTTTACGCGTATGACAGGATACGGAGGACGGTTGTGGCGGGC ACTGTTGCAAAGTTAGCGATGAGGCAGCCTTTTGTCTTATTCAAAGGCCTTACATTTCAAAAACTCTGCT TACCAGGCGCATTTCGCCCAGGGGATCACCATAATAAAATGCTGAGGCCCGGCCTTTGCGTAGTGCACGC ATCACCTCAATACCTTTGATGGTGGCGTAAGCCGTCTTCATGGATTTAAATCCCAGCGTGGCGCCGATTA TCCGTTTCAGTTTGCCATGATCGCATTCAATCACGTTGTTCCGGTACTTAATCTGTCGGTGTTCAACGTC AGACGGGCACCGGCCTTCGCGTTTGAGCAGAGCAAGCGCGCGACCATAGGCGGGCGCTTTATCCGTGTTG ATGAATCGCGGGATCTGCCACTTCTTCACGTTGTTGAGGATTTTACCCAGAAACCGGTATGCAGCTTTGC TGTTACAACGGGAGGAGAGATAAAAATCGACAGTGCGGCCCCGGCTGTCGACGGCCCGGTACAGATACGC CCAGCGGCCATTGACCTTCACGTAGGTTTCATCCATGTGCCACGGGCAAAGATCGGAAGGGTTACGCCAG TACCAGCGCAGCCGTTTTTCCATTTCAGGCGCATAACGCTGAACCCAGCGGTAAATCGTGGAGTGATCGA CATTCACTCCGCGTTCAGCCAGCATCTCCTGCAGCTCACGGTAACTGATGCCGTATTTGCAGTACCAGCG TACGGCCCACAGAATGATGTCACGCTGAAAATGCCGGCCTTTGAATGGGTTCATGTGCAGCTCCATCAGC AAAAGGGGATGATAAGTTTATCACCACCGACTATTTGCAACAGTGCCCCTTATTCTGAAGCAACCAGGCG GTGGCAAAATCAAACATCAGGCCGGGTCGCTCATTACTGAGCCATGCACGGGTGTATAGCAGGCGCTTCA GGCGGAAAGACCAGGGGAAATCGCCAAATTCATGGTAACCGTAATATTCCTTAATCAGCGCAGTATGCTC TCTGAGGGTGGTATCCCGTTCTGCGTAGCGGGAAAGGACTTCCGGACGGCGGATATTAAGCTGCACCGCG ACAAATTGCTGAACACCCGGCAGAACCCGGGTTAAATCTGTCAGAAAGGTGCCCAGAAAACGGGCGGTGG TGAGCTGAAGCGCAATTCCCAGCCGGTTATGCCTTCCCCGTCGCTGGTTAATGAAGGCAAGATCTCGCTC ATCAAGATGAAAATAGCGCGCCAGCTGCACGTCATTGGGTTCTGCAACATAGCGACCATAATTCAGTTCC TGCTCAGTGGTCAGAAAATCGACGGGCATATAGGCCTTCCTGCCTGACGGTTATATATTAACAATTTCGC AACCGTCCGAAATGTTATAATTTATAAGACAGCATAAAACGGCAGGCATGGACTGTCTATTAAATCGTAT TTTTGCCATAATAGACACAAGGTGTCTGATATTCGATTTAAGGTACATTTTTATGCGACTTTTTGGTTAC GCACGGGTCTCAACCAGTCAGCAGTCCCTAGATATTCAAATTAGAGCACTTAAGAACGCGGGGGTAAAAG CCAACCGTATTTTTACGGACAAGGCATCGGGAAGTTCAGCTGCCAGGGAAGGACTTGAGCTGTTGCGCAT GAAGGTGGAAGATGGAGATGTCATTCTGGTGAAGAAGCTAGACCGTCTTGGTCGTGACACTGCCGATATG ATTCAACTAATAAAAGAATTCGATGCCTTGGGTGTGGCAGTCCGATTCATTGATGATGGGATCAGTACCG ATGGAGAAATGGGGAAGATGATCGTCACAATTCTATCAGCAGTGGCACAAGCAGAACGTACTCGCATCTT TGAACGAACAAATGAAGGAAGAATTGAGGCCAAGTCTAAAGGAATTAAATTTGGCAGAAAACGGAAAATA GACAGGAATAAAATAAAATTTATGCATGATAAAGGAACTGGAGCAACTGAAATAGCTAAGCATATGGGTA TTGCGCGTTCAACCGTATATAAAATTATCAATTCAGAACGTTCACCAATCAATGATTGATTATCTTACAA CTGACAAGGTGGAATTGTGAGAACATTTGTTATAATTTGGACGATAGCTTTCATTGCGGTAATTGCTGTA ATGTGTACAGTGGATCTTTCATTATATGTACCTTCAATTTACACCGTATTTAATAAAAACAAACCTTTAG TAACTGGTATTATATATATACTACTAATATCTATTTTTATATGGCTAATTGTAGCGTTATATCTTTTAAA AAAATACTCATTTAAAGTAGAGAAATTAAGTTTAGGCGGCGTTAATGTTCTGTTCAATGAAAGTGGTACG TTATATCGCAAAAGTATAAAAAATCATCTGGATTCAAAAAGAGCTATCTTTAAGTTGAAGAAAAATGTGG ACGCATTCGATGAAGTTATCTCATCATATTATCAGACATATCAATTTATTAGAGATGAAATGAAACTATT GAATCCAAAAAAAGACAATGAGTTATATAATATTAGCAATGATATGTTAATGGTGTTAAATAAATTTTTA ACTAAAAATCAAAATAATTATAAAAGATGGTATAAATATATATCAGATAAGGATGAAGTTATTGATGTTA TAACTAATACACCATTAAAAGTTCACCTGACGCCTATAAATAAAATACAAAAGCAATACTATAACTACAG TAAAATATGTAACGATTTTAAAGTAGTAAATGATTTTTTCACATCACGGGTTCAACAAACATTTAACGTG AACACCACCAAATGGGATTGGTAACAAGTAAAGGGGAGTATCATACTCCCCTTTACTGTTTCTGCTAGCC ATTACGCATTCTCATTGGGGTAGAAAAAACGTATTCGCACTTATCTTTATCTTGATATGTTAACTCAATC ATTTTTCTAAGGTTTTCTGGGTTATTGTGTATCTGATCCCAGTTGACTATTGATATATATGACTTTTCAC TCATCAAGTTATCGATAACTCTTTCAGGCATATATGGATATATTTCTTTATATGTTGTTCTGTCGTTGAT TGTTATCCACTCGGTTATATTAGGATGAAATTCATTTTTTTCATTTTCACCATGACTGGCTCTAATGTTG TTTGTCCCTGTTGAAGGAAGATTTATAATAAAAATACCTGATTTGCCGTTTCTGGGACTATCCCTCATGG ATGAATATAATTCCCAATCAACATGCTTTCTATTTTTAGTCTCAGTCCCAACGAGTAAAATAAGAGCGGA TGTATCACGTAAATATTCATCCCTTATTATTTCTCTGATCTTTTGAGGTTCTTCTTCTTCATCAATGTCA CCAAGTGATACCGAGCGATTCACAAAAATATCAAAAACATCATTCATTTTTTCAAGTTCGTTTTTGTACC ATTGGTCATTAGCATGGTGGTAACTGATGAAAACTTTGTGCTTGGTCACGCTTTTTCCTCATTTATTCTC TGGTTTACGGATTTTACATCTTCATCCATACCGAGTAAAAGTCTTATAATTTATTTTTTCACACTAAGAG ATACTCTCAACCACTGGATACAGTATAATCAGGAAGTGGCTACATTCTTCCAATTCAAATGAAGAGAGCA GACTTACATGCAATTCATCCATAATGATCTTGGTCAAAGAAAAAGAGGGGAGATTGTTGAAATCACCCTT ACCAGTGGTGCAAATGTTAGACTAATGGATAGTTCTAACTTCAGTAGTTATAAGAATGGCCGACGACATT CCTACATTGGTGGGTTAGCAAAGCGCTCCCCCATAAGGTTACAGATCCCTTCATCAGGCCATTGGCATAT TGCTGTAGATATGCAGGGATTAAGGGGGAGTACCAGGGCTTCTGTTCGCGTTCTTCCAGGGGTTCTTCCT GAAATTCAGGATAGGCCGTTAAGCGAAGTTCCTAGTCTGGTAAGAGATAACAGACCACCGTCAACAGCAC AGAGCAACGAGATACATGACGTATTTATTTCGCATGCCTCAGAGGATAAAGATGATTTTGTTCGCTCTCT GGCAAACTCATTAATCAGTCACGGCCTTAATGTATGGTATGACGAAATGACGTTAAGAATTGGTGACAGC CTGAGACAAAAAATAGACAAAGGTTTAGCAAACAGTCGTGTTGGGTTAGTAGTTTTGTCTCCGGCGTTTA TAAGCAAAGGTTGGACAAATTATGAACTTGATGGAATCGTCACTCGTGCTATTTCTGGTGAGCAAATATT GCTTCCCATATGGCATAATATTACAAAACAAGAAGTTGTCGATTTTAGTCCATCATTAGCAGACAAAGTT GCTCGTAGTACTGCAACTCATACAATCGATGAAATTGCTCATGAGATAGCCGAGCTACTGCATTCTCGTG GTTAATGTTTATCGAAATTCAAATAGCAAAACAAAAGGATCAATCAGCGATCCTTTTTTTATTTTTATGA ATATCAATAAATTACATTCTTAACGTACGTTTTCGTTCCATTGGCCTTCAAACCCCGTGACTGCCGGAAG ATTACCGGCAGCAAGCAAAGCCTAACGGATGATGATTTTTTCCTTAAAGAGCTGCACAGCAGCGAAAAAT GGCCCGCATTCCTGCAAACCGCCGTTGAGAAGAAACGTACTATCGTGATCTGCGGTGAAACCGGGTCGGG GAAAACGGTACTCACGCGCGCGCTGTTAAAATCGCTACATAAAGACGAGCGTGTAATTATTTTAGAGGAC GTTCACGAAGTCACGGTCGATCACGTTGTAGAAGCCGTTTATATGATGTACGGCGATGCAGGAAAGATCG GCCGCGTCAGCGCCACTGATGCCCTGCGAGCCTGTATGCGTCTGACACCGGGCCGTATCATCATGACTGA GCTTAGGGATGATGCTGCGTGGGATTATCTTAAAGCACTTAATACCGGCCATCCAGGCGGTGTTATGTCA ACGCACGCTAACTCTGCGCGCGATGCCTTTAACCGTATTGGGCTGCTTATCAAGGCGACCCCTATCGGCC GTATGCTCGATATGAGCGATATTATGCGAATGCTCTACTCCACCATTGACGTTGTGGTGCATATGGAAAA GCGGAAAATCAAAGAAATTTATTTTGACCCTGAATATAAAATGCAGTGTGTGAACGGGAGCCTGTAATGA AAAACTTAGCAACCTGGCTTCTGGCCGCAGCATTTACGACAGCCGCCCTGCCCGCCTTTGCGGTGGAACC ATCCGTTCAGGTTGGCTACTCGCCTGAAGGAAGCGCCCGCGTTCTCGTCCTGAGCGCCATTGACTCCGCA AAAACCTCGATACGGATGATGGCTTATTCTTTTACCGCCCCGGATATTATGAAAGCACTGGTAGCAGCCA AAAAACGGGGAGTTGATGTGAAAATCGTAATTGATGAAAGGGGCAATACGGGGCGCGCCAGCATTGCGGC CATGAACTACATAGCGAACAGCGGCATCCCTTTGCGTACTGACAGTGATTTCCCTATCCAGCATGACAAG GTGATCATCGTGGATAATGTGACCGTTGAAACTGGCAGCTTTAATTTCACCAAAGCGGCCGAAACGAAAA ACTCGGAGAATGCGGTGGTGATCTGGAACATGCCTAAGCTCGCTGAATCATTCCTCGAACACTGGCAAGA CCGCTGGAATCGGGGGAGAGACTACCGTTCCAGCTACTGAATACTGACCGCCAAAAGGCGGTTTTTTTGT TCAAAGAAACTGATCTCAGTATCGCGCCCGGGGCAGCTGGCCAACGTCGCCGGCATCGCGCCGGCAAAAA TCGAAAAACAGAAATATCAGCAAGATAGCTTAAACAGGTGTCGGGAAATTTCGTTGAGATATTTTGAAGG AATCACAGTGTAAGCAGGCGCTTTTTCAGGGAGGCGCGTTCTTGCGGGTTGCGTCCCTTGTGATTGGCGA TGCGATCCGCCGTGGCGGCCTGGCGCTTGACGGGCCAGTAGGAGCGGCCATCCTTGCCCATCGACCAGAC GCTGCTGGCCTGGTTTTCCAGCAGGGGCAGATGGGCGCTCAGGGCTTCGGGCGACGCGCTGGTCAGCGCC GTGCGCTCACGGGTGCGCCAGCGCTGATGCCAGAGCTTCTTGTCCTCGCGCTCGCTGCCGCAGGTCGTGT GCCCGACGATGGGTGTTTTGCGGCGGCTGCGGCTCATAACGTAGTGGTCTCCAAGAACATTCAGGACTGA TCCCAGGCGTCGATGGTCAAGACCTGATCGGCAGGACAGGCGGCTACGCGGTCGGGAACTGGATGGTGTT CAGTCTCATGCCGACCCCATTCGATTGATCGCGTCGCTTGCGGCACGCTGCGACGCAAGGAGGTTTGCGA CCTGGTTTAGCAGCCGTGTCCGCTGCATGTCTGTTACCTATCTCCCCGACCGCTCATTGGACCAACTCCA GAGATTGGGCTCTATCGCTCAGCCAATACGAAACCGGCATTGGCTGATGCCACAACCGAGACTAACACAA ATGGCTCGGTACCTGTATTTCGCGCCCCGTGCACTTGGCCCGGTCTTGCCACGGCTATCTCACCTTCCCT GAGGGCACGAACAATCCCATTGCCCTGAAAGTAATCAGCCATTCCCGACAAAACAGTCCACGTGTCTTGG CCGTGAGGATGAATGTGAGCCGCAATTTCCTGCCCGGGATGGACATGCCAAACCACGATAATTGAGTCTC GGGTTTCAAGCACAACGGAACGAATAGGCTCGCCTTCGGACGGCTGAACATACTCGGCTACAGAAAATAT TCTCGATTCAACAGTCATCGGAGATCCCTCTTTCACAGTTGTCGTTACGGTCTTCATCGTCGGCATCCTG ACGCACGGCGGGCAATTGCTGGAGCAACGCCGGCAGCCATTCCTGTACCGTCTCCCACACCACATCGAGG TTGATGTCGAAATAGCCGTGAGCCATGCGATTACGCATATTGCGCATGCTGCGCCACGGCACGTCGGCAT GCGCCTGGGTGAACTCGACGTAGCCATCCATCACCTTTGTGGCCGCCTCGCCGATGACGATCAGGCTCAT GATGACGGCCTGCTGGGTGCGCTTGTCGGCCAAGAAGTCGTCCTTGGCCATCCCTTCCACGAAGCTGCGC GCATCGGTTGCGGCCTGCTGAATGTGGTCGAGGTAATCGGGCAGGCGGTTCTCGCTCATATCGGTTGCGC CTCCGCGAGCACCTTGGCCCGGAACTTCGGCGGCAGGTCGCCGGGAGTCAGCAGATCGACGTCAACGCCG AGCAGCGATTTCAGTTCTTCTTCCAAATCGCCCAAGTCCAACAACGTGGCACCGGGCAGCGCATCGACCA ACAGGTCGAGGTCGCTGCCATCCCGGTCGGTGCCATGCAGCACCGAGCCGAAGACGCGCGGGTTCGCGGC GCGAAAGCGGCCTACCGCTTCACGCACTGCGCTTCGCTTCATGTCAAGCACAACAGACGGTCGCATGCGC ATCCTTTCTTATCGAAACTCGTTGAGATGATATGCAATCAAGAATAGAATTTCAAGAACTATTTTCGAGA ATCGCAATGCCTTGATTCCCGTGCCGCGCCGGTTGCCTTGGCGGGCTTGTCACAAACCTACGTTTTCAAG AAGAAGGAAACCGCATGCCCCGCCGTTCGATCCTCTCCGCCGCCGAGCGCGAAAGCCTGCTGGCGTTGCC GGACACCAAGGATGAGTTGATCCGTCACTACACGTTCAGCGAAAGCGACCTCTCCATCATCCGGCAGCGG CGCGGCCCGGCCAATCGGCTGGGCTTCGCGGTGCAGCTCTGCTACCTGGGGTCGTCTCAGAATTCGGAAA ATAAAGCACGCTAAGGCGTAGTCACCCCGTGACTCCCCCGCGCCGATGCAGCGAGCTTCGTTCCGTCTTG CAGTGACGCAATCAGCGGGCAGGAAACGTTCCCTTTCCGCGCGTGGCAGGCGCACACCAGTTCAGACAGC ACGGCCTCCATGCGTGCCAAGTCGGCCATCTTCTCGCGCACATCCTTGAGCTTGTGCTCGGCCAGGCCGC TGGCTTCCTCGCAATGGGTGCCATCCTCCAGCCGCAGTAGCTCGGCGATTTCGTCCAGGCTAAAGCCCAG CCGCTGGGCCGATTTCACGAACCGCACTCGTGTTACATCCGCCTCGCCATAGCGGCGAATGCTGCCATAG GGCTTGTCTGGCTCCGGCAGCAGGCCCTTGCGCTGGTAGAACCGGATGGTCTCCACATTGACCCCGGCCG CCTTGGCAAAAACGCCAATGGTCAGATTCTCAAAATTAATTTGCATATCGCTTGACTCCGTACATAACTA CGGAAGTAAGCTTAAGCTATCCAAACCAAATTTGAAAGGACAAGCGTATGTCTGAACCACAAAACGGGCG CGGCGCGCTCTTCGCCGGTGGGCTGGCCGCCATTCTTGCGTCGGCCTGCTGCCTGGGGCCGCTGGTTTTG ATCGCCTTGGGGTTCAGCGGGGCATGGATCGGCAACCTGACGGTGCTGGAACCCTATCGCCCGATCTTGG GGTCCGCTTGGAAAACGGAAAATATCCTACGCTAAGCCTATTTTTCGTACAGATTACTTCATGGGTCTAT GGTGATAGCTAAAAAATCACCAATACTACCTCACGAGTATGTTGATAGCTCATCGTACCCCGTATCAAGT TTGCATATACCAAGGAAGCGGAGACGAAAGACCACCTATTACTGAGGGATCCCCAGTAATGGGAGGGTAA AATGAAAGGTATAGTGCTACCAATTACTCACCGTCAGTCACGTATCGCTGGATTAACTACGGCATTCGCA GCGAGATAAGTATTCCCCATGTTAAGCCAATAGCAATATAATTATCCATTTTAATTTCGGGCTAGCACCA GTGAATTTTTTTGTTTTTACGAAAACTTTCAGTAAAAAGAAAATATCACTAAGGCTATATACACCTTTTA TTAAATCTTTATATGCTATTTCTCTAACAAATAACCGCCTGATTTTTTCTTTGTCCCTCACCTTTTTTCT ATATAAACCTAGAAAGTGTCTAGCCTCATACAGGGCATGCCTAAACAGCGATACGCTCAAATCATTATTT TTTATCGACTTTGCGTGACCGATGGTTTTAGATATTACATCAATATAGCATTCTGCTCGGACGTCGAAAT AATCACCGCGATTTGTGATGGATTCATTATTGTACTTGTAGGTGTAGTCCATATCTTTTGATATGTAGAA ACGCCCATTTGCCAACGCCAATTCCATCGTCCATAAAATATCTTTATGACTCCGGCCATCATGAAATGAC AGATTGTTATTCCTGATATAGTCAGATCTAACTATCTGTAACCAAAGGTAATGTGGCCATTCCCTGACTT TTACTGCGTGACTCATCCACGCATTGCCGGATAAAACCTCATCATAAGGCTGGTTAGTATGCACGGGTTT TTTATTATCGCCTTCATGCCAAAGCTTCCAGGCATTGGACAAAAGCACATCAGCATTATGGCTGGAAGCC TGGATATACCTGTTATAAATGAATCCTTCAGACACATCGTCATCGGCATCCAGAAACATGACCCACTGGC CTTTATGCTTGTCTAATCCATTATTTCTGGCCGCGTATACACCTTTATTATTTTGTTCAATCACTTGAAC CCTGCCATCCTTTATGGAGTTAATTATCGTTGACGTGTTGTCTGAGGAGCCATCGTTAACGATAATAACT TCAATGTTGATCCTGTCTTCTATCAAGATATCTTTGATCAAGGATTTGATGGTTTTTTCTGCGTTGTAAA CGGGGATTATTACACTCACCGCAATTTCATGTTTCATGTTCACTCCAGTAAATTGAACGTATTTATTTGT CCCCGGAGTTATTTCCGGGGACAAAAATCACCTCAGCATTAAGAGTGGAATTTGTGTTTTTTCCAACATG GCGGTGGTGTTGCTGCCGATAAAGAATCGCCGCAATGGCGAATGGCCATAGGCACCCATCACAATCAGGT TAATGCCGTTTTCATTAGCGTAACGGCAGAGCGCATCAGCAACGGATGTACCTTCCAGTATGTGGCTTTC GGTCGTAATGCCAGCCTCTTGCAGCACATTCTGTGCTTCCTGCAAGGTTCGTGTATCCCCCTTAACCATC ACGATGTGGCAAACCAGACCATTGAGTAGCGGGCTAAGTGTCAGGCGCGTCAGGTTTTTGCGACTCTCAT CGCTGCCATCATAGGCGAACATAACTTTGGTCGGTGTAGAATAAGCCTCCGGCACGATAAGTACCGGTTT TTTCTGCAGCCGAATAATTCTTTCTAGGTGGCTGCCAACCGGGTTCTGCGTTCCACGGCGGCCCAGCACC ATCAGGCGAACATCCCCTAAATCAGCCAGGATTTCATCCAACGCGCCATGTTTTTGCAGTAATTGAACAT CAGCATGACCGGCATCATTCAGCAACTCCGCACAGCCAGCCAGTATGGCTTTGCCCTGCGCCATTAATAA CCGACTACGCTCTCCTTCAACTTTCACCAGCTCTTCGGTGAGATGAGCCTGGCTATCAATGCCGATGCTT CCGGTCAAATCTGACACGGCAGGATGCGCATCTTTCTCCAGTACGTGCAGCAGCGACAGAGGTGAATCCA GCAGAGCAGCGGCCCATGCCGCGTATTCACAAACCGCTCGGGTCGACGGCGAACCGTCAACGCAGGCAAT AACGGTATTATTCATTATCTGTTCTCCTGACTGTTAATGGCCGCCCATTAATTTTTCCACTTCTTCGGGT TTGTCATGCACCCCAAAGCGGTCAATAATGGTGCGGGTAGCCTGATTCATGCCACGGATTTCTACATCCG TACCTTCACGGCGGAACTTAATGACCACTCTGTCGAGTGCGCTGACCGACGTAATATCCCAGAAGTGGGC GTGCGAGACGTCAATGATCACATGCTCCACCGCTTCACGGAAATCGAAGTGGCTCATAAACCGATCGGCA GAGGCGAAAAACACCTGGCCGGTTACGGCGTATGTCCGCGTTGACGCTTTGAGTTCGGATGACACCGCCA TAAAACGGGACACTTTGCTGGCAAAGTTCAGTGAGGCGATCAGCACACCAGTCAATACGCCATACGCCAG ATTATGCGTTGCTACCACCACGACTACGGTAGCCAGCATGACGACGCTGGTTGACAGTGGGTGGCTGCGC AAGTTGGTAATAGAGCGCCAGGAGAAGGTGCCAATAGAAACCATGATCATCACCGCTACCAGGGCCGCCA TTGGGATCTGCGAAACCCAGTCACGCAGGAAGACCACCATACAAAGCAGGACGACGCCTGCGGAGAGTGC GGAGAGACGCCCACGCCCCCCGGATTTCACGTTGATCACCGACTGGCCGATCATCGCGCATCCGGCCATA CCGCCAATAAATGCAGCGCCAATGTTGGCAACCCCTTGAGCCTTACACTCCCGGTTTTTATCGCTCGGCG TATCGGTCATGTCATCCACAATGGTCGCGGTCATCATCGACTCAAGCAGCCCCACCACAGCAAGGCCGGC GGAATAAGGCAGAATGATTGATAGGGTATCGAAATTAAGCGGCACATCGGGTAACAGGAAGACCGGCAGA CTGTCCGGCAACTTGCCCATGTCGCCGACGGTGCGTACGTCCAGATGCAGCCACATGGAGATCCCGGTCA GCACGACGATACAGACCAGCGGCGAGGGGATGGTTTTATTGAGGTACGGGAACAGATAAATAATGCCTAG ACCGGCCGCCGTCATGGCGTAAACGTGCCAGGTGACGTTGGTCAACTCCGGCAACTGCGCCATGAAAATC AGGATCGCCAAGGCATTGACAAAACCGGTAACCACCGAGCGCGAAACATAACGCATCAGACTGCCAAGCT TTAAATAACCAGCAATAAGCTGAATCACACCAGTAAGCACAGTAGCGGCCAATAGATACTGTAGGCCGTG GTCTTTCACCAGCGTCACCATCAGCAGTGCCATCGCGCCGGTTGACGAAGAAATCATTCCTGGACGCCCA CCGCAGATAGCGATTATCAGCGGGATACAAAACGCAGAGTAGAGCCCGACTTGCGGGTCAACGCCGGCGA TGATGGAAAAGGCGATCGCTTCAGGAATAAGCGCAAGCGCGACAACAATACCGGCCAGTACGTCACCACG GACGTTACCCAGCCAGTCCTTACGCGTCGAGGACAGCAACATAGTATTTTCTCAGTTTTAGAATACAGTC AGCCCGTAAAGGGCAAAAAAATTTAGATACGATAAAGCACATCCGCAGACGGGATGTTAAAGAGTGCGTG CTGAGGGTTACTCAGAACGACAGAGAAGGGGAAAACTCAGGGTGGCGTCATACGCATGGTCGTTTTTATT ACTCCTTGATGGTCGGTGTGTACACCTTCAGGGATCAGATAAACCAGATGAAGATATTCAAGGCTGGCCG CGGAGTCTGCCAAGGCAAACCGCGTATTACTATAAACGAAACTGAAACAGGGTCAATCATGGATTAAATG TGCCATTAATGTATACCTCAATGTCATAGCCTAAAGTGCCGCCATTTTCCCCTTGGATCATCACCTATCT GTCACGTACATTATGATCATCACTTAAACGTCATAAATGGGTGAA
Region Details
| Region | 1 |
| Region Length | 14.8Kb |
| Completeness(score) | incomplete(20) |
| Specific Keyword | transposase |
| Region Position | 459-15343 |
| # tRNA | 0 |
| # Total Proteins | 6 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | yes |
| # Phage Species | 4 |
| Most Common Phage Name(hit genes count) | PHAGE_Entero_P1_NC_005856(3) PHAGE_Staphy_SPbeta_like_NC_029119(2) PHAGE_Salisa_1_NC_017983(1) PHAGE_Escher_D108_NC_013594(1) PHAGE_Shigel_SfIV_NC_022749(1) PHAGE_Mycoba_Dori_NC_023703(1) PHAGE_Entero_Mu_NC_000929(1) PHAGE_Salmon_SJ46_NC_031129(1) PHAGE_Entero_vB_IME197_NC_028671(1) |
| First Most Common Phage # | 3 |
| First Most Common Phage % | 50% |
| GC % | 49.13% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Region DNA
>2 37871-45174 TTGAGAAAACAACTGGTATTAGCTACCCTGCTTTTAATTTCCACGCCTGCCTGGGCTGCGGATTGTTTTG ATATGGCAGGACGGGACTATCGAATAGATTCCGATCTACTGCGGGCTATTTCATGGCAGGAGTCTAAATG GAAGGTGAATGCCATTGGGAAAAACCCGGGATCTGGCTACGGTGCCGGACTGATGCAGATCGACTCGCAA CACCAGGGTGAACTGTCGCAGTACGGTATTAAACCGGGACACCTTCTGACTGATGCCTGTCTGAATATTT ACACCGGTGCTTATTATCTGGCACTGGCTTTTAAAAAATGGGGAGTCAGCTGGGAGGCAGTCGGCGCCTA CAACGCCGGGTTCCGGAGATCGGACAGGCAGGCCATACGACGACTGGAGTACGCCAGGAAGATTGAGGCC ATCTACCTGGCTATCAAGAGAAATAAAAATGCCGGCCAGTCATCTTTAACAAAAAACTGAAGACCTCATT CATGAGGTCTTCAGAACAGGGAAGTTATTAATCAATTGCCCGCCATATTAAATGCCGTTCGGGATGCTGA ATAATGCTGATATAATCCTTCAGTGCATCCTGCCGTGAAACCAGACGCCTGCAGATCTGGTCATATTGCG GCCCCATTTCAGCCACGTGCCAGGACAGCCTGTTCATAATCATCAGCGTGGCAATAATGCCTGCTGCATC GGCGCTGACCTCACCTTCGAAATAATTTCCCGGGATGCACATCCTGTAACGCTGCTCACCTTCTGGTGCG ATATATCCGGTCTGCGTGTTAATGAACTGGATGCTGTTGGGTGCAATATTCCCGCCAACACCCTGTGGAA TAACCCAGTAAGACCAGGAACCGCCGTTGTATTCAGAATGCTGGCGTAACCAGCTCGCTGCCATATTATC GGCTAACGGCGTAAAAAAGAGGTCCGGGATAAAATCCAGGCGAGCTTTACCATTGGTTACGGCACAGCGC AGATATTTGTCTGTTTTAAAAAGTTCGTCTGATTCACGAGTGGCGGTGTTGACTTTCATTGTGCGCATAC TGATTTTCTCCTTCGCGGTTTATTAAAACGTTCGACTTCATCACTGAGCGGCGAAGGGCAATTTGCAGCC GACGGGGAGAAAATAAAGGGGCGCCTGGCGTTCATATACCCCTTTATTTTCGCCACGGCTGATGCTAAAA GCAGCCCTCCGCGAAAGATGAAGTCGGGCGATATCGAGCAGGAGTGAGAATGCGCACAACCCTGAACGTC AATCCGGTGTTTATCGGATTCACGTTCAGGCCCTGGAGTGGCGGGTATTTATCGCCACGGTGAGAGCGGC GCATCCTGATAAGGATGCAGCAAGCGAGATTTTGAATTTGCGTCAGGATGGAAGCCCGAAAGGGCAGAGA CAGCTTGCTGGCTCTGTTCACGACAGCCGTGTCCCGACAGGGACGACGCCCGGGTCAGTATTTATTTAAT CTTTCATCAGAAATAAATAGCGGAAGAGATACACAGCAGAATATCGGAAGCGATGTAACAGGGATGAATA AAGAATATTGATGAGATACTACCGCGCCGGAGTAATACGGGCGGCGCGTAGCGCAGCCGGTATTATTCAG CGCCACAGGCGCTGCGGCCCTTCAGCGCTGTAGGGCAGGTTATCCCCTGCCCTTCCGGTTATTTACGCGG CCTCCTGTATTCCGCGCATAAAGTCCCGCATGGCCCTGAACCGGCGCAGATCTGTCAGTCGTTTTTCAAA GTCATTGAGGTAGAAAACCGGGGTATACCTCACACGCCGGATCTGCATCGTGAGCGTGTTGCCCGTCATC ACTTCCGCGGCTATCCCCAGCAGTGACAGCTGGATGAAGGCCATATCTGCTGCCACTGGATCGATGTCAA TGCAGCTGCCGAACATGTGCATGGAGGGGTTAATATCCGCTTCAAGCAGGCACTCTGCATAGGCGATCAG CATCCCTGCGGCCCCACACGCCGGATCGCTGACGGTGGCAATGCCTTCCCGGCGGATAGTGTCTCTGACG CCTGGCATCAGCATTCGCGCCATCAGACACTGCACCGAATACGGCGTAAAATACTGCCCGCGAAAGTTAT CGCCCAGATCAAGCTCCATAAAAATCGCGCCGAGGAAATCATGAAATTTCGCCTCCAGCGCACACACCAT CAGGCAGAACATTTCCTGCATGTTCGCGACGTCGGCGGCCTCGTACCGGGCGCAGATTTTCCGGCAGTGC TCCATGCTCTCTGGCGTTCTTATCCGGGCCATATCCAGCTCACTGGCGGCGAGTGACAGAAAATCACTGA ACACTTCCCAGCGCCCCAGATGGCGGCCCGTATCCTTAAATACGCTGATGAAACGGCCCCGGCTGTACTG CGCGCTCATCATACGATGAACCGCAGGCACCTGTTCCGCGATCTGCAGCCCTGCCTGAATAACAGGGCTG TTATCCGCGGTTTCTCTGGCCAGATTGAACACATCGGCAAAATTCATCTGTGACATAGCATTATCTCCGC TGTTGCCGCTCCCGAAGGAGCGGCTCACCTTGTCAGTTACATGCGCGTTTGAGTTCAAGCGTGCGGAGCA CCTGCCCGAAGGCGGTGTTGTTCATCGCGGGGATATGGACACCACGCCCCTTGCGAACGCTCCGGGCAAT ATGCCGTCCGAAAGCCTTCAGCACCGGGTCAATCTCCTGTGCGGCGATATCATCACGCAGGTTGCGCTGA TGACGGCGGGGCTGCTCGCTGAGCAACTGTTGCAGGGCGGCAAGACGGCGGCCACCTGCAGCCACCCCTG ACATACCGTCCGGCAGCGAGTGAACCACCAGATTCTGGATCAGGCCGATCGCCATGATGGAGTCAGCCAT CTCCCGGACACTGTCAGCCGGATAGGGGATCGTGCGAAAGTTCAGCGGGGATTTGACCAGCGCCGACAGC GGCACCATCTCAACCTGAGCAGCCTCAAGCGCGGCTTTCAGGGCGGCGGATTCGGCAGGGTTCACCGATT TTTTGCTGGTTTTAACCGGCGCTTTTGCTTTAGACTCGGTCACTGACATAATTGATTTCTCTCCGATATT GGTTAATGTCTGCCGGGCAGACCCATCTGCCCGGCACCTATTACGGCTTATTGCGTTTTGCGTACTCCGT AGTCCCGGATGTAACGGTTCATCATGTCCTCGCCGCCCGGTTCAAAATTCCAGACGCGCCAGACCATGCT GCCGTCATCCTGATGACGGACGACAAGGCGAAAATGGGTCCCCTGGTCATCTTCAATCGCCACATTCTGA TACTGCGCGGCGACAATCTGAGCCTGCTCGCGGGTAAACGTGCCATCCGGCAGAGATTCAAGCGGGGACA AAACGTTATGGTCCATATGTTTCTCCTTCTCTGCCCCGCCTGAACGGGGCGTCTTCATCATGGTTTAAAA GGGCGCGTCGTCATCCATTGGTGGGAAATCATCCGGGAGTGGCTGAGGCGGTTGCTGAGACGGAGCCGCA TCCTGACGGCCTTTCTTACCGCCCTTCGCTTTCGGGGATTTAGCCGGGGCCTGAGCAGGTTGTGCCGGGG CGGCAGGACTCTGCGGCTGCGCAGTGCTCTCAGGCACACCGGATTCACGGCGGCCGCCGAGCATCTGCAG GGTGCCGTTCTGGCCGACCAGCACCTCGGTGACGTAGCGCGTGACTCCGGCATCGTCCTGCCAGTTGCGG GTGCGCAGCTGGCCCTCGATGTAGACCTGCGCGCCTTTACGCAGGTATTCGCCCGCCACTTCCGCGAGCT TGCCGAACATGACAACACGGTGCCACTCGGTGTTTTCGCGCATCTCTCCCGTCTGCTTGTCACGCCATGT TTCAGACGTGGCCAGCGTCAGATTGGCCACTGCGCCCCCGTTGGGCATGTAACGCACATCCGGTTCCTGT CCCAGATGTCCGACCAGAATGACTTTGTTAACGCCACGTGCTGCCATGATGAATCTCCTTACTCTGTTGT TTTGTCTTTAAAAACCATCACCCGTTGAGTTGCCGGGGCCGCGGTTTTGACTTTGTGCGGGGACCTGCTG AACCTGCCCCCTGGTTGTTACCTTCACCCGTTTGAGAGCCGTTCGCCGCAAGGGCAAAGACGCCACGGCC TGACGCATCTGTCCGGGGCAGGACACAAAAGTTTTTGCGGTTCCATGCAAAAAGTTTTGTGGACTGTTCA TTACACCCTGGACAGCCAATGCGACAGGTTGTGGCTATGTCAGCCCGGGCGAATGGACTCAAACGGGTGA TTCGGGTACCAGGGGAAAGGAGCAGGCACCCGCCGCAACGATGGAACGCGCGGGCGCGAAACGGCGTTGC CCTGCAGAGTGCCGGCAGTCCTTCGCCGGCACGGTGAAAGCGGCGCGGCCGGAACGGTCGCAGCAAGCGC TGCCGTTGACCTCAGACATCAGACACTAGCCGGCAGGCCCGAAACCGCCTGGCGGGTTCGGCGGAGCTTA CCGCGTCTTTTCGCGGTTAGCGGAGTGTGGCTCGACGACTGAACCGCGCCAGCGGGTCAGGAGCCGAAGG TGGCCCCGGTGCAGATTGTGTGAAAAGAAAGTTAAACAGAGGAAGAGCTGCAGCAAGATGGAGAGTACCG GTCTGGTCAGGTCAGGTCAGGTCAGGACTGAGATTCGCCCTTCTCTTTTCTGTACTGAACAACGCAGTAC CAGGCAGAAGCCAGGAAAGCGAAAACGGTGATCAGGGCACGAAATTCGTCACCCGGCTCTTTCCCCTTCA GCATCAGCGTTATGATGATGCCGGCAACGATAATCCACGCAATGCCACTCCAGAGGCGCAGCTTATCCGC CACGACATTAATCAGAACAAAAGCAACGGCCAGGATAGCCCCCCACAGAGCCGGAACAGGCTGAAACGGA ATAAAAAACAGGTTAATGCCGGTTAAAAGCGTCACGGCAGCAAACATCAGAGACATACGCACAGATTACC CTCCCTGGACACACTGAGTAAGAAAATCAATTCTGCTGATCATCGCCCGGTTTATTATATTCGGGCGCAT TTGCGCGCGGCAGCTGCTGACTGTTCAGTCGATGTACGCAGAGCCGTTCACGGAAATACTCGCGCAGGTG TTCAGGCTGTTCCCGTTCAACAAGTTCCGGCATGACGGGCTTGTTCATGCGTTCCTGCCAGGCAACAGCA GCGGCCACCTTATCGACGGCAACTTTGTCCTGCTCCTCTTTTGAAAAAGAGGCAATATTCCACTGCGACA TACCCAAATTCCGCAAAAGAAGAAAGGGTACGCAGATATTACGCTCTTAATTCTTAACTGGCGACCTGTT GAGGTGAGGCCTGTACGCAGCGCCGCAGGCGTGGCGAACCGCCTCACCGGCAGGCGAAGCCTGCCAGGAT TTTCGCGCGGCCGCACCGATCTGCGAAGCCGGGTAAGCTCCCCACAGATCGTGCCGTCTCAGACCTTAAA CGGGACGTCGGGCGCCCCGATGTAGTATCAGTCAAGAGCCGCGTAAATAGCTGCGCATTCGTCATGAGAG TCAATGAAATCCCACAGCTGCGATTCCCGCAGCATCAGGTGGCGTGTCAGGGCAGCATCACCGCGTTCAT GGTGCAGCCAGATACGGCGGTTGATCGCCAGAGCCGTAATGATAACTCCGGCCGCATCCGCGCTGACGGA CCGATCAAACCAGTTATCCGGGTTAGTCAGATGGAAACGGTCACCGTCAGGCATCATGTAGCCGCCGCCC TCCGGAATTCGGATGAAATGCCAGAAGCCTCCGCAGTAATCGGTGATGTGTTTCACAGCGAGCGCATAGA CCTGCATCTCTCCGGCCAGAAAATCGTTACCAAACAGATCCGGCAGGAACGAGAGACGGTCGGACTCCTC AACATTCAGCATGGTTTGACGGGCATGATACATAGCAACCTCCACAGGTTCATAAGATTGCGGCACCGGG TTGTGCCGTGCCGACACGACAGCCCGGCGGAAAGCGGAAGACGCAGGGGCGACACCGGAGGCCGCAGCGC AGATAAAGCACGAAGCTAGTCTGGACGGTTTTCGAGCGAAACCTGAGCGAGAAAACGACGGGAAGAACAG CGAGCATCATCAGTAACCTGCGACCGGGCGAGGATGGCGGCGTCAGCGAACCCTTGCATCTGCAGCGGCC GGGTAAAGTGAAGGCACAGCACTACCCGTCGCGATGCAGAGGTTGAATAAAAGGTTTGTCTAACCCGTAT TTCGACCACAGGGAGAAAAGCGGAAGCAAATGTCGCAACGCGACAGACGCAGGAATCAGGCCACAGACCG GAGGGATGGGGCCGGGTGAAGCGGAGTCGGCGGCAACGACAAGCCGGTGACGTCCTTATCCGGTGTTGAT GGCACGGCGCCGGTTTATCAGTTGCCCGTCACCAGGCGATCCGGGAGACCTCTCGTTCTGAGCTTACCGG CGATCTGGTTTATCACTGGCCACGGAGATACCAATATACATACCGCTTCCCCAGATAATCTGGGAGAGCA CAAATATCCACTGAGGGACGTCAACAATCAACAGCGGAAGAAGAGCAACCGTCACGATTAAAATCAGGCG GCTACCGAATTGCCGGCGCACCGGTTCAGCGGCGTCAACCGGGACGCCTGCATATCGCAGAACCTGCCTT AAACCCGTATTCATAATCACTCCACTCAGAATAAATACACTGTACTTCAGTATATTACATTTTATTAGAT AACGATTCTCCGGGCTGGCAGTGATCCTTCTGAAATTTCCCTGTTTTTGCAGGAACAGCAAATGGTTACA GACAACGGCAACAAGATGACTTGAAAAAAAACGGCCTCCGCAAAATAATACTGTATATATATACAGTTTC AAGCAAGGGGAAAATACGATGAAGTTCATTCCTGCAGTATCAGAAGCCAGCATAGTAAAAATTCCTTTGT TCACAGAGCGATGCCCTGCGGGTTTTCCGTCACCGGCTGCGGACTACACTGAGTCTGAACTGGATCTGAA TGAGTACTGCATTCACCGGCGCCACTCCACCTATTTTGTCAGGGCGATTGGCAACTCAATGACTGATATT GGCCTCTATTCCGGCGATCTGATGGTCGTGGATAAAGCAGAACAGCCGCGGCACGGGGATATTGTTATCG CGGAAATTGAGGGTGAATTTACGGTAAAACGCCTGCTTCTGACGCCACGGCCGGCCTTGCAGGCGATGAA CCCGGACTTCCCTTCCCTGTACCCGGATCCGGAAACGCTGCAAATTTTCGGTGTGGTGACGGCCTTCATT CATAAAACCCGGGGGACAGACTGA
Region Details
| Region | 2 |
| Region Length | 7.3Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 37871-45174 |
| # tRNA | 0 |
| # Total Proteins | 12 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 4 |
| Phage + Hypothetical Protein % | 83.3% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 3 |
| Most Common Phage Name(hit genes count) | PHAGE_Entero_P1_NC_005856(3) PHAGE_Escher_HK639_NC_016158(1) PHAGE_Cronob_ENT39118_NC_019934(1) PHAGE_Entero_HK140_NC_019710(1) PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1) PHAGE_Pectob_ZF40_NC_019522(1) PHAGE_Ralsto_RSF1_NC_028899(1) PHAGE_Klebsi_phiKO2_NC_005857(1) PHAGE_Salmon_SJ46_NC_031129(1) PHAGE_Pseudo_YuA_NC_010116(1) PHAGE_Vibrio_X29_NC_024369(1) PHAGE_Salmon_SEN34_NC_028699(1) PHAGE_Pseudo_M6_NC_007809(1) PHAGE_Pseudo_MP1412_NC_018282(1) PHAGE_Xantho_vB_XveM_DIBBI_NC_017981(1) |
| First Most Common Phage # | 3 |
| First Most Common Phage % | 25% |
| GC % | 55.13% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Region DNA
>3 45174-50425 ATGTTCGCCCTGGCCGACGTCAACTCCTTCTACGCCAGTTGCGAGAGGGTTTTCAGGCCGGATTTGCGCG GAAAACCGGTCGTCGTTCTCAGTAACAACGATGGCTGCGTTATTGCCCGGAGTGCTGAAGCCAAACGGCT GGGTATAAAGATGGGAACCCCCTGGTTCCAGCTCAAAGAGGCGCAGTTTCCTGAAAAACTGTACGTTTTT TCCAGCAATTACGAGCTCTACGCTAGCCTGAGTAACCGCGTGGTCGCCCTGCTGGAGGAGCTGTCTCCCC GCGTCGAACAATACTCGATAGACGAATGTTTCCTGGATGCCCGGGGAATTGGCCAATGTATGGATCTGGA GGATTTTGGCAGGCAGCTGCGTGGGCACGTTCTCAGTGGAACCGGACTGACGATCGGTGTCGGCTGCGGC GCCACAAAAACACTGGCCAAATCGGCGCAGTGGGCGTCAAAGGAATGGCCACAATTCAGGGGGGTGCTGG CGCTGTCGCCCGATAATCCACGCAGGACGGCAAAATTACTCAGCCTGCAGCCGGTGGAAGAAATCTGGGG CGTGGGGAACCGGATAGCGAAAAAGCTGCACGTTATGGGGATCACCACCGCCCTGCAGCTGTCGCTGACG AACCCCGCGTTTATCCGCAAAAACTTCAACGTAGTGCTGGAGCGCACGGTACGTGAGCTGAACGGCGAGA GTTGCATTTCACTGGAGGAAGCGCCGCCGCCGAAACAGCAGATTGTCTGCAGTCGCAGCTTCGGGCAGCG GATCACCACCTATGAAGAAATGCGCCAGGCCGTCTGCCAGTACGCCGAGCGCGCAGCAGAAAAGTTGCGA GGTGAGCGGCAGTACTGCCGGCATATCAGCATCTTCATCAAAACCTCCCCTTTTGCGGTTAATGAACCGT ACTACGGTAACGTGGCCACTGAGAAACTGAACACCCCTACCCGTGACACCCGGGACATTATAGCGGCAGC GGTCAGGTCTCTGGACAGGATCTGGCTCGATGGCCACCGCTACGCAAAAGCGGGGATAATGCTCAATGAT TTCAGCCCGAACGGCGTTGCACAGCTGAATCTGTTCGATGACGTGCAGCCACGGCCGCACAGCGATGCGC TGATGAAGGTGCTCGACGGTATTAATCATTCCGGACTCGGGAAAGTCTGGTTTGCCGGACGGGGTATTGC GCCGGACTGGCAGATGAAACGGGAGATGCTGTCACCGGCATATACCACCCGCTGGAAGGAGCTGCCGGTT GCCCGTTTCTGACCGTTGAAATGACAGAAGGGACTTGCCGCCAGAGCTTACTTTACCGATCATACAGATG ACTTGTCTCAGGGGGGAACCATGACAAACATCATTCTGTGTGATGTGACTGCCAGCGTCAGCGAACTTAA AAACGATCCGGTGGCCACCGCCAGTGCCGGCGGCGGCTACCCGGTCGCGATTATTGACCGCAACCGCCCT GTTTTTTATTGTGTGCCCGCGGCTCTGTATGAACAAATGCTCGATGCGCTGGACGAAAAAGACCTGGTGC AATTGATCACAGAACGTCAAAACCAGCCGCTGCGTGAAGTGGATCTCAATCAGTATCTGTGATGTGCTCC GGTGCGAGGAGCAAGGAATGTATTAAATCAATGTTAAGGAACAATATGGGTAGCAAAATCGCAGGTGTGG TTTTCTTATTCTTCACTGTCTGGGGAATGGCTTCAGTGATTGAATTGCAGTACTGGCGTAACGCTGATAC CTATCCTGTCTGGCTGACAAAACATCTCCGGATCTCTCCCGAAAATAACGAAAAGAGCCTGATAAGGATA GGAATGGAAACCTTTGACAAGGTATGTGGTGATAACAGGGGCCTCCTTGCCGTCACCCAAAAACAAAACG GTATGTTTATGCGCTGTGATGATTCCCCCGGATTTTTTTCATGGTTCAGCGGCGTTTACAAAGTCAGTTA ATCAGATAACGTGTTGGACTTTCAATATGTTACCCACACGGTTATCCCCCGTTACTGTGGATAATCAATA TATTGTGTCTCAGACAGCTGCTTTTTCTACCATATGTTGTGTCCCTGATATCCCCTCGGACGGCGTGACA AACGACATCACACTGGAGACGCTGATGACGGGACCATGTTCATCCAGGGTCGTAAGAACGGCCGGGACTG GTTACCGGCCGGACGAAGGACCGGCCAACGCGCAGCGGCGGCAGCTGGTTTTAAAAATGCTGGCGGAAAT TTAAAATTAAGCCGCACACCCCGCGAAATTTTGCAAATTTCACTCAACATGCTTCGTTCAGATCCCAACA GAGCTTTCACCATCACCTGTAGTAGCCGCCCTGCTGCGTGATTACTCCGCTCAACAGGTTGCTGGCGACA AGCCAATACCTGTTCGTGACAGGCATTGCTTAACCGTTGTCCCAAACTAATAATGTGCCGACGATGCAGG TGGGACCGTGCTCCCAGGCAGATTACCTGACCGACGACGCAGGTGGGACCGTGGTCCCAGGCAGATAAGC TGACAGACGATGCAGGTGGGACCGTGGTCCCAGGCAGATAAGCTGACAGATGACGCAGGTGGGACCGTGG TCCCAGTCAGATAACCTGACCGACGACGCAGGTGGGACCGTGGTCCCAGACAGATAACCTGACCGATGAC GCAGGTGAGACCGTGGTCCCAGGCAGATAACCTGACCGACGATGCAGGTGGGACCGTGGTCCCAGACAGA TAACCTGACCGATGACGCAGGTGGGACCGTGGTCCCAGACAGATAAGCTGACCGATGACGCAGGTGGGAC CGTGGTCCCAGGCAGATAACCTGACCGACGACGCAGGTGGGACCGTGGTCCCAGTCAGATAACCTGACCG ATGACGCAGGTGGGACCGTGGTCCCAGGCAGATAAGCTGACCGACGATGCAGGTGGGACCGTGGTCCCAG GGAGATAACCTGACCGGCGATGCAGGTGGGACCGTGGTCCAAGGCAGATAAGCTGACAGATGACGCAGGT GGGACCGTGGTCCCAGAGAGAATATTCAGGCCAGTTATGTTTTCTGGCCTGTGAGAAAGGAAATGAAGTA AAGGGAGATCACCGTAGAATAATGCGTGTCCGCATCAGACTCCTGGTTTCTCAAGCTCCTTAAGAATGGC TTCTATTTTCTCTATACACTCCGCAGGAATGCGGGACTTATCCAGGTTAAGCACCATTTTATCGCCCTTA TACAATGCTGTTGCCCCTGGAGCAAACTGATGACGTGAGCTCAGATTAACTCTTGATGCGGGAGATTGTT TCAGTACGGATGTTAAAAGACTAATGACCTCTTCAGCTTCAAAGATTAGTCCCGCTTTCTTCTGATCGTG GAGAGTCTCAGCCTGCTGCTTCAGTAATTCTTCTTTATCTGCAAAAGCCTTCTGAAGGGCTTCACCTGAC CGGGCAGACAGTTCTCCAGGATGTGCAAACAGGGCAACAACGGATTTAGGCAGTTTGGCCGTATTAATAC AGCGGGTAATGATCTTACGAGAAATGTTTTCCGCATCGGCAAGCGCAGAAATATTTCCTGCAAACTCATT CTGCAGCCGGCTTGTATAACGCAGGCCACGTTCATAAGCACTCGTCGGCCGATAATCGTTACCCAGTCGG GACAATGCAGCCATCTGCTCATCGTCCAGTTCACCAACCAGAACGCGATAATCACTTTCCGTCAGGATTG CGGCTTTACGGCGACGGCTGCCGTCTGCAATTTCTATGACATCAGAAACCCGGCGGCCGAAAGCTGGAGT CTGCTGACCGGTCAGTAAAAATGAAGGAATGAGATCATCCAGAGCATCTTCGGTAAGTAGTTCCTGATCG CGCTCATTGCCTGACCATACGCGTGAAGCGCTCTCAACAGAGTCTCCCCGGAGCACCTCAAGGGTAAATT TTACTTCCCGTCCACTTACCGGAAGAGAGATTGCATTACCGCGGGCCATAGCACCCACGCGCGCAATTAA TGAATCCACCATCGGCGCGGCCGGCGCCGGTGATGAAGTATCTTCAGTCGATTGAGTATGTGTGGTATGT CTTGGAATGACAGGAGCACGCTTCATTATCTAATCTCCCAGCGTGGTTTAATCAGACGATCAAAAATCTC ATTGCAAACAGGCTCCCAGATAGAGAGGGCATTACGCCAGGCACCGGTTGAAGAACGTTGATCAATAGCC TGTTCAAAAACGGTTCTCATACGGATCTGACCTTTGCCGACTTCATCCGTTTCGCGCACAACATTTTTAA GGACCATGCTTCCCCAGGCATCCCGAATTTGTTCTTCCATCCACGGGGACTGCGAGCCATTATTATTACT GTATTTGGTAAGCAGAATACGGACATCTGGCTCGAAGCCTTTAAGATCCACGTTCTTAAGCAGGTCACGA AGCATATCGAAAAACTGCAGTGCGGAGGTGTAGTCGAACAGCTCTGCCGGAGTAGGGACAATCAGAACAT CAGCAGCGCATACAACATTTATCGTACCGATACCAAGGTTGGGTGCGCTGTCGATAACTATCACGTCATA ATCATGAGCGACAGTTTCAATGGCCAGACGGAGCATCAGGTGCGGGTCAGCAGGTAATTTGCCTTCGTCA AATTTCCCCATCAGCTCGGTTTCAATGCGGTGCAGTGCCAGACAGGACGGGATGATATCAAGGCCAGGCC AGCAGGTGGGCTTTATAGCGTAGCTGGCGTCATCCTTTTCCCCAAGATAAAAGGGCAGGAGAGTGTCCTC AGCATGAATATGAAGATCGGGCACCCATCCGTGATACATAGAAGCAGTTCCCTGTGGGTCATTGCCTTCA ACAAGCAGAACACGGAGTCCTTTCAGAGCAAGATCCTGAGCCAGGTGAACGGATACTGAGGTTTTGTAAA CACCACCTTTGTGAGCTGCAACGCCAATCACCGGCGGAAACGCATCTTCAGCACGGCGCAGTCGTGTACC AAATACATCCCGCATGTGATTGATTTGTTCGATGGTATAACCAACGCGTTGCTCAACTCTCCCACGGGTT TCCATATCAGGGTGCGGCAGCCGGCCAGCTTTCTCGGCATCCCTGATAGCCTGAGATGACACGCCAACTA AATCTGCCGCTTCACCAATCCTCCAGCGCCGGGTTATTTTCCGGGCTTCCGGACTGTCATCATTAAACTG TGCAATGGCGATTGCTTTCGTCATTTCATGACCAGCACTTATGCACTGGTTGAGTGTATCCATGAGTCCC AT
Region Details
| Region | 3 |
| Region Length | 5.2Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 45174-50425 |
| # tRNA | 0 |
| # Total Proteins | 5 |
| # Phage Hit Proteins | 3 |
| # Hypothetical Proteins | 1 |
| Phage + Hypothetical Protein % | 80% |
| # Bacterial Proteins | 1 |
| Attachment Site | no |
| # Phage Species | 2 |
| Most Common Phage Name(hit genes count) | PHAGE_Entero_N15_NC_001901(2) PHAGE_Yersin_PY54_NC_005069(2) PHAGE_Klebsi_phiKO2_NC_005857(2) PHAGE_Salmon_SJ46_NC_031129(2) PHAGE_Cronob_ENT39118_NC_019934(1) PHAGE_Entero_P1_NC_005856(1) PHAGE_Brevib_Sundance_NC_028749(1) PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1) PHAGE_Bacill_SPbeta_NC_001884(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 40% |
| GC % | 52.80% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Region DNA
>4 51176-55496 ATGACGAGCGAAAATAACAGCTTACTTCTGAACCTTCAGGAGGTTGATAAGACAACCGGTGAAGTTGTTA AGCTGGATGTCAACAGCACCAGTACCGTGCAGCCAGTAGCGCTCATGAGACTCGGTCTCTTCGTCCCAAC TCTGAAATCAACAGGGAAGAGCAAGGCGAACCGGAAAAACGTTACAGACGCGACTGAGGAGCTTGTACAG CTGTCCATTGCCAAAAGCGAAGGATACACTGACGTTAAGATCACCGGTTCGCGTCTTGATATGGACACGG ATTTTAAAGTCTGGCTGGGGATAATTCGCTCCATGTCGGAGTATGGGGTAAAAAGTGACACCCTGGAACT GTCGTTCGTCGAATTCGTTAAGATGTGCGGATTTGACTCCCGTCGTTCAAACAAAAAAATGCGCGATCGC ATCAGTAATTCCCTGTTTAAACTCGCCTCGGTTACGCTGAAGTTCCAGAGCGAGACCAAAGGATGGACCA CACATCTGGTGCAGTCAGCCTATTATGACATCAACGAGGATATCGTTGAGATCAAGGCTGAACCTAAGCT GTTTGAGCTTTACCACATGGACAGAAGGGTACTGCTGCGGCTGAAAGCCATTGACGCCCTGCAGCGCAAG GAATCAGCCCAGGCGCTTTATACCTACATCGAAAGTCTTCCCCAGAATCCTGCACCTATTTCCATGAAAC GGATGCGTGACCGGCTGAATCTCACCTCAAATGTCTATACGCAGAACCACACGGTACGTAAGGCGATGGA GCAGCTGCGGGATATTGGTTATCTGGATTACACTGAGTTTAAACGTGGCCGAGCCACCTATTTCAGCGTG CATTATCGCAACCCCAAACTCATCAGTGGTCCTGTGAAGGTTCCGCGCAAAGAGGAAGAAGAGAAGGCGC CAGAGCAAAATTATGACGAAGTCATTAAGGCGCTGAAGGCTGCTGGCATCGATCCCCTTAAACTGGCCGA AGCTCTCTCAGCGATGAAGCCAGAAAATTGACTGCGATATGCATAACATGACTGCCGGATGCCGCTAAGG ACATTCCATTGACTGTGATATGCATCACGCATACCGCAGTCAATATGTGTTCTCCATCATGTCTGCCATG ATCGAACAATATTGACTGTCATATGTGATTTCAGGCCGTGATACGCAGATATTGACTACGGTATGCGGGT TTAACGGCGATATTCCCAGGTCTGTGCACTGCTCCACACGTGTTAACATGCCACAGTCAATTTTTCAGTA AAGCTCTATACCCCTTACGAAAATCTCAATCGGATGCTGAGACGGTCATGTTACCTGACGGTATCCGTTC CCCTGTGTATTGCAGGTTTAGCCCGGCAGGATGAGACTGCAGCTGTCTGTATAACCCGGCGCCAGCTTCA CACTGCTAAATGCGAACAGGAGACCGATGGCAGAAGGGAGTGAGCCACAGGGGTGAATGACTTTCGCAAT TAACGGGATGATTCACTGAGCTTTCAGGAAACAATACACTGTGGGATGTACGGCCTGTGTCCTGTCTTGT CTGCGGTATGTCGATGCCTGCAGGCTTGCAGGTCACCGGGTAAGACCACGGCGGTTCAGTCATCAGCATG ATGGACTGGTGTGCTGGAGCAGGGAGGGGGCTGAATGCGCTCTGCTCCTGTATTCCGTATTAGCGGAATA CAGGACGTCATGCCAGGCGTGTCAATCTCAGCCGGCCGGGGGCAGGGAGCGAAGGATCTCCGCGGCATCG CGACCGTCACCGGTAAAGGGAACGGCCAGGGTGGCAGCCATGTCCAGCGCAAATACCCGGGTATAGACTT CCATCGAGCGCGGATCCTTATGCCCGGCCAGTGCCTGGATGACCTTCCTGGGCTGCCGGTGATAAAGCAT GTGCATAATATAGCTGTGACGGAAAGTATGCGGCGTCACGGGGATCGAAAAATGCACGCCGTCAGCTTCA GCCCGCTTCACCGCCTGTTTCAGCCAGTTGCGCATTGTCTCATCCGTGACCGGCCATAACGGCTCACGCC GGCGGGGTCGGGTGGTGACCATCCAGCTTTCCATCTGACGCACAAAACTGGCATCCGTCAGCGGTACCAG ACGCACTTCATCTTTTGGCGGCCGGCCACGACGTGCCCGCACTTTTTCCGACAGCACCCGAACAAAAGGG CGCAGACCATCCAGGTCGAACGATTCCGGGGTGAGCGTCCGGGCTTCACCGATACGGATCCCGGTATTCC ACATGGTGGCGAACAACATGTGGTGACGCTGGTCAGGCATATACCAGAGGAGGGCGCTCACTTCCGGCGC CAGGAGGTAAGCCGGCGTGGCACCTGTTGAGGTGGCCATCCGCCGGAGTGCCACCGCGGTCGCAAAATCA ACGCCCGGGGCGATCGGCAGCAGGGAGACGCGTTCTGGTGAATTCTGCAAGGGAATGATGCTGTTCATGA GTTATTTTTCACGTAGCGCACGCACTGTTTATGGATACAGGTATTTTGCACCTGACGGGCCGATCCTGCC ATGACAATAAATCGCAGCGCGCGGATCCTTTTGTTGTCTTATCCCGCATTATTGCGGGTAAAACCAAATA CGTAAAGGATCCTTTTTCTGCTCAGATCCTCCATGAAGCCAGTAATGACGCGGGTTGATGGCTGTTTTAC GGTTTTTGGGAGAATTGGAGTAATGCCAGGATGTACATGTTAGGCAGGAAAAAGAAGAGAAGAGAGCGCT ACGCGATTTCCGGCCTGGTACACCCCTGTAACCTTGCGGGATTTCGCGTAACGCTTTCATAAGTTTACAA CAGAAGAGAAAAGATATTTGCTGAAAAATGAAGTCCGTAAGTTAAATAAAAAATCATGATCCGTCCGGCA CTATGTACTTAGCTGTCGTTTAGGTCTTAGGTGTTTTTGCTAAATTACGATGGTATCCCTTGTCAGAGTA ATCTGGCTTGTCCTGCACATCTTCAGGTGACAATCCAGTGCAATTTCAGGGGTTAATCCTTTTGTCGTCA GCAGAATCTATCTATAAACGGGCTGTTTGTTGGTTCGCCAGAAGGAAAAAATTTAGCGTCTGAAGTGGTC AACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGGTTTTCTGATTCGTTTGGCGGTAACCCACC ATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAACGATATAGTCCGTTATTGCGTGAGCTGCATCG CTGAAGCTTACATAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGC TGTTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCGCCACAGTAACTGCCGGAA CTGCCTGCTCGTATAATGGCTGCCTTGATCCGAATGAACCAGCACCTGTTTTTGGGGATTACGCCGCCAT ACAGCCATCAGCAGTGCGTTCAGGACAATGTCCTTTGTCATCCGGGATTGCATGGACCAGCCGATAATTT TGCGTGAGAACAGATCAACAACCACGGCAAGATACAGCCAGCCTTCGTGGGTCCTGATATAGGTTATGTC GGTTACCCAACGCTCATCCGGAGCATCCGGATTGAACTGTCGCTGGAGCCTGTTGGGCGACACGATACTG GCCTCGCCTTTACGTGCCCGCGGGCTCCGGTATCCGACCTGAGCCTTTATCCCGACACGTTTCATCAGTC GCCAGACTCTGTTCACTCCGCACTGTTGCCCGCTGTCCCGCAGATCCAGATGGATCTTGCGATAACCATA GACGCATCCCGATTCCAGCCAGAACTGTTTAATCTGTCCTGTCAGTCTCAGGTCTGCCTGATGGCGTTGT GAATGCGGCTGCTGAAGCCAGGCGTAAAAGCCACTGGGATGAACATCCAGCACCCGACAGAGCAGGCGAA CAGGCCAGCAACGGGCGTTGTCACGGATAAAGGCGAAGCAGGAAAATCGTCTTGAACGTCAGCTGCAGCA ACTGAGTTATGCGCGGGTGCTTATCCTGGATGAAATAGGTTATCTGCCAATGAACCGTGAGGAGGCGAGT CTGTTCTTCCGGCTGCTGAACCGCCGGTATGAAAAAGCGAGCATCATCCTGACGTCAAACAAAGGGTTCG CCGACTGGGGTGAAATGTTCGGTGATAACGTGCTGGCGACGGCGATCCTGGATCGTCTTCTGCATCACTC AACGACGCTGAACATAAAAGGAGAAAGCTATCGGTTGAAAGAGAAACGCAAAGCCGGAGTGCTGGCAAAA AGCGCAACGCCAATCAGTGATGATGAAATGGTGGAAAGCGGACAACGTTAA
Region Details
| Region | 4 |
| Region Length | 4.3Kb |
| Completeness(score) | incomplete(30) |
| Specific Keyword | recombinase,transposase |
| Region Position | 51176-55496 |
| # tRNA | 0 |
| # Total Proteins | 4 |
| # Phage Hit Proteins | 4 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | no |
| # Phage Species | 4 |
| Most Common Phage Name(hit genes count) | PHAGE_Shigel_SfIV_NC_022749(1) PHAGE_Shigel_Sf6_NC_005344(1) PHAGE_Salmon_SJ46_NC_031129(1) PHAGE_Entero_P1_NC_005856(1) PHAGE_Salmon_SSU5_NC_018843(1) PHAGE_Entero_fiAA91_ss_NC_022750(1) PHAGE_Brevib_Jenst_NC_028805(1) |
| First Most Common Phage # | 1 |
| First Most Common Phage % | 25% |
| GC % | 51.91% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|CP014697.2| Klebsiella quasipneumoniae strain ATCC 700603 plasmid pKQPS1, 152001, gc%: 52.00%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 8 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 459..470 | attL | 0.0 | Showinfo_outline |
| 2 | 2356..2631 | PHAGE_Entero_P1_NC_005856: InsA; AVR78_26540; phage(gi46401643) | 7.20e-61 | Showinfo_outline |
| 3 | 2550..2765 | PHAGE_Entero_P1_NC_005856: InsB; AVR78_26545; phage(gi46401642) | 2.12e-39 | Showinfo_outline |
| 4 | complement(2818..3522) | PROPHAGE_Brucel_1330: transposase, putative; AVR78_26550; phage(gi23502708) | 1.45e-51 | Showinfo_outline |
| 5 | complement(3569..4057) | PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AVR78_26555; phage(gi100060) | 1.76e-10 | Showinfo_outline |
| 6 | 4221..4787 | PHAGE_Entero_P1_NC_005856: Cin; AVR78_26560; phage(gi46401653) | 5.59e-27 | Showinfo_outline |
| 7 | complement(5563..6177) | PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; AVR78_26565; phage(gi966199034) | 8.97e-08 | Showinfo_outline |
| 8 | 15343..15354 | attR | 0.0 | Showinfo_outline |
Sequence
>459..470
AAAATGTACATT
Sequence
>2356..2631
KlebsiellaquasipneumoniaeMASVSISCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR
Sequence
>2550..2765
KlebsiellaquasipneumoniaeMSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRIRRTVVA
Sequence
>complement(2818..3522)
KlebsiellaquasipneumoniaeMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRCNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGRASAFYYGDPLGEMRLVSRVFEM
Sequence
>complement(3569..4057)
KlebsiellaquasipneumoniaeMPVDFLTTEQELNYGRYVAEPNDVQLARYFHLDERDLAFINQRRGRHNRLGIALQLTTARFLGTFLTDLTRVLPGVQQFVAVQLNIRRPEVLSRYAERDTTLREHTALIKEYYGYHEFGDFPWSFRLKRLLYTRAWLSNERPGLMFDFATAWLLQNKGHCCK
Sequence
>4221..4787
KlebsiellaquasipneumoniaeMRLFGYARVSTSQQSLDIQIRALKNAGVKANRIFTDKASGSSAAREGLELLRMKVEDGDVILVKKLDRLGRDTADMIQLIKEFDALGVAVRFIDDGISTDGEMGKMIVTILSAVAQAERTRIFERTNEGRIEAKSKGIKFGRKRKIDRNKIKFMHDKGTGATEIAKHMGIARSTVYKIINSERSPIND
Sequence
>complement(5563..6177)
KlebsiellaquasipneumoniaeMTKHKVFISYHHANDQWYKNELEKMNDVFDIFVNRSVSLGDIDEEEEPQKIREIIRDEYLRDTSALILLVGTETKNRKHVDWELYSSMRDSPRNGKSGIFIINLPSTGTNNIRASHGENEKNEFHPNITEWITINDRTTYKEIYPYMPERVIDNLMSEKSYISIVNWDQIHNNPENLRKMIELTYQDKDKCEYVFSTPMRMRNG
Sequence
>15343..15354
AAAATGTACATT
Region 2, total 12 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 37871..38350 | PHAGE_Ralsto_RSF1_NC_028899: putative transglycosylase SLT domain protein; AVR78_26755; phage(gi971753985) | 7.58e-07 | Showinfo_outline |
| 2 | complement(38388..38918) | PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; AVR78_26760; phage(gi162135127) | 2.69e-09 | Showinfo_outline |
| 3 | complement(39543..40376) | N-6 DNA methylase; AVR78_26765 | 0.0 | Showinfo_outline |
| 4 | complement(40423..40674) | hypothetical protein; AVR78_26770 | 0.0 | Showinfo_outline |
| 5 | complement(40998..41246) | transcriptional regulator; AVR78_26775 | 0.0 | Showinfo_outline |
| 6 | complement(41295..41837) | PHAGE_Entero_P1_NC_005856: Ssb; AVR78_26780; phage(gi46401640) | 1.57e-63 | Showinfo_outline |
| 7 | complement(41954..42276) | hypothetical protein; AVR78_26785 | 0.0 | Showinfo_outline |
| 8 | complement(42512..42832) | hypothetical protein; AVR78_26790 | 0.0 | Showinfo_outline |
| 9 | complement(42867..43121) | PHAGE_Entero_P1_NC_005856: Hot; AVR78_26795; phage(gi46401721) | 1.21e-21 | Showinfo_outline |
| 10 | complement(43358..43783) | PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; AVR78_26800; phage(gi162135127) | 1.53e-14 | Showinfo_outline |
| 11 | complement(44304..44534) | hypothetical protein; AVR78_26805 | 0.0 | Showinfo_outline |
| 12 | 44749..45174 | PHAGE_Entero_P1_NC_005856: HumD; AVR78_26810; phage(gi46401723) | 5.73e-16 | Showinfo_outline |
Sequence
>37871..38350
KlebsiellaquasipneumoniaeMRKQLVLATLLLISTPAWAADCFDMAGRDYRIDSDLLRAISWQESKWKVNAIGKNPGSGYGAGLMQIDSQHQGELSQYGIKPGHLLTDACLNIYTGAYYLALAFKKWGVSWEAVGAYNAGFRRSDRQAIRRLEYARKIEAIYLAIKRNKNAGQSSLTKN
Sequence
>complement(38388..38918)
KlebsiellaquasipneumoniaeMRTMKVNTATRESDELFKTDKYLRCAVTNGKARLDFIPDLFFTPLADNMAASWLRQHSEYNGGSWSYWVIPQGVGGNIAPNSIQFINTQTGYIAPEGEQRYRMCIPGNYFEGEVSADAAGIIATLMIMNRLSWHVAEMGPQYDQICRRLVSRQDALKDYISIIQHPERHLIWRAID
Sequence
>complement(39543..40376)
KlebsiellaquasipneumoniaeMSQMNFADVFNLARETADNSPVIQAGLQIAEQVPAVHRMMSAQYSRGRFISVFKDTGRHLGRWEVFSDFLSLAASELDMARIRTPESMEHCRKICARYEAADVANMQEMFCLMVCALEAKFHDFLGAIFMELDLGDNFRGQYFTPYSVQCLMARMLMPGVRDTIRREGIATVSDPACGAAGMLIAYAECLLEADINPSMHMFGSCIDIDPVAADMAFIQLSLLGIAAEVMTGNTLTMQIRRVRYTPVFYLNDFEKRLTDLRRFRAMRDFMRGIQEAA
Sequence
>complement(40423..40674)
KlebsiellaquasipneumoniaeMSGVAAGGRRLAALQQLLSEQPRRHQRNLRDDIAAQEIDPVLKAFGRHIARSVRKGRGVHIPAMNNTAFGQVLRTLELKRACN
Sequence
>complement(40998..41246)
KlebsiellaquasipneumoniaeMDHNVLSPLESLPDGTFTREQAQIVAAQYQNVAIEDDQGTHFRLVVRHQDDGSMVWRVWNFEPGGEDMMNRYIRDYGVRKTQ
Sequence
>complement(41295..41837)
KlebsiellaquasipneumoniaeMAARGVNKVILVGHLGQEPDVRYMPNGGAVANLTLATSETWRDKQTGEMRENTEWHRVVMFGKLAEVAGEYLRKGAQVYIEGQLRTRNWQDDAGVTRYVTEVLVGQNGTLQMLGGRRESGVPESTAQPQSPAAPAQPAQAPAKSPKAKGGKKGRQDAAPSQQPPQPLPDDFPPMDDDAPF
Sequence
>complement(41954..42276)
KlebsiellaquasipneumoniaeLLRPFRPRRFHRAGEGLPALCRATPFRARAFHRCGGCLLLSPGTRITRLSPFARADIATTCRIGCPGCNEQSTKLFAWNRKNFCVLPRTDASGRGVFALAANGSQTGGA
Sequence
>complement(42512..42832)
KlebsiellaquasipneumoniaeMRMSLMFAAVTLLTGINLFFIPFQPVPALWGAILAVAFVLINVVADKLRLWSGIAWIIVAGIIITLMLKGKEPGDEFRALITVFAFLASAWYCVVQYRKEKGESQS
Sequence
>complement(42867..43121)
KlebsiellaquasipneumoniaeMSQWNIASFSKEEQDKVAVDKVAAAVAWQERMNKPVMPELVEREQPEHLREYFRERLCVHRLNSQQLPRANAPEYNKPGDDQQN
Sequence
>complement(43358..43783)
KlebsiellaquasipneumoniaeMYHARQTMLNVEESDRLSFLPDLFGNDFLAGEMQVYALAVKHITDYCGGFWHFIRIPEGGGYMMPDGDRFHLTNPDNWFDRSVSADAAGVIITALAINRRIWLHHERGDAALTRHLMLRESQLWDFIDSHDECAAIYAALD
Sequence
>complement(44304..44534)
KlebsiellaquasipneumoniaeMNTGLRQVLRYAGVPVDAAEPVRRQFGSRLILIVTVALLPLLIVDVPQWIFVLSQIIWGSGMYIGISVASDKPDRR
Sequence
>44749..45174
KlebsiellaquasipneumoniaeMKFIPAVSEASIVKIPLFTERCPAGFPSPAADYTESELDLNEYCIHRRHSTYFVRAIGNSMTDIGLYSGDLMVVDKAEQPRHGDIVIAEIEGEFTVKRLLLTPRPALQAMNPDFPSLYPDPETLQIFGVVTAFIHKTRGTD
Region 3, total 5 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 45174..46445 | PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; AVR78_26815; phage(gi431811050) | 0.0 | Showinfo_outline |
| 2 | 46524..46775 | plasmid stabilization protein; AVR78_26820 | 0.0 | Showinfo_outline |
| 3 | 46829..47134 | hypothetical protein; AVR78_26825 | 0.0 | Showinfo_outline |
| 4 | complement(48288..49259) | PHAGE_Entero_N15_NC_001901: ParB; AVR78_26830; phage(gi9630491) | 1.38e-103 | Showinfo_outline |
| 5 | complement(49259..50425) | PHAGE_Entero_N15_NC_001901: plasmid partition protein SopA; AVR78_26835; phage(gi9630492) | 0.0 | Showinfo_outline |
Sequence
>45174..46445
KlebsiellaquasipneumoniaeMFALADVNSFYASCERVFRPDLRGKPVVVLSNNDGCVIARSAEAKRLGIKMGTPWFQLKEAQFPEKLYVFSSNYELYASLSNRVVALLEELSPRVEQYSIDECFLDARGIGQCMDLEDFGRQLRGHVLSGTGLTIGVGCGATKTLAKSAQWASKEWPQFRGVLALSPDNPRRTAKLLSLQPVEEIWGVGNRIAKKLHVMGITTALQLSLTNPAFIRKNFNVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGQRITTYEEMRQAVCQYAERAAEKLRGERQYCRHISIFIKTSPFAVNEPYYGNVATEKLNTPTRDTRDIIAAAVRSLDRIWLDGHRYAKAGIMLNDFSPNGVAQLNLFDDVQPRPHSDALMKVLDGINHSGLGKVWFAGRGIAPDWQMKREMLSPAYTTRWKELPVARF
Sequence
>46524..46775
KlebsiellaquasipneumoniaeMTNIILCDVTASVSELKNDPVATASAGGGYPVAIIDRNRPVFYCVPAALYEQMLDALDEKDLVQLITERQNQPLREVDLNQYL
Sequence
>46829..47134
KlebsiellaquasipneumoniaeMGSKIAGVVFLFFTVWGMASVIELQYWRNADTYPVWLTKHLRISPENNEKSLIRIGMETFDKVCGDNRGLLAVTQKQNGMFMRCDDSPGFFSWFSGVYKVS
Sequence
>complement(48288..49259)
KlebsiellaquasipneumoniaeMKRAPVIPRHTTHTQSTEDTSSPAPAAPMVDSLIARVGAMARGNAISLPVSGREVKFTLEVLRGDSVESASRVWSGNERDQELLTEDALDDLIPSFLLTGQQTPAFGRRVSDVIEIADGSRRRKAAILTESDYRVLVGELDDEQMAALSRLGNDYRPTSAYERGLRYTSRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFAHPGELSARSGEALQKAFADKEELLKQQAETLHDQKKAGLIFEAEEVISLLTSVLKQSPASRVNLSSRHQFAPGATALYKGDKMVLNLDKSRIPAECIEKIEAILKELEKPGV
Sequence
>complement(49259..50425)
KlebsiellaquasipneumoniaeMGLMDTLNQCISAGHEMTKAIAIAQFNDDSPEARKITRRWRIGEAADLVGVSSQAIRDAEKAGRLPHPDMETRGRVEQRVGYTIEQINHMRDVFGTRLRRAEDAFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDASYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPADPHLMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNNNGSQSPWMEEQIRDAWGSMVLKNVVRETDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR
Region 4, total 4 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 51176..52186 | PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; AVR78_26840; phage(gi410491479) | 1.43e-115 | Showinfo_outline |
| 2 | complement(52883..53623) | PHAGE_Brevib_Jenst_NC_028805: putative recombinase XerD; AVR78_26845; phage(gi971744895) | 8.40e-06 | Showinfo_outline |
| 3 | complement(54254..54880) | PROPHAGE_Escher_CFT073: transposase insF; AVR78_26850; phage(gi26250329) | 1.45e-95 | Showinfo_outline |
| 4 | 55122..55496 | PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; AVR78_26855; phage(gi557307613) | 8.96e-82 | Showinfo_outline |
Sequence
>51176..52186
KlebsiellaquasipneumoniaeMTSENNSLLLNLQEVDKTTGEVVKLDVNSTSTVQPVALMRLGLFVPTLKSTGKSKANRKNVTDATEELVQLSIAKSEGYTDVKITGSRLDMDTDFKVWLGIIRSMSEYGVKSDTLELSFVEFVKMCGFDSRRSNKKMRDRISNSLFKLASVTLKFQSETKGWTTHLVQSAYYDINEDIVEIKAEPKLFELYHMDRRVLLRLKAIDALQRKESAQALYTYIESLPQNPAPISMKRMRDRLNLTSNVYTQNHTVRKAMEQLRDIGYLDYTEFKRGRATYFSVHYRNPKLISGPVKVPRKEEEEKAPEQNYDEVIKALKAAGIDPLKLAEALSAMKPEN
Sequence
>complement(52883..53623)
KlebsiellaquasipneumoniaeMNSIIPLQNSPERVSLLPIAPGVDFATAVALRRMATSTGATPAYLLAPEVSALLWYMPDQRHHMLFATMWNTGIRIGEARTLTPESFDLDGLRPFVRVLSEKVRARRGRPPKDEVRLVPLTDASFVRQMESWMVTTRPRRREPLWPVTDETMRNWLKQAVKRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILRSLPPAG
Sequence
>complement(54254..54880)
KlebsiellaquasipneumoniaeMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNPDAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWRRNPQKQVLVHSDQGSHYTSRQFRQLLWRYRIRQSMSRRGNCWDNSPMERFFRSLKNEWVPATGYVSFSDAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNAVASFC
Sequence
>55122..55496
KlebsiellaquasipneumoniaeMKAKQENRLERQLQQLSYARVLILDEIGYLPMNREEASLFFRLLNRRYEKASIILTSNKGFADWGEMFGDNVLATAILDRLLHHSTTLNIKGESYRLKEKRKAGVLAKSATPISDDEMVESGQR
Klebsiella quasipneumoniae strain ATCC 700603 plasmid pKQPS1
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 152001 bps
Phages: 4
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Locus 1: attL (Region 1)
Locus: attLORF Start: 459
ORF Stop: 470
Strand: Forward
Protein Sequence: AAAATGTACATT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 2: AVR78_26540 (Region 1)
Locus: AVR78_26540ORF Start: 2356
ORF Stop: 2631
Strand: Forward
Protein Sequence: MASVSISCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AVR78_26540, InsA, phage(gi46401643), PHAGE_Entero_P1_NC_005856
Homolog/Ortholog E-Value: 7.20e-61
Locus 3: AVR78_26545 (Region 1)
Locus: AVR78_26545ORF Start: 2550
ORF Stop: 2765
Strand: Forward
Protein Sequence: MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRIRRTVVA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AVR78_26545, InsB, phage(gi46401642), PHAGE_Entero_P1_NC_005856
Homolog/Ortholog E-Value: 2.12e-39
Locus 4: AVR78_26550 (Region 1)
Locus: AVR78_26550ORF Start: 2818
ORF Stop: 3522
Strand: Backward
Protein Sequence: MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRCNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGRASAFYYGDPLGEMRLVSRVFEM
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: AVR78_26550, transposase, putative, phage(gi23502708), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 1.45e-51
Locus 5: AVR78_26555 (Region 1)
Locus: AVR78_26555ORF Start: 3569
ORF Stop: 4057
Strand: Backward
Protein Sequence: MPVDFLTTEQELNYGRYVAEPNDVQLARYFHLDERDLAFINQRRGRHNRLGIALQLTTARFLGTFLTDLTRVLPGVQQFVAVQLNIRRPEVLSRYAERDTTLREHTALIKEYYGYHEFGDFPWSFRLKRLLYTRAWLSNERPGLMFDFATAWLLQNKGHCCK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AVR78_26555, hypothetical protein, phage(gi100060), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 1.76e-10
Locus 6: AVR78_26560 (Region 1)
Locus: AVR78_26560ORF Start: 4221
ORF Stop: 4787
Strand: Forward
Protein Sequence: MRLFGYARVSTSQQSLDIQIRALKNAGVKANRIFTDKASGSSAAREGLELLRMKVEDGDVILVKKLDRLGRDTADMIQLIKEFDALGVAVRFIDDGISTDGEMGKMIVTILSAVAQAERTRIFERTNEGRIEAKSKGIKFGRKRKIDRNKIKFMHDKGTGATEIAKHMGIARSTVYKIINSERSPIND
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AVR78_26560, Cin, phage(gi46401653), PHAGE_Entero_P1_NC_005856
Homolog/Ortholog E-Value: 5.59e-27
Locus 7: AVR78_26565 (Region 1)
Locus: AVR78_26565ORF Start: 5563
ORF Stop: 6177
Strand: Backward
Protein Sequence: MTKHKVFISYHHANDQWYKNELEKMNDVFDIFVNRSVSLGDIDEEEEPQKIREIIRDEYLRDTSALILLVGTETKNRKHVDWELYSSMRDSPRNGKSGIFIINLPSTGTNNIRASHGENEKNEFHPNITEWITINDRTTYKEIYPYMPERVIDNLMSEKSYISIVNWDQIHNNPENLRKMIELTYQDKDKCEYVFSTPMRMRNG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AVR78_26565, hypothetical protein, phage(gi966199034), PHAGE_Entero_vB_IME197_NC_028671
Homolog/Ortholog E-Value: 8.97e-08
Locus 8: attR (Region 1)
Locus: attRORF Start: 15343
ORF Stop: 15354
Strand: Forward
Protein Sequence: AAAATGTACATT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
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Locus 1: AVR78_26755 (Region 2)
Locus: AVR78_26755ORF Start: 37871
ORF Stop: 38350
Strand: Forward
Protein Sequence: MRKQLVLATLLLISTPAWAADCFDMAGRDYRIDSDLLRAISWQESKWKVNAIGKNPGSGYGAGLMQIDSQHQGELSQYGIKPGHLLTDACLNIYTGAYYLALAFKKWGVSWEAVGAYNAGFRRSDRQAIRRLEYARKIEAIYLAIKRNKNAGQSSLTKN
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AVR78_26755, putative transglycosylase SLT domain protein, phage(gi971753985), PHAGE_Ralsto_RSF1_NC_028899
Homolog/Ortholog E-Value: 7.58e-07
Locus 2: AVR78_26760 (Region 2)
Locus: AVR78_26760ORF Start: 38388
ORF Stop: 38918
Strand: Backward
Protein Sequence: MRTMKVNTATRESDELFKTDKYLRCAVTNGKARLDFIPDLFFTPLADNMAASWLRQHSEYNGGSWSYWVIPQGVGGNIAPNSIQFINTQTGYIAPEGEQRYRMCIPGNYFEGEVSADAAGIIATLMIMNRLSWHVAEMGPQYDQICRRLVSRQDALKDYISIIQHPERHLIWRAID
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AVR78_26760, hypothetical protein, phage(gi162135127), PHAGE_Pseudo_YuA_NC_010116
Homolog/Ortholog E-Value: 2.69e-09
Locus 3: AVR78_26765 (Region 2)
Locus: AVR78_26765ORF Start: 39543
ORF Stop: 40376
Strand: Backward
Protein Sequence: MSQMNFADVFNLARETADNSPVIQAGLQIAEQVPAVHRMMSAQYSRGRFISVFKDTGRHLGRWEVFSDFLSLAASELDMARIRTPESMEHCRKICARYEAADVANMQEMFCLMVCALEAKFHDFLGAIFMELDLGDNFRGQYFTPYSVQCLMARMLMPGVRDTIRREGIATVSDPACGAAGMLIAYAECLLEADINPSMHMFGSCIDIDPVAADMAFIQLSLLGIAAEVMTGNTLTMQIRRVRYTPVFYLNDFEKRLTDLRRFRAMRDFMRGIQEAA
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: AVR78_26765, N-6 DNA methylase
Homolog/Ortholog E-Value: N/A
Locus 4: AVR78_26770 (Region 2)
Locus: AVR78_26770ORF Start: 40423
ORF Stop: 40674
Strand: Backward
Protein Sequence: MSGVAAGGRRLAALQQLLSEQPRRHQRNLRDDIAAQEIDPVLKAFGRHIARSVRKGRGVHIPAMNNTAFGQVLRTLELKRACN
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AVR78_26770, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 5: AVR78_26775 (Region 2)
Locus: AVR78_26775ORF Start: 40998
ORF Stop: 41246
Strand: Backward
Protein Sequence: MDHNVLSPLESLPDGTFTREQAQIVAAQYQNVAIEDDQGTHFRLVVRHQDDGSMVWRVWNFEPGGEDMMNRYIRDYGVRKTQ
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: AVR78_26775, transcriptional regulator
Homolog/Ortholog E-Value: N/A
Locus 6: AVR78_26780 (Region 2)
Locus: AVR78_26780ORF Start: 41295
ORF Stop: 41837
Strand: Backward
Protein Sequence: MAARGVNKVILVGHLGQEPDVRYMPNGGAVANLTLATSETWRDKQTGEMRENTEWHRVVMFGKLAEVAGEYLRKGAQVYIEGQLRTRNWQDDAGVTRYVTEVLVGQNGTLQMLGGRRESGVPESTAQPQSPAAPAQPAQAPAKSPKAKGGKKGRQDAAPSQQPPQPLPDDFPPMDDDAPF
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AVR78_26780, Ssb, phage(gi46401640), PHAGE_Entero_P1_NC_005856
Homolog/Ortholog E-Value: 1.57e-63
Locus 7: AVR78_26785 (Region 2)
Locus: AVR78_26785ORF Start: 41954
ORF Stop: 42276
Strand: Backward
Protein Sequence: LLRPFRPRRFHRAGEGLPALCRATPFRARAFHRCGGCLLLSPGTRITRLSPFARADIATTCRIGCPGCNEQSTKLFAWNRKNFCVLPRTDASGRGVFALAANGSQTGGA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AVR78_26785, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 8: AVR78_26790 (Region 2)
Locus: AVR78_26790ORF Start: 42512
ORF Stop: 42832
Strand: Backward
Protein Sequence: MRMSLMFAAVTLLTGINLFFIPFQPVPALWGAILAVAFVLINVVADKLRLWSGIAWIIVAGIIITLMLKGKEPGDEFRALITVFAFLASAWYCVVQYRKEKGESQS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AVR78_26790, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 9: AVR78_26795 (Region 2)
Locus: AVR78_26795ORF Start: 42867
ORF Stop: 43121
Strand: Backward
Protein Sequence: MSQWNIASFSKEEQDKVAVDKVAAAVAWQERMNKPVMPELVEREQPEHLREYFRERLCVHRLNSQQLPRANAPEYNKPGDDQQN
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AVR78_26795, Hot, phage(gi46401721), PHAGE_Entero_P1_NC_005856
Homolog/Ortholog E-Value: 1.21e-21
Locus 10: AVR78_26800 (Region 2)
Locus: AVR78_26800ORF Start: 43358
ORF Stop: 43783
Strand: Backward
Protein Sequence: MYHARQTMLNVEESDRLSFLPDLFGNDFLAGEMQVYALAVKHITDYCGGFWHFIRIPEGGGYMMPDGDRFHLTNPDNWFDRSVSADAAGVIITALAINRRIWLHHERGDAALTRHLMLRESQLWDFIDSHDECAAIYAALD
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AVR78_26800, hypothetical protein, phage(gi162135127), PHAGE_Pseudo_YuA_NC_010116
Homolog/Ortholog E-Value: 1.53e-14
Locus 11: AVR78_26805 (Region 2)
Locus: AVR78_26805ORF Start: 44304
ORF Stop: 44534
Strand: Backward
Protein Sequence: MNTGLRQVLRYAGVPVDAAEPVRRQFGSRLILIVTVALLPLLIVDVPQWIFVLSQIIWGSGMYIGISVASDKPDRR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AVR78_26805, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 12: AVR78_26810 (Region 2)
Locus: AVR78_26810ORF Start: 44749
ORF Stop: 45174
Strand: Forward
Protein Sequence: MKFIPAVSEASIVKIPLFTERCPAGFPSPAADYTESELDLNEYCIHRRHSTYFVRAIGNSMTDIGLYSGDLMVVDKAEQPRHGDIVIAEIEGEFTVKRLLLTPRPALQAMNPDFPSLYPDPETLQIFGVVTAFIHKTRGTD
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AVR78_26810, HumD, phage(gi46401723), PHAGE_Entero_P1_NC_005856
Homolog/Ortholog E-Value: 5.73e-16
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Locus 1: AVR78_26815 (Region 3)
Locus: AVR78_26815ORF Start: 45174
ORF Stop: 46445
Strand: Forward
Protein Sequence: MFALADVNSFYASCERVFRPDLRGKPVVVLSNNDGCVIARSAEAKRLGIKMGTPWFQLKEAQFPEKLYVFSSNYELYASLSNRVVALLEELSPRVEQYSIDECFLDARGIGQCMDLEDFGRQLRGHVLSGTGLTIGVGCGATKTLAKSAQWASKEWPQFRGVLALSPDNPRRTAKLLSLQPVEEIWGVGNRIAKKLHVMGITTALQLSLTNPAFIRKNFNVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGQRITTYEEMRQAVCQYAERAAEKLRGERQYCRHISIFIKTSPFAVNEPYYGNVATEKLNTPTRDTRDIIAAAVRSLDRIWLDGHRYAKAGIMLNDFSPNGVAQLNLFDDVQPRPHSDALMKVLDGINHSGLGKVWFAGRGIAPDWQMKREMLSPAYTTRWKELPVARF
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AVR78_26815, DNA polymerase, phage(gi431811050), PHAGE_Cronob_ENT39118_NC_019934
Homolog/Ortholog E-Value: 0.0
Locus 2: AVR78_26820 (Region 3)
Locus: AVR78_26820ORF Start: 46524
ORF Stop: 46775
Strand: Forward
Protein Sequence: MTNIILCDVTASVSELKNDPVATASAGGGYPVAIIDRNRPVFYCVPAALYEQMLDALDEKDLVQLITERQNQPLREVDLNQYL
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: AVR78_26820, plasmid stabilization protein
Homolog/Ortholog E-Value: N/A
Locus 3: AVR78_26825 (Region 3)
Locus: AVR78_26825ORF Start: 46829
ORF Stop: 47134
Strand: Forward
Protein Sequence: MGSKIAGVVFLFFTVWGMASVIELQYWRNADTYPVWLTKHLRISPENNEKSLIRIGMETFDKVCGDNRGLLAVTQKQNGMFMRCDDSPGFFSWFSGVYKVS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AVR78_26825, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 4: AVR78_26830 (Region 3)
Locus: AVR78_26830ORF Start: 48288
ORF Stop: 49259
Strand: Backward
Protein Sequence: MKRAPVIPRHTTHTQSTEDTSSPAPAAPMVDSLIARVGAMARGNAISLPVSGREVKFTLEVLRGDSVESASRVWSGNERDQELLTEDALDDLIPSFLLTGQQTPAFGRRVSDVIEIADGSRRRKAAILTESDYRVLVGELDDEQMAALSRLGNDYRPTSAYERGLRYTSRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFAHPGELSARSGEALQKAFADKEELLKQQAETLHDQKKAGLIFEAEEVISLLTSVLKQSPASRVNLSSRHQFAPGATALYKGDKMVLNLDKSRIPAECIEKIEAILKELEKPGV
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AVR78_26830, ParB, phage(gi9630491), PHAGE_Entero_N15_NC_001901
Homolog/Ortholog E-Value: 1.38e-103
Locus 5: AVR78_26835 (Region 3)
Locus: AVR78_26835ORF Start: 49259
ORF Stop: 50425
Strand: Backward
Protein Sequence: MGLMDTLNQCISAGHEMTKAIAIAQFNDDSPEARKITRRWRIGEAADLVGVSSQAIRDAEKAGRLPHPDMETRGRVEQRVGYTIEQINHMRDVFGTRLRRAEDAFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDASYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPADPHLMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNNNGSQSPWMEEQIRDAWGSMVLKNVVRETDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AVR78_26835, plasmid partition protein SopA, phage(gi9630492), PHAGE_Entero_N15_NC_001901
Homolog/Ortholog E-Value: 0.0
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Locus 1: AVR78_26840 (Region 4)
Locus: AVR78_26840ORF Start: 51176
ORF Stop: 52186
Strand: Forward
Protein Sequence: MTSENNSLLLNLQEVDKTTGEVVKLDVNSTSTVQPVALMRLGLFVPTLKSTGKSKANRKNVTDATEELVQLSIAKSEGYTDVKITGSRLDMDTDFKVWLGIIRSMSEYGVKSDTLELSFVEFVKMCGFDSRRSNKKMRDRISNSLFKLASVTLKFQSETKGWTTHLVQSAYYDINEDIVEIKAEPKLFELYHMDRRVLLRLKAIDALQRKESAQALYTYIESLPQNPAPISMKRMRDRLNLTSNVYTQNHTVRKAMEQLRDIGYLDYTEFKRGRATYFSVHYRNPKLISGPVKVPRKEEEEKAPEQNYDEVIKALKAAGIDPLKLAEALSAMKPEN
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AVR78_26840, putative replication protein RepA, phage(gi410491479), PHAGE_Salmon_SSU5_NC_018843
Homolog/Ortholog E-Value: 1.43e-115
Locus 2: AVR78_26845 (Region 4)
Locus: AVR78_26845ORF Start: 52883
ORF Stop: 53623
Strand: Backward
Protein Sequence: MNSIIPLQNSPERVSLLPIAPGVDFATAVALRRMATSTGATPAYLLAPEVSALLWYMPDQRHHMLFATMWNTGIRIGEARTLTPESFDLDGLRPFVRVLSEKVRARRGRPPKDEVRLVPLTDASFVRQMESWMVTTRPRRREPLWPVTDETMRNWLKQAVKRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILRSLPPAG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AVR78_26845, putative recombinase XerD, phage(gi971744895), PHAGE_Brevib_Jenst_NC_028805
Homolog/Ortholog E-Value: 8.40e-06
Locus 3: AVR78_26850 (Region 4)
Locus: AVR78_26850ORF Start: 54254
ORF Stop: 54880
Strand: Backward
Protein Sequence: MKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNPDAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWRRNPQKQVLVHSDQGSHYTSRQFRQLLWRYRIRQSMSRRGNCWDNSPMERFFRSLKNEWVPATGYVSFSDAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNAVASFC
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: AVR78_26850, transposase insF, phage(gi26250329), PROPHAGE_Escher_CFT073
Homolog/Ortholog E-Value: 1.45e-95
Locus 4: AVR78_26855 (Region 4)
Locus: AVR78_26855ORF Start: 55122
ORF Stop: 55496
Strand: Forward
Protein Sequence: MKAKQENRLERQLQQLSYARVLILDEIGYLPMNREEASLFFRLLNRRYEKASIILTSNKGFADWGEMFGDNVLATAILDRLLHHSTTLNIKGESYRLKEKRKAGVLAKSATPISDDEMVESGQR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AVR78_26855, IS21 transposition protein, phage(gi557307613), PHAGE_Entero_fiAA91_ss_NC_022750
Homolog/Ortholog E-Value: 8.96e-82
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download