Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1142992943

GenInfo (GI) Number: 0000000000

Download Results: 1142992943.PHASTER.zip

gi|00000000|ref|CP010082.1| Vibrio anguillarum strain 91-7154 chromosome I sequence. 3061930, gc%: 41.74%

Download summary as .txt file: summary.txt file_download

Total: 5 prophage regions have been identified, of which 0 regions are intact, 5 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
16.9Kbincomplete107425695-432613 info_outlinePHAGE_Entero_phi92_NC_023693(4)40.67%Show info_outline
235.3Kbincomplete30171388555-1423944 info_outlinePHAGE_Entero_P4_NC_001609(2)40.04%Show info_outline
32.6Kbincomplete3061559798-1562456 info_outlinePHAGE_Entero_186_NC_001317(1)44.38%Show info_outline
46.7Kbincomplete1091789955-1796753 info_outlinePHAGE_Vibrio_VCY_phi_NC_016162(4)42.04%Show info_outline
525.6Kbincomplete2082767076-2792773 info_outlinePHAGE_Entero_P4_NC_001609(2)43.22%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP010082.1| Vibrio anguillarum strain 91-7154 chromosome I sequence. 3061930, gc%: 41.74%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 7 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(425695..426636)PHAGE_Prochl_P_SSM2_NC_006883: putative nucleotide-sugar epimerase; PL84_01780; phage(gi61806184)3.27e-43Showinfo_outline
2426897..427961PHAGE_Entero_phi92_NC_023693: Phi92_gp067; PL84_01785; phage(gi726647000)5.27e-126Showinfo_outline
3427985..428863PHAGE_Entero_phi92_NC_023693: Phi92_gp066; PL84_01790; phage(gi726646999)5.21e-140Showinfo_outline
4428860..429747PHAGE_Entero_phi92_NC_023693: Phi92_gp064; PL84_01795; phage(gi726646997)2.82e-45Showinfo_outline
5429750..430295PHAGE_Entero_phi92_NC_023693: Phi92_gp065; PL84_01800; phage(gi726646998)2.53e-67Showinfo_outline
6430452..431258teichoic acid ABC transporter permease; PL84_018050.0Showinfo_outline
7431273..432613PHAGE_Bacill_G_NC_023719: gp245; PL84_01810; phage(gi593777701)5.01e-10Showinfo_outline

Region 2, total 19 CDS

#CDS PositionBLAST HitE-ValueSequence
11388555..1388567attL0.0Showinfo_outline
21403534..1404772PHAGE_Entero_P4_NC_001609: integrase; PL84_06280; phage(gi9627511)9.43e-77Showinfo_outline
3complement(1404769..1404966)PHAGE_Entero_P4_NC_001609: transcriptional regulator; PL84_06285; phage(gi9627517)2.42e-14Showinfo_outline
4complement(1405007..1405189)hypothetical protein; PL84_062900.0Showinfo_outline
5complement(1405179..1405475)PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; PL84_06295; phage(gi966197827)4.58e-23Showinfo_outline
6complement(1405551..1405976)hypothetical protein; PL84_063000.0Showinfo_outline
7complement(1405978..1406229)PHAGE_Pectob_CBB_NC_041878: hypothetical protein; PL84_06305; phage(gi100130)5.77e-12Showinfo_outline
8complement(1406285..1406500)PHAGE_Vibrio_ICP1_NC_015157: hypothetical protein; PL84_06310; phage(gi325171074)2.14e-05Showinfo_outline
9complement(1406502..1406897)hypothetical protein; PL84_063150.0Showinfo_outline
10complement(1406887..1407579)PHAGE_Erwini_phiEa2809_NC_027340: hypothetical protein; PL84_06320; phage(gi849120262)1.25e-21Showinfo_outline
11complement(1407572..1407949)PHAGE_Vibrio_X29_NC_024369: hypothetical protein; PL84_06325; phage(gi658311169)4.69e-14Showinfo_outline
12complement(1407950..1408198)hypothetical protein; PL84_063300.0Showinfo_outline
13complement(1408188..1408622)hypothetical protein; PL84_063350.0Showinfo_outline
14complement(1408633..1409325)PHAGE_Vibrio_12A4_NC_021068: hypothetical protein; PL84_06340; phage(gi481019125)1.71e-29Showinfo_outline
15complement(1409335..1409532)PHAGE_Vibrio_pYD21_A_NC_020846: hypothetical protein; PL84_06345; phage(gi472340479)1.26e-05Showinfo_outline
161409569..1410114hypothetical protein; PL84_063500.0Showinfo_outline
171410564..1411592PHAGE_Bacill_G_NC_023719: gp249; PL84_06355; phage(gi593777705)8.05e-06Showinfo_outline
181411589..1412929PHAGE_Bacill_G_NC_023719: gp350; PL84_06360; phage(gi593777806)1.28e-28Showinfo_outline
191423944..1423956attR0.0Showinfo_outline

Region 3, total 6 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1559798..1560649)PROPHAGE_Escher_MG1655: IS3 transposase B; PL84_06970; phage(gi16128284)2.28e-109Showinfo_outline
2complement(1560664..1560948)PROPHAGE_Escher_MG1655: IS3 transposase A; PL84_06975; phage(gi226524700)5.67e-35Showinfo_outline
3complement(1560982..1561245)PHAGE_Vibrio_fs2_NC_001956: putative replication protein; PL84_06980; phage(gi9630762)7.53e-09Showinfo_outline
4complement(1561256..1561789)PHAGE_Vibrio_fs2_NC_001956: putative replication protein; PL84_06985; phage(gi9630762)1.42e-15Showinfo_outline
5complement(1561792..1562025)PHAGE_Vibrio_fs1_NC_004306: hypothetical protein; PL84_06990; phage(gi23455832)3.69e-19Showinfo_outline
6complement(1562028..1562456)PHAGE_Vibrio_SHOU24_NC_023569: 3'-5' exonuclease; PL84_06995; phage(gi589890560)7.49e-47Showinfo_outline

Region 4, total 9 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1789955..1790323)PHAGE_Vibrio_VCY_phi_NC_016162: hypothetical protein; PL84_07955; phage(gi358356481)3.66e-53Showinfo_outline
21790550..1791116PHAGE_Vibrio_SHOU24_NC_023569: 3'-5' exonuclease; PL84_07960; phage(gi589890560)5.44e-69Showinfo_outline
31791119..1791337PHAGE_Vibrio_VCY_phi_NC_016162: hypothetical protein; PL84_07965; phage(gi358356471)7.39e-17Showinfo_outline
41791330..1792568PHAGE_Vibrio_VCY_phi_NC_016162: DNA replication initiation protein; PL84_07970; phage(gi358356472)1.39e-170Showinfo_outline
51792570..1792878PHAGE_Vibrio_VCY_phi_NC_016162: ssDNA-binding protein; PL84_07975; phage(gi358356473)8.71e-30Showinfo_outline
61793200..1793412hypothetical protein; PL84_079800.0Showinfo_outline
71793553..1795031hypothetical protein; PL84_079850.0Showinfo_outline
81795031..1795366hypothetical protein; PL84_079900.0Showinfo_outline
91795374..1796753PHAGE_Ralsto_PE226_NC_015297: putative phage assembly protein; PL84_07995; phage(gi327198635)4.45e-25Showinfo_outline

Region 5, total 10 CDS

#CDS PositionBLAST HitE-ValueSequence
12767076..2767087attL0.0Showinfo_outline
22781039..2782169PHAGE_Entero_P4_NC_001609: hypothetical protein; PL84_11915; phage(gi9627509)1.14e-49Showinfo_outline
3complement(2782219..2783031)PHAGE_Entero_P4_NC_001609: hypothetical protein; PL84_11920; phage(gi9627510)1.56e-36Showinfo_outline
4complement(2783212..2784858)PHAGE_Bacill_CP_51_NC_025423: putative helicase; PL84_11925; phage(gi725949597)4.43e-13Showinfo_outline
5complement(2784855..2785529)ATP-dependent endonuclease; PL84_119300.0Showinfo_outline
62785600..2785899PHAGE_Shigel_Sf6_NC_005344: gene 56 protein; PL84_11935; phage(gi41057344)8.92e-08Showinfo_outline
72785920..2786756PROPHAGE_Escher_CFT073: transposase insF; PL84_11940; phage(gi26250329)9.96e-48Showinfo_outline
82786722..2787021hypothetical protein; PL84_119450.0Showinfo_outline
92787021..2788796PHAGE_Mycoba_Panchino_NC_031281: hypothetical protein; PL84_11950; phage(gi100028)2.47e-06Showinfo_outline
102792773..2792784attR0.0Showinfo_outline
Vibrio anguillarum strain 91-7154 chromosome I sequence
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 3061930 bps
Phages: 5
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download