Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1149137213

GenInfo (GI) Number: 0000000000

Download Results:

gi|00000000|ref|NZ_CP019721.1| Veillonella parvula strain UTDB1-3 chromosome, complete genome. 2178518, gc%: 38.79%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
139.1Kbintact150391062929-1102093 info_outlinePHAGE_Bacter_Lily_NC_028841(22)38.14%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_CP019721.1| Veillonella parvula strain UTDB1-3 chromosome, complete genome. 2178518, gc%: 38.79%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 41 CDS

#CDS PositionBLAST HitE-ValueSequence
21074049..1074822PHAGE_Staphy_88_NC_007063: ORF019; B1A77_RS04840; phage(gi66396351)1.46e-75Showinfo_outline
31074819..1075235hypothetical protein; B1A77_RS048450.0Showinfo_outline
41075291..1075743MmcB family DNA repair protein; B1A77_RS048500.0Showinfo_outline
51075992..1076336hypothetical protein; B1A77_RS048600.0Showinfo_outline
61076329..1076787PHAGE_Lister_A118_NC_003216: putative methyltransferase; B1A77_RS04865; phage(gi16798837)6.41e-71Showinfo_outline
71076845..1077342hypothetical protein; B1A77_RS048700.0Showinfo_outline
81077338..1077685PHAGE_Klebsi_phiKO2_NC_005857: Gp58; B1A77_RS04875; phage(gi46402144)3.27e-05Showinfo_outline
91077682..1078107PHAGE_Strept_IC1_NC_024370: Phage protein; B1A77_RS04880; phage(gi658307783)6.36e-06Showinfo_outline
101078261..1078554PHAGE_Flavob_11b_NC_006356: endonuclease; B1A77_RS04885; phage(gi53793577)6.42e-06Showinfo_outline
111078945..1079475PHAGE_Bacter_Lily_NC_028841: terminase small subunit; B1A77_RS04890; phage(gi971748253)9.18e-23Showinfo_outline
121079509..1081413PHAGE_Bacter_Lily_NC_028841: terminase large subunit; B1A77_RS04895; phage(gi971748254)4.41e-145Showinfo_outline
131081422..1081667PHAGE_Bacter_Lily_NC_028841: hypothetical protein; B1A77_RS04900; phage(gi971748255)1.21e-06Showinfo_outline
141081677..1083284PHAGE_Bacter_Lily_NC_028841: portal protein; B1A77_RS04905; phage(gi971748256)2.05e-131Showinfo_outline
151083277..1084359PHAGE_Bacter_Lily_NC_028841: Clp protease-like protein; B1A77_RS04910; phage(gi971748257)1.92e-49Showinfo_outline
161084359..1084697PHAGE_Bacter_Lily_NC_028841: hypothetical protein; B1A77_RS04915; phage(gi971748258)5.30e-05Showinfo_outline
171084711..1085760PHAGE_Bacter_Lily_NC_028841: major capsid protein; B1A77_RS04920; phage(gi971748259)7.21e-37Showinfo_outline
181085775..1086011hypothetical protein; B1A77_RS049250.0Showinfo_outline
191086011..1086364PHAGE_Bacter_Lily_NC_028841: hypothetical protein; B1A77_RS04930; phage(gi971748261)1.48e-05Showinfo_outline
201086352..1086885PHAGE_Bacter_Lily_NC_028841: tail protein; B1A77_RS04935; phage(gi971748262)5.01e-12Showinfo_outline
211086885..1087364PHAGE_Bacter_Lily_NC_028841: hypothetical protein; B1A77_RS04940; phage(gi971748263)5.44e-05Showinfo_outline
221087374..1087601hypothetical protein; B1A77_RS049450.0Showinfo_outline
231087602..1089041PHAGE_Bacter_Lily_NC_028841: tail sheath; B1A77_RS04950; phage(gi971748265)3.37e-130Showinfo_outline
241089058..1089591PHAGE_Bacter_Lily_NC_028841: tail tube; B1A77_RS04955; phage(gi971748266)3.10e-32Showinfo_outline
251089614..1089910PHAGE_Bacter_Lily_NC_028841: hypothetical protein; B1A77_RS04960; phage(gi971748267)2.65e-08Showinfo_outline
261090080..1092416PHAGE_Bacter_Lily_NC_028841: tail tape measure; B1A77_RS04965; phage(gi971748269)9.19e-13Showinfo_outline
271092409..1092612PHAGE_Bacter_Lily_NC_028841: tail protein; B1A77_RS04970; phage(gi971748270)2.33e-21Showinfo_outline
281092616..1093776PHAGE_Bacter_Lily_NC_028841: late control protein; B1A77_RS04975; phage(gi971748271)1.59e-59Showinfo_outline
291093766..1094230PHAGE_Bacter_Lily_NC_028841: baseplate assembly protein; B1A77_RS04980; phage(gi971748272)7.91e-05Showinfo_outline
301094240..1094716PHAGE_Bacter_Lily_NC_028841: tail terminator; B1A77_RS04985; phage(gi971748273)1.85e-21Showinfo_outline
311094719..1095030PHAGE_Bacter_Lily_NC_028841: baseplate wedge protein; B1A77_RS04990; phage(gi971748274)6.53e-12Showinfo_outline
321095027..1096148PHAGE_Bacter_Lily_NC_028841: baseplate protein; B1A77_RS04995; phage(gi971748275)1.64e-97Showinfo_outline
331096145..1096804PHAGE_Bacter_Lily_NC_028841: tail protein; B1A77_RS05000; phage(gi971748276)3.32e-29Showinfo_outline
341096814..1097710PHAGE_Bacter_Lily_NC_028841: tail protein; B1A77_RS05005; phage(gi971748277)1.19e-16Showinfo_outline
35complement(1098002..1098853)PHAGE_Synech_Syn5_NC_009531: integrase; B1A77_RS05010; phage(gi148724460)4.45e-15Showinfo_outline
361098880..1099269hypothetical protein; B1A77_RS050150.0Showinfo_outline
371099271..1099411hypothetical protein; B1A77_RS101600.0Showinfo_outline
381099428..1099979hypothetical protein; B1A77_RS050200.0Showinfo_outline
391099972..1100364hypothetical protein; B1A77_RS050250.0Showinfo_outline
401100365..1100940PHAGE_Prochl_Syn33_NC_015285: hypothetical protein; B1A77_RS05030; phage(gi326783428)8.91e-11Showinfo_outline
Veillonella parvula strain UTDB1-3 chromosome, complete genome
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 2178518 bps
Phages: 1
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Portal Protein
Coat Protein
Tail Shaft
Attachment Site
Phage-like Protein
Hypotheical Protein
Fiber Protein
Plate Protein

Download data as .txt file: png_input file_download