Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1150468531

GenInfo (GI) Number: 0000000000

Download Results: 1150468531.PHASTER.zip

gi|00000000|ref|CP019773.1| Klebsiella pneumoniae subsp. pneumoniae strain KPN_KPC_HUG_07 208528, gc%: 52.93%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 1 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
136.4Kbintact1302839339-75820 info_outlinePHAGE_Stx2_c_1717_NC_011357(3)55.50%Show info_outline
234.1Kbincomplete3032132904-167016 info_outlinePHAGE_Entero_P1_NC_005856(4)52.37%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP019773.1| Klebsiella pneumoniae subsp. pneumoniae strain KPN_KPC_HUG_07 208528, gc%: 52.93%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 32 CDS

#CDS PositionBLAST HitE-ValueSequence
139339..39351attL0.0Showinfo_outline
2complement(42240..42737)PHAGE_Bacill_Bp8p_C_NC_029121: putative dihydrofolate reductase; B1U44_28990; phage(gi985761486)1.16e-33Showinfo_outline
342882..43895PHAGE_Mycoba_Butters_NC_021061: integrase; B1U44_28995; phage(gi479336499)2.26e-12Showinfo_outline
4complement(43854..44033)transcriptional regulator; B1U44_290000.0Showinfo_outline
544098..44448transposase; B1U44_290050.0Showinfo_outline
644574..45134PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; B1U44_29010; phage(gi100061)7.62e-69Showinfo_outline
745137..48103PROPHAGE_Xantho_33913: Tn5041 transposase; B1U44_29015; phage(gi21231545)8.67e-46Showinfo_outline
848170..48547N-acetyltransferase; B1U44_290200.0Showinfo_outline
9complement(48748..49407)PHAGE_Stx2_vB_EcoP_24B_NC_027984: Cat; B1U44_29025; phage(gi937456276)3.11e-167Showinfo_outline
1049461..49652hypothetical protein; B1U44_290300.0Showinfo_outline
1149631..49729glycosyl transferase; B1U44_290350.0Showinfo_outline
1249686..49961PHAGE_Entero_P1_NC_005856: InsA; B1U44_29040; phage(gi46401643)7.08e-63Showinfo_outline
1349880..50383PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; B1U44_29045; phage(gi557307573)1.15e-118Showinfo_outline
1450385..50615His-Xaa-Ser system protein HxsD; B1U44_290500.0Showinfo_outline
1550615..52003PHAGE_Erwini_vB_EamM_Asesino_NC_031107: chaperone for long tail fiber formation; B1U44_29055; phage(gi100168)4.27e-05Showinfo_outline
1651996..53108PHAGE_Campyl_CP21_NC_019507: radical SAM domain-containing protein; B1U44_29060; phage(gi422935302)3.17e-07Showinfo_outline
1753105..53740His-Xaa-Ser repeat protein HxsA; B1U44_290650.0Showinfo_outline
1854297..54674PHAGE_Stx2_c_1717_NC_011357: truncated transposase; B1U44_29070; phage(gi209447151)2.21e-76Showinfo_outline
1954671..55018PHAGE_Stx2_c_1717_NC_011357: transposase; B1U44_29075; phage(gi209447152)8.81e-76Showinfo_outline
2055068..56605PHAGE_Stx2_c_1717_NC_011357: transposase; B1U44_29080; phage(gi209447153)0.0Showinfo_outline
2156673..57020PHAGE_Stx2_c_1717_NC_011357: transposase; B1U44_29085; phage(gi209447153)2.73e-67Showinfo_outline
2257048..57060attR0.0Showinfo_outline
2358500..58511attL0.0Showinfo_outline
24complement(58841..60574)PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; B1U44_29090; phage(gi371496158)1.53e-19Showinfo_outline
25complement(60582..61529)acetamidase; B1U44_290950.0Showinfo_outline
26complement(61574..63178)peptide ABC transporter substrate-binding protein; B1U44_291000.0Showinfo_outline
27complement(63191..64111)glutathione ABC transporter permease GsiC; B1U44_291050.0Showinfo_outline
28complement(64111..64959)peptide ABC transporter permease; B1U44_291100.0Showinfo_outline
29complement(64956..65549)response regulator; B1U44_291150.0Showinfo_outline
30complement(65546..66673)regulator; B1U44_291200.0Showinfo_outline
31complement(66958..67125)integrase; B1U44_291250.0Showinfo_outline
3275820..75831attR0.0Showinfo_outline

Region 2, total 34 CDS

#CDS PositionBLAST HitE-ValueSequence
1132904..132918attL0.0Showinfo_outline
2141700..142779PHAGE_Spirop_SkV1_CR2_3x_NC_009987: hypothetical protein; B1U44_29580; phage(gi160688404)1.08e-08Showinfo_outline
3142786..142968hypothetical protein; B1U44_295850.0Showinfo_outline
4complement(142957..143331)hypothetical protein; B1U44_295900.0Showinfo_outline
5complement(143387..143713)PHAGE_Rhodob_RcapNL_NC_020489: hypothetical protein; B1U44_29595; phage(gi461475014)4.42e-17Showinfo_outline
6complement(143710..144438)plasmid SOS inhibition protein A; B1U44_296000.0Showinfo_outline
7complement(144435..144866)plasmid SOS inhibition protein B; B1U44_296050.0Showinfo_outline
8complement(144911..146969)PHAGE_Gordon_Hedwig_NC_031099: RNA polymerase binding protein; B1U44_29610; phage(gi100054)4.77e-07Showinfo_outline
9complement(147039..147287)transcriptional regulator; B1U44_296150.0Showinfo_outline
10complement(147336..147878)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; B1U44_29620; phage(gi100049)6.19e-64Showinfo_outline
11complement(147903..147998)single-stranded DNA-binding protein; B1U44_296250.0Showinfo_outline
12complement(148134..148310)hypothetical protein; B1U44_296300.0Showinfo_outline
13148548..148643hypothetical protein; B1U44_296350.0Showinfo_outline
14complement(148654..149217)PHAGE_Thalas_BA3_NC_009990: hypothetical protein; B1U44_29640; phage(gi160700596)3.83e-22Showinfo_outline
15complement(149265..150620)hydrolase; B1U44_296450.0Showinfo_outline
16complement(150672..150902)hypothetical protein; B1U44_296500.0Showinfo_outline
17complement(150994..151221)hypothetical protein; B1U44_296550.0Showinfo_outline
18complement(151240..151668)single-stranded DNA-binding protein; B1U44_296600.0Showinfo_outline
19complement(152005..152322)hypothetical protein; B1U44_296650.0Showinfo_outline
20complement(152357..152611)PHAGE_Escher_HK639_NC_016158: DNA pol III theta; B1U44_29670; phage(gi356870660)3.30e-22Showinfo_outline
21complement(152848..153273)PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; B1U44_29675; phage(gi162135127)1.98e-14Showinfo_outline
22complement(153457..153735)hypothetical protein; B1U44_296800.0Showinfo_outline
23complement(153794..154024)hypothetical protein; B1U44_296850.0Showinfo_outline
24complement(154258..155742)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; B1U44_29690; phage(gi100001)1.95e-36Showinfo_outline
25complement(155742..155993)hypothetical protein; B1U44_296950.0Showinfo_outline
26156148..156573PHAGE_Cronob_ENT39118_NC_019934: protein umuD; B1U44_29700; phage(gi431811072)6.78e-32Showinfo_outline
27156573..157844PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; B1U44_29705; phage(gi431811050)0.0Showinfo_outline
28157923..158138plasmid stabilization protein; B1U44_297100.0Showinfo_outline
29complement(158161..159359)PROPHAGE_Escher_Sakai: putative transposase; B1U44_29715; phage(gi38704244)7.61e-64Showinfo_outline
30159573..159807hypothetical protein; B1U44_297200.0Showinfo_outline
31complement(159834..160796)hypothetical protein; B1U44_297250.0Showinfo_outline
32complement(160796..161767)PHAGE_Yersin_PY54_NC_005069: partitioning protein SpyB; B1U44_29730; phage(gi33770536)9.74e-114Showinfo_outline
33complement(161767..162933)PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; B1U44_29735; phage(gi46402111)0.0Showinfo_outline
34167016..167030attR0.0Showinfo_outline
Klebsiella pneumoniae subsp
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 208528 bps
Phages: 2
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download