Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1159308525
GenInfo (GI) Number: 0000000000
Download Results: 1159308525.PHASTER.zip
gi|00000000|ref|NZ_CP018783.1| Curtobacterium pusillum strain AA3 chromosome, complete genome. 3973750, gc%: 70.87%
Download summary as .txt file: summary.txt file_download
Total: 2 prophage regions have been identified, of which 0 regions are intact, 2 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8.8Kb | incomplete | 40 | 8 | 2108098-2116941 info_outline | PHAGE_Agroba_Atu_ph07_NC_042013(1) | 71.28% | Show info_outline |
| 2 | 9.5Kb | incomplete | 10 | 10 | 2694400-2703942 info_outline | PHAGE_Entero_DE3_NC_042057(1) | 72.81% | Show info_outline |
Region DNA
>1 2108098-2116941 TCAGTGCTCGATGACCGCGAGGACGTCGCGGGCCGAGAGGACGAGGAGGTCCTCGCCCGA GTACTTGACCTCGGTGCCGCCGTACTTCGAGTAGATGACCTTGTCACCCACGGCGACGTC GAGCGGGACGCGGTTGCCGTTGTCGTCGATACGACCCGGACCCACGGCGACGACCTCGCC CTCCTGGGGCTTCTCCTTCGCGGTGTCCGGGATGACCAGACCGGAAGCAGTGGTCTGCTC CGCCTCGACCTGGCGGATGACGATGCGATCCTCGAGCGGCTTGATGCTGACGGCCACGGT GACCTCTTCTTTCTCGGTACAGACTCGGTACAGATGAAAACCGGGTTGGCACTACGCACA GGAGAGTGCCAACTGCCCCAACTCTAGGGCGTCGTTGGCACTCGGTCAATCCGAGTGCCA ACGTCCGACCGGGCTCTCGGCGACCTGGGAGGATCGTCGGGTGGAAGCCGCCGATCTCGC CCAGTTGCTGACCCCCGAGGGGATGGCCCTGCTCGACCGTACCCCGGCCGTGTCCGACGG CGGTGAGATCGTCCGGGTCGTCTCACGACTGCGGTCCGAGGGACACGACCCCGGACTCGT GGCGGCGGTGCTGACGCAGGCCAGGCTCCGGCAGAAGGCCCGCGGGAAGTTCGGGGACTT CGCCGCCCGCATGCTCTTCACCGAGGCCGGTCTCGAACAAGCAACCCGGCTGCAGGTCGC CGCGCAGCACGCCGGACGCTTCGCAGCAGCCGGGCTGACGCGCGTCGCGGACCTCGGGTG CGGCATCGGCGGGGACGCGATGGCGATGGCCGCGCTCGACCTCGAGGTCACGGCGGTCGA CCGTGACGAGGTGACCGCGGCCGTCGCGACCCACAACCTCGCGCTCTGGCCGAGTGCGCG CGTGGAACTCGGCGACGCAGCCGAGTTCGACCTGTCGCGGGTCGACGGCGTCTGGATGGA CCCGGCGCGGCGGACCTCCGGGCACACGAACACGAAGCGGCTCGCCGACCCGGACGACTG GTCCCCGTCGCTCGACACCGTGTTCGCGAGCGCGACGACGACCCCGACCGGCGTGAAGCT CGGTCCGGGCGTCGACCGCGACCTGATCCCCGACACCGCCGAGGCGCAGTGGACGTCGGT CGACCGCGAGGTCGTCGAACTCGCCCTCTGGTTCGGCCCGCTCGCCCGGCCCGGCATCCG TCGCGCAGCCACCGTCATCGGGTCGCACGGCATCGCGGAGCTCACGGGCGCCGCGGACGC TCTCGACGAGGAAGTCGGGCCGCTCGGCGCGTACCTCTACGAGCCGGATGGCGCCGTGAT CCGCGCGCGGCTCATCGGGGACCTCGCACGCTCGCTGGGTGGCCACATGCTGTCCGACGG CATCGCGTACGTCACCTCGGACCAGGCGGTCACGACACCGTTCGCGCAGGGCTTCCGGGT CGTCGACACGCTGCCGCTCGACGTGAAGCAGCTCGCCGCGCGGCTGGCCGCGGACGACAT CGGCACCGTCGAGATCAAGAAGCGCGGCGTCGACGTCGATCCGGCGCAGTTCCGGAAGCG GTTGCGGCTGCGCGGACGCGGTCGCGTCACGCTCGTGCTCACCCGCCTGGAGGGACGACA CACCGCGATCCTGTGCGAGCGGCTCACCGACGGGGCCGGGTAGGGCGCGGGGCGCTCCGC CCGGGTCGCGACCGCGGTCGCCGTCGCGGTCGCGCTCACGGTCGCGGTGCGAGTCGGGTC CGCACAACGCAAGTGGCCTCGAACCGCGGGATTCCGCGGTTCGAGGCCACTTCGGTTGTG CGAACAGCCGGGTCAGCCGATGAAGGCGCCCGAGTCGTAGCCGTAGTCGTAGTTGCTCGA GTTGCCCGCGGCCACCCCGATGATGATGAACAGCCCGACGATCAGGATGAAGAGGCCGGT GAGGACCCAGCCGCCGATCACACCGGCGAGCGCCAGGCCCCGTCCGCCCTCACCCGACTG CTTGATCTTGCCGAGGGCGATGTGCCCCATGATCGCGCCGGCGGGGCTCGTCAGGATGAT GAGCGGCCAGATGATGATGCCGCCGAACGCGAAGACGATCGACAGGATGGCGAGCACGTT CGTCTTCGGACGCTGCGCGTAGGGCTGGTAGCCGCCCGGAGCGTAGGCCGGCGCCGCGTA CGGGTTCGATCCCTGCTGGGCACCGTACGGGTTCGCGTTCGGCTGCTGCGGGGCGGCGTA CGGGTTGCTCGGGGGCGCGTACGGGTTCTGCGGTGCCGCGTAGGGGTTCTGCGGGGCGCC GTAGCCCGGCTGGCCCTGCGGGCCCGACTGCCCGGGTGCCGCGTACGGGTTGCTCGGGGC CGCGTACGGGTTCTGCGGCGCCTCCGAGGAGCCCTCGGGTGCAGACGCACCGTACTGCTG CGGCTGGCCGAACTCGGGCTGCGCGGCACTCGACGGCGCGCCCGGTTCGGGAGCCGGCTG GTTCGCGGAGGCCCCACCGTCCGGCGTCGATTCGCCCGGCTTCGGCCACTGGTTCTGATC GGACACCGTCCACCCCTCTCGGCACCTCGGTCGTCGGTGCCCTGTGAATCCTCCCACACA CGCGGGAGCAGGGCCCGAACGCACACACGGCCCGATCGGGTCGAGCGCGCCCGGTCTCAG ACCTGGACGGTCGTCACCGGCAACGTCGAGTCCGCCGCGATCCCGAGGTCGCTCGGTGCG TGGCCCTCGGCGACGAGCCGGGCACCGACGGCTGCGATCATCGCTCCGTTGTCGGTGCAG AGGTCGAACGGCGGGATCCGGAGCGCGACCCCGGCCGCGGCGCAGCGTTCCTCGGCCACC GCGCGCAGCCGGGCGTTCGCCACCACCCCGCCGCCGAGCAGCAGCCGGTCGACCCCGGTG TCCCTGCAGGCGTTCAGCGCCTTCGTCAGCAGGACGTCGACCACGGCCTCCCGGAAGCTG GCGGCGACGTCGGCCACGGGGACCTCGCGCCCCTCGTCACGGCAGCGCTCGACCCACCGC GCCACCGCGGTCTTCAGCCCGGAGAACGAGAAGTCGTACCGGTGCGCGGCCATGTCCTTC GGCAGTGTGAGCCCGCGGGGGAACCGGATCGCGGTCGGGTCGCCGTCGGCCGCGGCCTTG TCGATCTGCGGCCCGCCCGGGTACGGCAGGCCGAGCAGCCGAGCGACCTTGTCGAACGCT TCGCCCGCGGCGTCGTCGATCGTCTCGCCGAGGAGCTCGACGTCGCCGACCAGGTCGCGC ACGAGCAGCAGGGACGTGTGCCCACCCGACACCAGGAGCGCCACCGTCGGCAGCTCGATC TCGGAGCCGTCCGTCCGCAGGACGTCGGCGCCGACGTGCCCGACGAGGTGGTTCACCCCG TACAGCGGCTTGCCCGTCGCCACGGCGAGCGCCTTCGCGGCGCCGACCCCGACCATGAGC GCACCCGCGAGGCCCGGGCCGGCGGTGACCGCGACGGCGTCGAGCTCGTCCAGGGTGACG CCGGCCTGCTCGAGTGCGGCGGACAGCGTCGGGGTCATGGCCTCGAGGTGCGCCCGCGCG GCGACCTCGGGCACGACGCCGCCGTAGCGTGCGTGCTCGTCCATGCTCGACGCGATGACG TTCGCGAGCAGGGTGGTCCCCCGCACGATGCCCACGCCGGTCTCGTCGCAGCTCGTCTCG ATGCCGAGCACGAGGGGTTCAGCTGCGGTCATCGAGGGCCTCCTGCCCGATCGGGCCGAC GGTCGACGACGGTGACGGTGCCGATGTCGGTGCCTGCGCCGCGGGTTCCAGCGCTGCCCG CATCACCCACGCGTCGACCCCGTCCGGCTGGTAGTAGCGCGGGCGTACGGCGATCCGCTC GAACCCGAACGCGGTGTACATCGCCTGGGCGACGGGGTTGTCGGCGCGGACCTCGAGGAA GACCTCGTGCACGCCGCGGCGTCGGGCCTCGGCGAGGAGCTCGGTGAAGAGCACCCGGCC GATGCCCTTCCCGCGCTGCTCGGCCGCGACCGCGATGGTCTGGACGTCGGCGACGGGGTT GCCCGCGAGCGAGGAGAGTCCGGCGTACCCGACGATCGTCGGGGCGCCGTCCTCGGTGGT CTCGACCACGACGTAGTACCCGTGCGGCGAGTACAGCTCGCCGGACATCTGCGACGCCGA CCAGGCGTCCGTCGGGAACGACGTGTGCTCGAGCCACATCACGTCGTCGAGGTCCTGCGG GTGTGCGCGCCGCAGGCGCAGCCCGTCGGGCAGGGTCACTGCTTCACCCGCTTCGGCGCA CCAGGGACCGTCACGTCGGGGTCGCGGAGGTAGAGGGGCGTGTCCTGGGCGAAGGGCGTA CCGGAGGTGAGCCGGTCCGCGGCGAGCGCGCCGAGCCTCCAGGCCGGGATGGACGCGACG GTCACGCGGTCCCAGTCCACGGCGTCCGGCCTGGAGGCACGGATCGCCTCGTCGAGGTCG TCCGGCTTCGCGAGTCCCGGACCCGCGACGCGCGTGCCGGTCTCGTCGTAGGCGCTCCAG TAGACCTCGCGCCGGCGGGCGTCCGTCAGGACGACGAACGCGCCGTCCCGGCCGGACGCA CGCTGGTCGGCCGCGACGGCGTCGTGGCTGACCAGCGGGAGGAACGGGACGCCGCGTGCC GCGGCGAAGGTGCGGGCGGCGGCGATGCCGACGCGGAGGCCGGTGAACGGCCCCGGTCCC ATCCCGGCGACGACGCCGGTGACGTCCGCTCCGGTGATGCCGGCCTCGTCGAGGACCTCG ACGAGGAACGGGCCGATCACCTCGGCGTGACGGCGGGAGTCCTCGGTGCTGCAGGTCGCG CGGGCCTGGCCGGTGGCCGGGTCGACGACGGCCACGGAGGTCCCGGCGGAGGTGTCGATG GCGAGGAGCACCCGTCCATCGTAGGCGGCGTTCACTCGTCGAGCGGGCTGCGGACGGCGT CCCAGACCTCGACTGCGACCCATCGTCCCCGACCGCCACGTCCGAACCGCGGTCGGGGTT CCAGCCATCCTCGCTCCACCGCCCGGCGGAGGAGGTTCGATGCCGTCGGTTGCGAGACGC CGAGTGCCCGCTGGACAGCGTCCGAGGTGACGACCGGGTTCCTGAACACGACGTCGACCA GACCGGAGAGTGCAGATCGATCCCCTCGCACTTCGTCTCGGTACCGCTCTCGGATCTCGA CGAGGCTCCGGATGCGTTCGGCGCTCTCCCGTGCGCGTTGTGCCACTCCCGCTGAGAAGA ACTGGATCCATTCGTCGATCTCGCCGCGCTCTCGAACACCCTGCAGACGGGCGTAGTACT CCGTTCGGTGTGCCTCGAAGTAGCCGGAGATGTGCAGGATCGGAGCCGGAAGTACCTGAT CCGCCATCAGCGAGAAGTTGATCAGCAGACGGCCGATGCGACCGTTCCCGTCGAGGAACG GATGGATCGTCTCGAACTGGTAGTGCATCAGCGCGCTCTTCACCACGATCGGCAAGGCGG ATCCGTCGTCGTTCACGAATCGTTCCCAGTCGGAGAGCAGCTCAGGGAGATGCTGCTGAT GTGGCGGGATGAACTTCGCCGTGTCGGGACGAGCATCCGGCGATCCGATCCACACCGGCG ATCTCCGGAGTTCTCCCGGGGACTTCTCCTCACCGCGGACGTCTCGCATCAGGACAGCGT GCAGTTCGGTGATGAAGCGCTGTGTGAGCGGAAGCGTCTGGAGCAGCCGCACTCCGACGT CGGCGGCTGCGAGGTAGCTGGACACCTCGCGGAGGTTGTGGTCGATGATCGGCTGGTCGG ATGTCTCCGCTGAGAGCACATCGCTCAGCGACGCTTGCGTGCCCTCGATCCGCGAGCTCG CCAGCGCTTCTTGGGCCATGGACGGACCGAGCAGGAGCTCCGGCTCCCGAACGAGCTGAC CGAGACCACCGAGGTTCCCGAGTTCGAGGGTCGCTCTCGACACCGCTGTGACGGTCTCCA TCTGAAGGTCGAGTCGACGGGGCATGATCGCCGGGAGGAAGTACGGGTGCGTCCACGCGC CCACCGCTTGCCTCGCGACGACACCGAAGCGCTCAGAGGTGAAGTCCGACGTGCGCATGC ATCCAACTATAAGCAAACGGCTTCTGGGCGAATAGCTTGCAGCCGTTAGCTCACACGCCG AATAACTTCGGCAGAAGTGATCACAAGTCGGATCCGGCGCGCATGACTTCGACAGAAGTC ATGCGCGAGTCTGCTCGTTCAGAGGCGAGGGTCCACCGGCTCCGACTCCATCGCCAGCAC ACCGAACACCGGCTGGTGCACGCGCCACAGCGGCTCACCCGCCACGAAGCGCTCGAGCGA CTCCAGGCCGAGGGCGTACTCGCGCAACGCCATCGACCGCTTGTGCCCGAGGTCACGGTC CCGCAGCCGCGCGAGGTTCGCGGGCTCGGTGTACTCCGGCCCGTAGATGATCCGCAGGTA CTCGCGCCCGCGCACCTTCACGCCCGGCTGCACGAGTCCCTTCGGCCCTCGGGTCAGGTT CCCCTCGGGCTTCACGACCGCGCCTTCGCCGCCGGCACCCGTGAGGTCCTGCCACCAGTC CGCCCCTGCTGCCCGGCTCGCCTCGTCGTCGACGTCGACGAGCACCGACCGGGTCGCCCG GACGACGTCGGGAGCGGCCGCTGCGAGCCGGTCGGCCACGTCCATGTGCCACCCGTGCGG ACGGTCGGCGAACGTGCGTCCTTCCGCGGCGAGCACCTGGAACGGGGCGAACCGCACGTC GTCGAAGCCGGTGGCGGGGGTCGCGTAGCGCCGGTACGAGGCGACGTACGCCTCGGCGTC GTCCGACCGCCGCCGGGTCCGGTCGAGCAACGCGGACACGTCGACGCCGGCGTCGCGGGC GGACTCCAGCGCTGCGATCGCGCTCGGGAACGCCCCGGCCGCCGCAGCGCCGACCTCGGC GTACCAGTCACGGATCATGCACTCGGCCTTCACCGCCCACGGCAGCACCTCGCCGTCGAG CAGGACCCAGTCGCTGTCGAGCTCGGCCCACAGTCCGGCGCGCTCGAACGCGTCGGACAG CCGTCCGGTGAACGTGGCAGTGGTCGCGTCGTCGAAGAACGAGCGTCCGGTGCGTGTGTA CACGACGCCGTGCCAGCCGGACGGGGCGTCGAACCGTGCCGGGTCCCTGGCGAGGAGCAC CGTGGCCCGGGAGCCCATGTGCTTCTCCTCCATCCGGACCTGCGTCACGCCCTGCCCGCG GTAGTACGCGAACGCCTCAGCCGGGTGCTCCAGGTGGTCGGGGAGCGCGCTCGTCGCCAC CGGGCTCATCGTCGGCGGGAGGTACGGCAACCAGCGCGGGTCGATGGCGAAGCGACTCAT CACCTCGAGCGCACCGGCCGCGTTCTCGGCGCGGATCCCGATCCGGCCGTGGTGCCGGGT CTCGACGATCTGCTTGCCGGTCACGTCCTCGATGGGGAGGACGCCGGGGACGCGACGTGG TGACGGGCCGGCACCGCGCCTCCCGTCCGCCTGCTGGGTCGGACTGGAGGCGCGACCCGC CTCCGCCGCGTCGCCGTCCGTCGACGACGTGGCCGGGCCGCGCAGCGGCTCGAGCGGCTT GGCCGGCTCGTAGTGCACGCGCTCGGCGTCCACCTGCACGACCTCGCGTTCCGGGTACCG GAGTGCGGAGAGCTTCCCACCGAACACGCACCCGGTGTCGAGGCACATCGTGCCGTTGAT CCACTCGGTGTCGACGGTCGGCGTGTGCCCGTAGAGGACCATCGCCGACCCCCGGTAGGA GTCCGCCCACGGCAGCCGGACCGGCAGGCCGTACTCGTCGCTCTCCCCGGTGGTGTCGCC GTACAGCGCGAACGACCGCACCCGTCCGGACGCCCGGCCCTGGTACTGCTCCTTCATGCC GGCGTGCGCGACGACGAGCGCACCGTCGTCGAGCACCAGGTGCCCGACGAGCGAGCGGCA GAACTCCCGGACCTCGGTGCGGAACTCCTCGGACTCGGCGGCCAGTTGGGCGAGGGTCTC GGCGAGCCCGTGCGACGTCCGCACCTTGCGTCCGTCCAGGGCGCGGACGAGCTTGTCCTC GTGGTTGCCCGGGACGGCGAGCGCGTGCCCGTTCCGCACCATGCCCATCACGAGCCGGAG GACGCCGGGGGTGTCCGGGCCGCGGTCGACCAGGTCGCCGAGGAACAGCGCCCGACGACC GTCGGGGTGCACGGCGTCGACCGGCCGGCCGGCCTCGTCGCGGACCACGGTCCAGCCGAG CCGGCCGAGCAGCGACTCGAGTTCCGACCGGCAGCCGTGCACGTCGCCGACGACGTCGAA CGGGCCGTGCTCGTCCTTCCGGTCGTTGAGCAGGGGCTGCCGGACGATCGTCGCCGCCGC GATCTCGTCCTCACCACGGAGGACGTGCACACGACGGAAGCCCTCTTTGCCCAGGCCCTT CAACCCGCGTCGGAGCTGACCCTGCTGCCGACGGACCACCGCCGACCCGAAGTCTCGGCC GGACCGGGCGGCGTTCCGCGCGACGCACACCGACTCCGGGACGTCGAGCACGATCGCGAC CGGCAGGACGTCGTGGTCCCGGGCCAGCCGGACGAAGTCCCGACGTGCCTCTGGCTGGAC GTTCGTCGCGTCCACCACGGTGAGGAGTCCCTTCCGGAGCCGGAGTGCCGCGACGTGCTT CAGCGCGTCGAACGCCGCCGGCGTCGCGGCCTGGTCGTCCTCGTCGTTGGAGACGAGCCC GCGGAACACGTCGCTCGACAACGTCTCGTACGGACCGAAGTGCTTCGCGGCGAACGTCGA CTTGCCGGAGCCGCTCGTGCCGACGAGGAGCACGAGGGACATCTGCGGGATCGTCAGGGC GGTGTTGGTGGTGCGGTCGTTCAT
Region Details
| Region | 1 |
| Region Length | 8.8Kb |
| Completeness(score) | incomplete(40) |
| Specific Keyword | tail,protease |
| Region Position | 2108098-2116941 |
| # tRNA | 0 |
| # Total Proteins | 8 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 75% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Agroba_Atu_ph07_NC_042013(1) PHAGE_Cronob_vB_CsaM_GAP32_NC_019401(1) PHAGE_Bacill_0305phi8_36_NC_009760(1) PHAGE_Sinorh_phiN3_NC_028945(1) PHAGE_Yersin_fHe_Yen9_04_NC_042116(1) PHAGE_Strept_315.2_NC_004585(1) PHAGE_Pseudo_pf16_NC_041881(1) PHAGE_Pectob_CBB_NC_041878(1) PHAGE_Sinorh_phiM7_NC_041929(1) PHAGE_Sinorh_phiM12_NC_027204(1) PHAGE_Lactoc_TP901_1_NC_002747(1) PHAGE_Brocho_BL3_NC_015254(1) PHAGE_Serrat_BF_NC_041917(1) PHAGE_Erwini_vB_EamM_EarlPhillipIV_NC_031007(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 12.5% |
| GC % | 71.28% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Region DNA
>2 2694400-2703942 ATGGAGACCGTCCCGATCGCCCACCGGCGCGCTGCGGAGCAGGACGGTACCCGGTGGGAC ATCCAGGGCCTGCGGGCGTTCGCGGTCCTCGCCGTGGTCCTCTACCACCTCTGGCCGGCA CGGCTGCCGGGCGGGTTCGTCGGCGTCGACGTGTTCTTCGTGATCTCCGGCTACCTCATC ACCGGGCACCTCCTCCGAGAGCAGCTCGCGGACGGACGGATCGCACTCGGACGCTTCTGG GCCCGACGGGCGAAGCGGCTGCTGCCGGGCGCATTCGTGACGATCCTCGCGACCGGTGCC GCCGTGCTCGCGGTGGTGCCGAACGCGCTCTGGGGGCAGTACGGGCGTGAGCTCATCGCC TCGACCGTCTACCTGCAGAACTGGCAGCTGGCATCGGACGCTGTCGACTACCTGGCGTCC GACGCCGACCCGTCGCCGTTCCAGCACTTCTGGTCGCTGTCGGTCGAGGAGCAGTTCTAC ATCGCGCTGCCGCTCCTGCTCGTCCTGTGCGCCGTGGTGTTCCGGCGCCGCGGACGGTCG CCCGTGGTCACCGCTCGTTGGCTGCTCGGTGCGGTGTTCGTCCTGTCACTGGCGTGGTGC GTCGTGCAGACCCGGACCGTCCCGGGCGTCGCGTACTTCTCGACGGGGACCCGCGCGTGG GAGTTCGCGCTCGGCGGGCTCGCGGCGACGGTACCGGCCGCGCTGCTCACCGGCCGACGA GCGGTCCGGACGACCGGAGCCCTCCTCGGGACCGTCGCGCTGCTCGTGGCGCTCGTGGTC ATCACACCGGCGACGCCGTTCCCGGGCACCGCTGCGCTGCTGCCGGTCGGCGGTGCGACG CTCGTCGTGCTCTGCGGCGGAGGGACGGTGCTCGAGACGGTCGGGCGGATCCCACCGGTG GCGTTCACCGGGCGGATCTCGTACGCCGTCTACCTCTGGCACTGGCCGGCGATCGTCCTG CTGCCGATCGCCCTCGGGCACCCGCTCGGCGCGGGGTGGAAGCTGCTGGTACTCGGCGGA TCGATCGGTGTCGCCGCCGCGTCGACGGTGTTGCTCGAGGAGCCGCTCCGCTTCTCTGCT CGTGTGCGGGCAATGCGGCCCCGGCGGACGGCGCTGTACGGCGCGCTCAGCACCGTCGTC GTCGTCGCGCTCGGGGCCTCCACGTTGGTCGCGCTCGACGTGCAGCAACGGCAGGCGACC GAGTTCGCCCAGGCACTGCAACGCGGCGACGCTCCGTGCTTCGGTGCCGCTGCGCGCATC GGGTTCGACGACCCCTGCACGAACCCCCGGCTCGACGACGTCCGGGTGCCGGCCGCGTCG ATCGCCGCGAAGGACGACCACAACAGCGCGGACTGCTGGTCGGGGTTCGAAGCGACGCTG AAGACCTGCACCGTCGGGGCCACCACGGGCGCGACGAAGCACCTGTTCGCGGTGGGGGAC TCGCACAGCAACGCGTGGCTGGCCGTGTACGACGAGATCGGGAAGCGGAACGGGTGGCGC ATCGAGGTCGCCGGGCACGGTGGGTGCTACCTGACGACCGCGCGACAGGACGCCCCGCAG CAGTTCCAGGTCGACAACTGCGAGACGTGGAAGCGCGCGGTCGAGCAGAAGATCGCGACG GAGGACCTCGACGGCGTGATCGTGACGCACGCCGCGACCGTGTACCCGGTCGTCGCGCAG GACGGCAGGTCCGCGGCGGAAGCGACGATCGCGGGACAGGTCGAGGCGTGGCGGACCGCC ACTGACCGCGGCATCCCGGTGGTCGCGATCCGTGACAACCCGCGACCGAGGCAGGACGTC GTGGCCTGCGTCGGGGCGATGCCCGCCGGTCCGACGACGTCGGCGTGCGACACTCCTCGG TCGGCGGCGTTCCCCGCCTCGGACGGACAGCGGGAGGCAGCGGCGCGGGTCGGACCACTC GCACACGTGGTCGACCTGACGCGGTACTACTGCGACGCGACGACGTGCCCGGCGGTGATC GGCGGGGTGCTCGTCTACCGGGACGGGAGCCACCAGACGCTCACCTTCGCGAAGACGCTG CGACCGTACCTGGAGCAGGGGCTGCTCACCGCACTGGGCGGCGCCTAGCCTGGGGGCATG CACACCGAGGTGCCCCGCCCCCACATCGACGCCGCGCTCGTGGAGCGGCTCGTCGCCGAC CAGTTCCCCGAGTGGGCCGGGTTGCCCGTGCACGAGGTCGATCCGCAGGGCTGGGACAAC CGCACCTACCGGTTGGGCAGCGAGCTGTCCGTGCGGCTGCCGAGTGCGGCCGGGTACGTC GCGGCGGTCGAGAAGGAGCAGCGGGTGCTGCCGTACCTCGCGCGCCGGCTGGACGTGCCC GTGCCCGAACCGGTCGGCCTCGGCACCCCGACCGACGGGTACCCGTTCCCGTGGTCGGTC CGGCGCTGGATCGACGGGACGGTCGCGCTCCGTGCACCGCGGCTCGACCGCGCGCGGTTC GCCGCTGACGTCGGCACGGTGCTGCGGCAGCTGCGAGCGATCCGGGCCGCGGACGGCCCG GTCGCGGGAGCGCACTCCTTCCACCGGGGCGCGCACCCGTCGCAGTACGCGTCCGAGGTG GTCGCCGCGCTCGACACCCTCGGTGCTGCGGTCGACCGGCGGGCGTGCGAGCGGGTCTGG GACGAGGCCGTCGCGTCGGCGTGGGACGGACCCGGGGTCTGGTTCCACGGGGACGTCGCG CCGGGGAACCTCCTGGTGGACGGGGACGGCAGGCTCAGCGCCCTCATCGACTTCGGGACG TGCGGCGTCGGTGACCCGGCGTGCGACCTCGTGCTCGCGTGGACGTTCCTCGACGCGGAC GCCCGCCGGGTGTTCCGGGACGTCGTCGCGCTCGACGCGGCCACCTGGGCACGAGGACGC GGGTGGGCACTGTGGAAGTCGCTCATCATGCTCGCCGGCAGTGCGGGTCCGGGCGACCGC GTCGAGCACCAGCGGGTGCTCGACGCGGTCCTCGCGGACCCCGTGGTCTGAGCCTGGAGG CACGGCTCGCGTCCGCCGCGGAACGCGCGCAGCGGACGGGGCTGGGAACGCACCACGGGA CGGGCGGGTACCGACTGGGGGAGACGAGCCGCGCCGCCAGGCCGGCCCGAAGCGACCACG AGAGGAACGCGACGTGCGCGCACTGACCTGGCAGGGCACCGAGAAGGTGTCCGTCGAGAC CGTCCCCGACCCGACCATCCAGGAACCGACCGACGCGATCGTGCGGATCACGTCGACCGC GATCTGCGGCTCCGACCTGCACCTGTACCGCGTGCTCGGCGCCTACATCGACAAGGGCGA CGTCCTCGGCCACGAGCCGATGGGCATCGTCGAGGCGGTCGGCAGCGAGGTGACCAACCT CAAGGTCGGCGACCGCGTCGTCGTCCCGTTCAACATCTCCTGCGGGCACTGCTGGATGTG CCGCAACGGTCTGCAGTCCCAGTGCGAGACCACCCAGACCGCCGACTACGGCACCGGTGC CTCGCTGTTCGGCTACACGAAGATGTACGGCCAGGTCCCCGGCGGACAGGCCGAGTACCT CCGGGTGCCGCACGCCGACTACGGACCGATCGTGGTGCCCTCCGACGGCAGCCCCGACGA CCGGTGGCTGTTCCTCAGCGACATCCTGCCGACCGCCTGGCAGGCCGTGCAGTACGCCGA CGTCCCCGAGGGCGGCACGCTCGCGGTGCTCGGCCTCGGCCCGGTCGGGCAGTTCGCCGC ACGCATCGGCGCGCACCTCGGGTACCGGGTGCTCGCCGTCGACCCGGAGCAGGTCCGTCG CGACCTCGCGTCGAAGCACGGCGCCGAGGTCTTCGACCTGACGAAGGACGTCGTGCCGCA GCTGATCGACCTCACCGACGGTCGGGGCCCGGACGGCGTGGTCGACGCGGTCGGCATGGA GGCCCACGGCAACCCGTTCGCCAGCTTCGCGCAGCGTGCCGCCGGGCTGCTCCCCGACGC CATCGCGCAGAAGGCGATCGAGACCGCCGGCGTCGACCGGCTCGCAGCCGTGCACGCGGC GATCGACCTCGTCCGCCGCGGTGGCACCGTCTCGCTGAGCGGTGTGTACGGCGGACGGGC CGACCCGATGCCGATGTTCACCCTGTTCGACAAGCAGATCACCGTGCGCGAGGGGCAGTG CAACGTCCGCCGCTGGATCGACGACCTGATGCCGCTCGTGTCCGACACCTCGGACCCGCT CGGGACGCTCGACCTCACGACGCACCGGGTCTCGCTCGAGGACGCCCCGCACATGTACGA GGTGTTCCAGAAGAAGGAGGACGGCTGCGTGAAGGTCGTGCTCGATCCGTCCCTGGCCGC CGCCTGATGCGGATCGTCGTCGTCGGCGCGACCGGCAACGTCGGGACGGCGGTGGTGAGA CGGCTCGCGGCTGCGCGTGCTGACGACGGCTCCTCGTCGGAGGTCGTCGGGGTCGCACGC CGACTGCCGGACCTCCGTGCCGATCCGTACGGGTCCGCGGTGTGGCACGCGGTCGACGTC GGCGCGCACGACGCCGTCGACCAACTCACCGCGGTGTTCCAGGGCTCCGACGCCGTGGTC CACCTGGCGTGGGCGTTGCAACCGACGCACGACATCCCCACGCAGTACCGGACGAACGTC ACCGGGACGGCGAACGTGCTCGAGGCCGTCGCCCGCGCCGGCGTCCCGCAGGTCGTCGTC GCCTCGTCGGTCGGCACGTACCGCGGGGTCGACGTCGACGGCAAGCGCACCCCGGTCGAC GAGAGCTGGCCGGCGACCGGGATCCCGACCGCCACCTACTCGATCCACAAGGCCGCGAAC GAGGCGGCGATGGACCGCTTCGAAGCGCAGCACCCGGACACCGTGGTGACGCGGCTGCGG CCCGGGCTGATCTTCCAGCGGGACGCCGCCGCAGAGATCCGTGGGCTCTTCCTCGGCCAT CTCGTGCCGATGTCGATCGTCCGCTGGATCCGGTGGGCGGTCCTGCCGCTGCCGTTGCCG TTCGTGTTCCAGGCCGTGGACGCCGACGACGTCGCCGATGCGTACTGGCGGGCGATCGAC CGGCGAGCCGGGGGAGCGTTCAACATCGCTGCCTCGCCCGTGCTCAACCCGCCTCGGCTC GCCCGGGCGTTCGGGATGCTCGGGGCGATCCGGGCGCCGATGTGGCTCATCCGGGGCATC GTCACGCTGACCTGGCGGCTGCGCTTGCAGCCGACGGACGCCGGGTGGGTGGACATCGCG GCGCAGGTGCCGGTGATGCGGACGGACAAGGCGCGGTCGGTGCTCGGATGGGAGGCGCGG CACACCTCCGAAGACGCGTTGCGCGAGCTCGTGGCCGGGTTCGCGGACGGGGCGCGGGTG CCGGGGTCGGGGCCGCTGCGAGGCTGAGCGGGGTCGGCACCGAGGTCGCTTCGCGGGTCG TCCGCGGGGATGTCGCTACGATCGCGGTACCGAACGAGCACGAGGGGGCAACCATGGCGT TCGAGGAGACCGACAACCCGCTGGTCCCGGCCGGCTACGACCTCGTCGGGTCACTGATCA TGGTCGGCGGCGTGATCGTCGTCCTCGGGATGATCGCAGTGATCGTCCTCGCGGTGTACC GGTCGACCCGCATGGCGAACCGCGGCCAGAACCCGCTGACCCTGACCGAGGACCTCGCCT TCCAGGCCACACAGAGCGCCACACTGGCACCGGTCAAGTCGATCGAGCAGCGGCTCGCCG AGCTCGACGACCTGCACGCCCGCGGTGTCATCTCCGACGAGGAGCACCGCAGCGCCCGCG CCGAGGCCCTCCGCGGCTAGCCTGGGCGGGTGCTGCTGCCGACGGACCTGCTCGGGGACT GGGTGCTCCGTCGCCGCGTGGACGATCGGCGCGCCGGCGTCGACGGCACCGTGACCGGCA CGACCACCCTGACGAGCACCGGCCCGGATGAGGTCCGCTGGGACGAGTCCGGCACGATGA CCTTCGACGGCCGGACCGTGCCCGTCTCGAGGACCCTGCACGTGCGACGAGCCGACGACG ACCGGTGGACGGTGTTCTTCGCCGACGGCAGGCCCTTCCACGACTGGATCTGGGACGAGC GCGTCGACCACGCGTGCGCGCCGGACGACTACACGGGGGTCCTCGCCGGGGACGCCGACC GCTGGACCGTCCGGTGGGAGGCACACGGCCCCGCGAAGGACTACGTACTCGACAGCGAGC TCCGACGTCGGTCCCACCCGGCAGACTGAGCCCATGCCCCGCAGCTCCGGTACCGACGCC CCACGGATCACCCTGACCGAACCCGCCGACCTCGACGACTGGACCCCCGGACCCGGTGAC GTCCTGACCGGCGACCGCATCGAGGGGAAGCGCATCGAGACCCTCGACCTCGCCGGGGAG CGCCTGCCCGACGTCGAGATCGAGGAGTCGGTGATCGGCACGCTTCGGGTCGACGGCGCC GACCTCCGTGGGCTCCGGGTGCGGGACTCGGTCGTGGAGGTCCTCGACGCCCCGGTGCTC CGGGCATCGAGCAGCGCCTGGCGCGAGGTCCGGATCGCCGGCGGCCGCGTGGGTTCGGCC GAGCTGTACGACGCCGGGTTGAACGGCGTCGAGTTCGTCGGGATGAAGCTCGGCTTCGTG AACCTGCGCGGCTCGACGCTCACCGACGTCGTGTTCCGCGACTGCGTCATCGACGAGCTC GACATCGCCGATGCCCGACTGCTCCGGGTGTCGTTCGACGGCACGCGGATCCGGGCGGCC GAGGGGTCGAACACCCGGATCGACCACGTGGACCTCCGGGGTGCCGACCTCGACCGGGTC GAGCGGCTCGAGGGATTCCGCGGTGCCACGATCGCCGCCGACCAGCTGTACACACTCGCG CCGCTGCTGGCTGCCCAGGCGGGCTACCGCGTCGACTGACCGCCCCGAGCCTCGGGTCGC CCGGTGCCCACGCCGGCCAGCGCTGCCGCCAGGTCGGCCTGCACCAGGTCACCGTGCACG GCAGCGCCCGCCTGCGTCCCCGCAGCGGCGGACGCGATGACGGTCGCCATCGGGGATGCC ACGTTCCCCGCCGCGTACACGCCCCGGACCGAGGTCTGCCCGGCCGGGTCCACCGCCAGG GCGCTGCCGAACCGGAAGTCGCCCATGACCTGGTCGACCGCCTCGAGTCCCAACCCGGAC AGGAACCCGACCCGGGCCTCGACGGTGCTGGCGGCGGCGAGGGCGTCGAGCGGGACGACG TCGCCCGAGCCGAGTTGCACGCCGCTGAGGACACCGCCCGAGGACAGCACCTCCGAGACC TGGCCCGTCACGACCCTGATCCCACGTGCCCGCAAACCCGCCAGGGCAGTGTCGTCGACG AGTGCCGGATCGGTGACGAACGCCGTCACGTCCTCGCTCAGCGCCCGGAACATGAGCGCG TGGTGCGCCCCGTTCGGTGTCGTCACCAGGACGCCGATGCGCTGGTCGCGGATCTCCCAC CCGTGGCAGAACGGGCAGTGCACGACGCCGCGCCCCCACTGCTCGGCGAGCCCCGGGACC TCCGGCAGGACGTCGACGGCGCCGGAGGCGACGACCAGCCTGCGCGCCGTGACGACCGCG CCGGACTCCAGGGTGACCGAGAAGCCGACCGGATCGATCCCGTCACCGTCGGTGCCGGAC GCGGCCACGATCCTCCCGGCCGTCACCTCGACGCCGTAGGCGGCGACCTCGTCGCGCCCG ATCCCGTACAGCTCCGACGGCGAAGCGCCCTCGCGTCCGAGGTAGTTGTGCGCGCCCTCC GCGGGCGCGTTGCGGGGTTCGCCCGCGTCGACGACGAGGACGGAGCGCCGGGAGCGACCG AGGATGAGTGCGGCTGACAGGCCGGCGGCAGCTCCGCCGATGACGATGACGTCGTAGTGA TCACGCATGCGTGCATCCTGCGAGATGTCGTGCACTCCTGGCAACGATGCTTGCTGATCT GGCAACATGGTCGCAATGACGCACGGCCGGGAGGAACGGATCACCCCACGCACGACCGCT GAGGTGGTCGACGGGGTCGGCGCCCGTCTCCGCGCCCTGCGTGCGCACCGCGACGTCACG CTCGCCGCCCTCGCGGCGGAGACCGGGATCTCGGTCTCGACGCTGTCGCGGCTGGAGTCG GGGCAGCGGAAGCCGACGCTCGAACTCCTCCTGCCGCTCGCCCGCGCGTACCAGGTGCCG CTCGACGACCTCGTCGGAGCGCCACAGACCGGGGATCCGCGCGTGCACCTCAAGCCGGAG CTGCACGGTGGACGTGTGGTCGTGCCGCTCACCCGGCGGACCGGGGGCGTGCGGTCGTTC AAGCAGCTGTTCCCGCCGAACTCGCCCGGTGGTGAACCGTCGCTCAAGACGCACGAGGGC TACGAGTGGCTCTACGTGCTCTCCGGCCGGCTGCGGCTCGTCCTCGGGGAGCACGACCTG GACCTCGGGCCGGGCGAGGTCGCCGAGTTCGACACGCACACCCCGCACTGGATCGGCAAC GTGACCGACGAGGTGACCGAGGTGCTGTGCCTGTACGGGCCGCAGGGGGAGCGGGCGCAC GTGCGGGCGCGGCCGACGCGCGGCTCGTAGCGGGGGTCAGCCGCGCCAGACAACCCGGGG TGCCAGGAGCCGGTGCCCGGTCGACGCCGGCAGCACGGACCGCCCCGTGCCCATCAGCAG CTCGACCGCGGCCGAGGCGACCTCGACGAGGGGCTGCTCCACGCTCGAGATGCCGAGCGC CTCGGCGACCGGGGTGTCGTCGTACCCGACCACGGGCACCCCGGCGCCGAGCGCGAACCG GGCGCCGAGCGCGAGGGTGTCGGAGGCGCACACCAGTGCGTCGAACCCGGCCCCGTCGTC GATCGCCGCCGCGACCGTGCTGGTGGCGGCCGTGACGTCGTCCTCGCACGTCAGACCGTC GGCGTCCGGGAGCCCGGCTGCGCGCAGCGCGTCCTGCCAGCCGCGGCGCCGTTCGTCGCC CTGGCCGGACGGACTCGGCCATCCCAGGAACCCGACCCGCCGGTGGCCCTGCGCCACCAG GTGGTCCGTGGCCTCGCGCAGCCCGGAGCGTCCGTCGACGTCGACCCACGGGTGCGGGGC GGCGTCCATGTCCGGCAGGCCCCACGGCCGACCGAAGGTGACGAAGGGGATGTCCCGGTC GCCGAGCCAAGCCGCGCGGGGGTCGCCGTGGAACGTCGAGGTGAGCACGAACCCGTCGAC GTCCGACCCCTCGACGAGCCGCTCCATGTGGGTGAGCTCGTCGTCGACGTCGGTGGCGGT GAAGAGCAGGATCCGCATCCCGCGCTCGTCGGCGCTCTCGACGAGGGCGTGCAGGAACCG GTCGAGGACGGCGCCGGAGATGCCGTGCACGGGTTCGAGCCGGACGCCGAGGGTCGAGCT CTGCCGGGTGCGGAGACGCCTGGCGGAGGCGTGCGGGCGGTACCCGAGGCCCTGGATGGC GGCCTGCACCCGGGACAGTGTCTCGGGGCGGACGACCTCGGGCCGGTTCAGCACGTTCGA CACGGTCTGCCGGGAGACACCCGCCGCGAGGGCGACGTCGGCGACGGTGGCGGGGTGCGT CAT
Region Details
| Region | 2 |
| Region Length | 9.5Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 2694400-2703942 |
| # tRNA | 0 |
| # Total Proteins | 10 |
| # Phage Hit Proteins | 7 |
| # Hypothetical Proteins | 1 |
| Phage + Hypothetical Protein % | 80% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 7 |
| Most Common Phage Name(hit genes count) | PHAGE_Entero_DE3_NC_042057(1) PHAGE_Pseudo_PAJU2_NC_011373(1) PHAGE_Salmon_g341c_NC_013059(1) PHAGE_Clostr_phiCT19406B_NC_030947(1) PHAGE_Paenib_phiIBB_Pl23_NC_021865(1) PHAGE_Clostr_phiCTC2B_NC_030951(1) PHAGE_Thermo_THSA_485A_NC_018264(1) PHAGE_Microc_MaMV_DC_NC_029002(1) PHAGE_Gordon_BritBrat_NC_030942(1) PHAGE_Synech_S_SM2_NC_015279(1) PHAGE_Bacill_G_NC_023719(1) PHAGE_Burkho_KS5_NC_015265(1) PHAGE_Salmon_BTP1_NC_042346(1) PHAGE_Synech_ACG_2014f_NC_026927(1) |
| First Most Common Phage # | 1 |
| First Most Common Phage % | 10% |
| GC % | 72.81% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NZ_CP018783.1| Curtobacterium pusillum strain AA3 chromosome, complete genome. 3973750, gc%: 70.87%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 8 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(2108098..2108394) | PHAGE_Serrat_BF_NC_041917: L-shaped tail fiber protein; BUE88_RS09855; phage(gi100266) | 2.14e-08 | Showinfo_outline |
| 2 | 2108558..2109760 | SAM-dependent methyltransferase; BUE88_RS09860 | 0.0 | Showinfo_outline |
| 3 | complement(2109910..2110623) | DUF4190 domain-containing protein; BUE88_RS09865 | 0.0 | Showinfo_outline |
| 4 | complement(2110734..2111789) | PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; BUE88_RS09870; phage(gi16130960) | 6.77e-83 | Showinfo_outline |
| 5 | complement(2111776..2112276) | PHAGE_Erwini_vB_EamM_EarlPhillipIV_NC_031007: hypothetical protein; BUE88_RS09875; phage(gi100097) | 1.18e-05 | Showinfo_outline |
| 6 | complement(2112333..2112968) | PROPHAGE_Escher_MG1655: protease specific for Gcp(YgjD), essential for nucleoid maintanence; BUE88_RS09880; phage(gi16129761) | 5.32e-13 | Showinfo_outline |
| 7 | complement(2112989..2114155) | PHAGE_Lactoc_TP901_1_NC_002747: ORF56; BUE88_RS09885; phage(gi13786587) | 9.11e-08 | Showinfo_outline |
| 8 | complement(2114296..2116941) | PHAGE_Agroba_Atu_ph07_NC_042013: hypothetical protein; BUE88_RS09890; phage(gi100253) | 4.24e-31 | Showinfo_outline |
Sequence
>complement(2108098..2108394)
CurtobacteriumpusillumMAVSIKPLEDRIVIRQVEAEQTTASGLVIPDTAKEKPQEGEVVAVGPGRIDDNGNRVPLDVAVGDKVIYSKYGGTEVKYSGEDLLVLSARDVLAVIEH
Sequence
>2108558..2109760
CurtobacteriumpusillumMEAADLAQLLTPEGMALLDRTPAVSDGGEIVRVVSRLRSEGHDPGLVAAVLTQARLRQKARGKFGDFAARMLFTEAGLEQATRLQVAAQHAGRFAAAGLTRVADLGCGIGGDAMAMAALDLEVTAVDRDEVTAAVATHNLALWPSARVELGDAAEFDLSRVDGVWMDPARRTSGHTNTKRLADPDDWSPSLDTVFASATTTPTGVKLGPGVDRDLIPDTAEAQWTSVDREVVELALWFGPLARPGIRRAATVIGSHGIAELTGAADALDEEVGPLGAYLYEPDGAVIRARLIGDLARSLGGHMLSDGIAYVTSDQAVTTPFAQGFRVVDTLPLDVKQLAARLAADDIGTVEIKKRGVDVDPAQFRKRLRLRGRGRVTLVLTRLEGRHTAILCERLTDGAG
Sequence
>complement(2109910..2110623)
CurtobacteriumpusillumMSDQNQWPKPGESTPDGGASANQPAPEPGAPSSAAQPEFGQPQQYGASAPEGSSEAPQNPYAAPSNPYAAPGQSGPQGQPGYGAPQNPYAAPQNPYAPPSNPYAAPQQPNANPYGAQQGSNPYAAPAYAPGGYQPYAQRPKTNVLAILSIVFAFGGIIIWPLIILTSPAGAIMGHIALGKIKQSGEGGRGLALAGVIGGWVLTGLFILIVGLFIIIGVAAGNSSNYDYGYDSGAFIG
Sequence
>complement(2110734..2111789)
CurtobacteriumpusillumMTAAEPLVLGIETSCDETGVGIVRGTTLLANVIASSMDEHARYGGVVPEVAARAHLEAMTPTLSAALEQAGVTLDELDAVAVTAGPGLAGALMVGVGAAKALAVATGKPLYGVNHLVGHVGADVLRTDGSEIELPTVALLVSGGHTSLLLVRDLVGDVELLGETIDDAAGEAFDKVARLLGLPYPGGPQIDKAAADGDPTAIRFPRGLTLPKDMAAHRYDFSFSGLKTAVARWVERCRDEGREVPVADVAASFREAVVDVLLTKALNACRDTGVDRLLLGGGVVANARLRAVAEERCAAAGVALRIPPFDLCTDNGAMIAAVGARLVAEGHAPSDLGIAADSTLPVTTVQV
Sequence
>complement(2111776..2112276)
CurtobacteriumpusillumMWLEHTSFPTDAWSASQMSGELYSPHGYYVVVETTEDGAPTIVGYAGLSSLAGNPVADVQTIAVAAEQRGKGIGRVLFTELLAEARRRGVHEVFLEVRADNPVAQAMYTAFGFERIAVRPRYYQPDGVDAWVMRAALEPAAQAPTSAPSPSSTVGPIGQEALDDRS
Sequence
>complement(2112333..2112968)
CurtobacteriumpusillumMLLAIDTSAGTSVAVVDPATGQARATCSTEDSRRHAEVIGPFLVEVLDEAGITGADVTGVVAGMGPGPFTGLRVGIAAARTFAAARGVPFLPLVSHDAVAADQRASGRDGAFVVLTDARRREVYWSAYDETGTRVAGPGLAKPDDLDEAIRASRPDAVDWDRVTVASIPAWRLGALAADRLTSGTPFAQDTPLYLRDPDVTVPGAPKRVKQ
Sequence
>complement(2112989..2114155)
CurtobacteriumpusillumMRTSDFTSERFGVVARQAVGAWTHPYFLPAIMPRRLDLQMETVTAVSRATLELGNLGGLGQLVREPELLLGPSMAQEALASSRIEGTQASLSDVLSAETSDQPIIDHNLREVSSYLAAADVGVRLLQTLPLTQRFITELHAVLMRDVRGEEKSPGELRRSPVWIGSPDARPDTAKFIPPHQQHLPELLSDWERFVNDDGSALPIVVKSALMHYQFETIHPFLDGNGRIGRLLINFSLMADQVLPAPILHISGYFEAHRTEYYARLQGVRERGEIDEWIQFFSAGVAQRARESAERIRSLVEIRERYRDEVRGDRSALSGLVDVVFRNPVVTSDAVQRALGVSQPTASNLLRRAVERGWLEPRPRFGRGGRGRWVAVEVWDAVRSPLDE
Sequence
>complement(2114296..2116941)
CurtobacteriumpusillumMNDRTTNTALTIPQMSLVLLVGTSGSGKSTFAAKHFGPYETLSSDVFRGLVSNDEDDQAATPAAFDALKHVAALRLRKGLLTVVDATNVQPEARRDFVRLARDHDVLPVAIVLDVPESVCVARNAARSGRDFGSAVVRRQQGQLRRGLKGLGKEGFRRVHVLRGEDEIAAATIVRQPLLNDRKDEHGPFDVVGDVHGCRSELESLLGRLGWTVVRDEAGRPVDAVHPDGRRALFLGDLVDRGPDTPGVLRLVMGMVRNGHALAVPGNHEDKLVRALDGRKVRTSHGLAETLAQLAAESEEFRTEVREFCRSLVGHLVLDDGALVVAHAGMKEQYQGRASGRVRSFALYGDTTGESDEYGLPVRLPWADSYRGSAMVLYGHTPTVDTEWINGTMCLDTGCVFGGKLSALRYPEREVVQVDAERVHYEPAKPLEPLRGPATSSTDGDAAEAGRASSPTQQADGRRGAGPSPRRVPGVLPIEDVTGKQIVETRHHGRIGIRAENAAGALEVMSRFAIDPRWLPYLPPTMSPVATSALPDHLEHPAEAFAYYRGQGVTQVRMEEKHMGSRATVLLARDPARFDAPSGWHGVVYTRTGRSFFDDATTATFTGRLSDAFERAGLWAELDSDWVLLDGEVLPWAVKAECMIRDWYAEVGAAAAGAFPSAIAALESARDAGVDVSALLDRTRRRSDDAEAYVASYRRYATPATGFDDVRFAPFQVLAAEGRTFADRPHGWHMDVADRLAAAAPDVVRATRSVLVDVDDEASRAAGADWWQDLTGAGGEGAVVKPEGNLTRGPKGLVQPGVKVRGREYLRIIYGPEYTEPANLARLRDRDLGHKRSMALREYALGLESLERFVAGEPLWRVHQPVFGVLAMESEPVDPRL
Region 2, total 10 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 2694400..2696487 | PHAGE_Gordon_BritBrat_NC_030942: hypothetical protein; BUE88_RS12890; phage(gi100030) | 3.80e-95 | Showinfo_outline |
| 2 | 2696497..2697390 | aminoglycoside phosphotransferase family protein; BUE88_RS12895 | 0.0 | Showinfo_outline |
| 3 | 2697533..2698726 | PHAGE_Synech_S_SM2_NC_015279: zinc-containing alcohol dehydrogenase superfamily protein; BUE88_RS12900; phage(gi326781942) | 5.10e-08 | Showinfo_outline |
| 4 | 2698726..2699766 | PHAGE_Synech_ACG_2014f_NC_026927: hypothetical protein; BUE88_RS12905; phage(gi100233) | 2.86e-05 | Showinfo_outline |
| 5 | 2699853..2700179 | SHOCT domain-containing protein; BUE88_RS12910 | 0.0 | Showinfo_outline |
| 6 | 2700189..2700608 | hypothetical protein; BUE88_RS12915 | 0.0 | Showinfo_outline |
| 7 | 2700613..2701278 | PHAGE_Microc_MaMV_DC_NC_029002: pentapeptide repeats family protein; BUE88_RS12920; phage(gi971764755) | 2.11e-10 | Showinfo_outline |
| 8 | complement(2701263..2702267) | PHAGE_Bacill_G_NC_023719: gp344; BUE88_RS12925; phage(gi593777800) | 8.45e-05 | Showinfo_outline |
| 9 | 2702335..2702949 | PHAGE_Burkho_KS5_NC_015265: gp45; BUE88_RS12930; phage(gi327198043) | 3.57e-08 | Showinfo_outline |
| 10 | complement(2702956..2703942) | PHAGE_Entero_DE3_NC_042057: hypothetical protein; BUE88_RS12935; phage(gi100002) | 3.05e-15 | Showinfo_outline |
Sequence
>2694400..2696487
CurtobacteriumpusillumMETVPIAHRRAAEQDGTRWDIQGLRAFAVLAVVLYHLWPARLPGGFVGVDVFFVISGYLITGHLLREQLADGRIALGRFWARRAKRLLPGAFVTILATGAAVLAVVPNALWGQYGRELIASTVYLQNWQLASDAVDYLASDADPSPFQHFWSLSVEEQFYIALPLLLVLCAVVFRRRGRSPVVTARWLLGAVFVLSLAWCVVQTRTVPGVAYFSTGTRAWEFALGGLAATVPAALLTGRRAVRTTGALLGTVALLVALVVITPATPFPGTAALLPVGGATLVVLCGGGTVLETVGRIPPVAFTGRISYAVYLWHWPAIVLLPIALGHPLGAGWKLLVLGGSIGVAAASTVLLEEPLRFSARVRAMRPRRTALYGALSTVVVVALGASTLVALDVQQRQATEFAQALQRGDAPCFGAAARIGFDDPCTNPRLDDVRVPAASIAAKDDHNSADCWSGFEATLKTCTVGATTGATKHLFAVGDSHSNAWLAVYDEIGKRNGWRIEVAGHGGCYLTTARQDAPQQFQVDNCETWKRAVEQKIATEDLDGVIVTHAATVYPVVAQDGRSAAEATIAGQVEAWRTATDRGIPVVAIRDNPRPRQDVVACVGAMPAGPTTSACDTPRSAAFPASDGQREAAARVGPLAHVVDLTRYYCDATTCPAVIGGVLVYRDGSHQTLTFAKTLRPYLEQGLLTALGGA
Sequence
>2696497..2697390
CurtobacteriumpusillumMHTEVPRPHIDAALVERLVADQFPEWAGLPVHEVDPQGWDNRTYRLGSELSVRLPSAAGYVAAVEKEQRVLPYLARRLDVPVPEPVGLGTPTDGYPFPWSVRRWIDGTVALRAPRLDRARFAADVGTVLRQLRAIRAADGPVAGAHSFHRGAHPSQYASEVVAALDTLGAAVDRRACERVWDEAVASAWDGPGVWFHGDVAPGNLLVDGDGRLSALIDFGTCGVGDPACDLVLAWTFLDADARRVFRDVVALDAATWARGRGWALWKSLIMLAGSAGPGDRVEHQRVLDAVLADPVV
Sequence
>2697533..2698726
CurtobacteriumpusillumMRALTWQGTEKVSVETVPDPTIQEPTDAIVRITSTAICGSDLHLYRVLGAYIDKGDVLGHEPMGIVEAVGSEVTNLKVGDRVVVPFNISCGHCWMCRNGLQSQCETTQTADYGTGASLFGYTKMYGQVPGGQAEYLRVPHADYGPIVVPSDGSPDDRWLFLSDILPTAWQAVQYADVPEGGTLAVLGLGPVGQFAARIGAHLGYRVLAVDPEQVRRDLASKHGAEVFDLTKDVVPQLIDLTDGRGPDGVVDAVGMEAHGNPFASFAQRAAGLLPDAIAQKAIETAGVDRLAAVHAAIDLVRRGGTVSLSGVYGGRADPMPMFTLFDKQITVREGQCNVRRWIDDLMPLVSDTSDPLGTLDLTTHRVSLEDAPHMYEVFQKKEDGCVKVVLDPSLAAA
Sequence
>2698726..2699766
CurtobacteriumpusillumMRIVVVGATGNVGTAVVRRLAAARADDGSSSEVVGVARRLPDLRADPYGSAVWHAVDVGAHDAVDQLTAVFQGSDAVVHLAWALQPTHDIPTQYRTNVTGTANVLEAVARAGVPQVVVASSVGTYRGVDVDGKRTPVDESWPATGIPTATYSIHKAANEAAMDRFEAQHPDTVVTRLRPGLIFQRDAAAEIRGLFLGHLVPMSIVRWIRWAVLPLPLPFVFQAVDADDVADAYWRAIDRRAGGAFNIAASPVLNPPRLARAFGMLGAIRAPMWLIRGIVTLTWRLRLQPTDAGWVDIAAQVPVMRTDKARSVLGWEARHTSEDALRELVAGFADGARVPGSGPLRG
Sequence
>2699853..2700179
CurtobacteriumpusillumMAFEETDNPLVPAGYDLVGSLIMVGGVIVVLGMIAVIVLAVYRSTRMANRGQNPLTLTEDLAFQATQSATLAPVKSIEQRLAELDDLHARGVISDEEHRSARAEALRG
Sequence
>2700189..2700608
CurtobacteriumpusillumMLLPTDLLGDWVLRRRVDDRRAGVDGTVTGTTTLTSTGPDEVRWDESGTMTFDGRTVPVSRTLHVRRADDDRWTVFFADGRPFHDWIWDERVDHACAPDDYTGVLAGDADRWTVRWEAHGPAKDYVLDSELRRRSHPAD
Sequence
>2700613..2701278
CurtobacteriumpusillumMPRSSGTDAPRITLTEPADLDDWTPGPGDVLTGDRIEGKRIETLDLAGERLPDVEIEESVIGTLRVDGADLRGLRVRDSVVEVLDAPVLRASSSAWREVRIAGGRVGSAELYDAGLNGVEFVGMKLGFVNLRGSTLTDVVFRDCVIDELDIADARLLRVSFDGTRIRAAEGSNTRIDHVDLRGADLDRVERLEGFRGATIAADQLYTLAPLLAAQAGYRVD
Sequence
>complement(2701263..2702267)
CurtobacteriumpusillumMRDHYDVIVIGGAAAGLSAALILGRSRRSVLVVDAGEPRNAPAEGAHNYLGREGASPSELYGIGRDEVAAYGVEVTAGRIVAASGTDGDGIDPVGFSVTLESGAVVTARRLVVASGAVDVLPEVPGLAEQWGRGVVHCPFCHGWEIRDQRIGVLVTTPNGAHHALMFRALSEDVTAFVTDPALVDDTALAGLRARGIRVVTGQVSEVLSSGGVLSGVQLGSGDVVPLDALAAASTVEARVGFLSGLGLEAVDQVMGDFRFGSALAVDPAGQTSVRGVYAAGNVASPMATVIASAAAGTQAGAAVHGDLVQADLAAALAGVGTGRPEARGGQSTR
Sequence
>2702335..2702949
CurtobacteriumpusillumMTHGREERITPRTTAEVVDGVGARLRALRAHRDVTLAALAAETGISVSTLSRLESGQRKPTLELLLPLARAYQVPLDDLVGAPQTGDPRVHLKPELHGGRVVVPLTRRTGGVRSFKQLFPPNSPGGEPSLKTHEGYEWLYVLSGRLRLVLGEHDLDLGPGEVAEFDTHTPHWIGNVTDEVTEVLCLYGPQGERAHVRARPTRGS
Sequence
>complement(2702956..2703942)
CurtobacteriumpusillumMTHPATVADVALAAGVSRQTVSNVLNRPEVVRPETLSRVQAAIQGLGYRPHASARRLRTRQSSTLGVRLEPVHGISGAVLDRFLHALVESADERGMRILLFTATDVDDELTHMERLVEGSDVDGFVLTSTFHGDPRAAWLGDRDIPFVTFGRPWGLPDMDAAPHPWVDVDGRSGLREATDHLVAQGHRRVGFLGWPSPSGQGDERRRGWQDALRAAGLPDADGLTCEDDVTAATSTVAAAIDDGAGFDALVCASDTLALGARFALGAGVPVVGYDDTPVAEALGISSVEQPLVEVASAAVELLMGTGRSVLPASTGHRLLAPRVVWRG
Curtobacterium pusillum strain AA3 chromosome, complete genome
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 3973750 bps
Phages: 2
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: BUE88_RS09855 (Region 1)
Locus: BUE88_RS09855ORF Start: 2108098
ORF Stop: 2108394
Strand: Backward
Protein Sequence: MAVSIKPLEDRIVIRQVEAEQTTASGLVIPDTAKEKPQEGEVVAVGPGRIDDNGNRVPLDVAVGDKVIYSKYGGTEVKYSGEDLLVLSARDVLAVIEH
Homolog/Ortholog Species: Fiber protein
Homolog/Ortholog Protein: BUE88_RS09855, L-shaped tail fiber protein, phage(gi100266), PHAGE_Serrat_BF_NC_041917
Homolog/Ortholog E-Value: 2.14e-08
Locus 2: BUE88_RS09860 (Region 1)
Locus: BUE88_RS09860ORF Start: 2108558
ORF Stop: 2109760
Strand: Forward
Protein Sequence: MEAADLAQLLTPEGMALLDRTPAVSDGGEIVRVVSRLRSEGHDPGLVAAVLTQARLRQKARGKFGDFAARMLFTEAGLEQATRLQVAAQHAGRFAAAGLTRVADLGCGIGGDAMAMAALDLEVTAVDRDEVTAAVATHNLALWPSARVELGDAAEFDLSRVDGVWMDPARRTSGHTNTKRLADPDDWSPSLDTVFASATTTPTGVKLGPGVDRDLIPDTAEAQWTSVDREVVELALWFGPLARPGIRRAATVIGSHGIAELTGAADALDEEVGPLGAYLYEPDGAVIRARLIGDLARSLGGHMLSDGIAYVTSDQAVTTPFAQGFRVVDTLPLDVKQLAARLAADDIGTVEIKKRGVDVDPAQFRKRLRLRGRGRVTLVLTRLEGRHTAILCERLTDGAG
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: BUE88_RS09860, SAM-dependent methyltransferase
Homolog/Ortholog E-Value: N/A
Locus 3: BUE88_RS09865 (Region 1)
Locus: BUE88_RS09865ORF Start: 2109910
ORF Stop: 2110623
Strand: Backward
Protein Sequence: MSDQNQWPKPGESTPDGGASANQPAPEPGAPSSAAQPEFGQPQQYGASAPEGSSEAPQNPYAAPSNPYAAPGQSGPQGQPGYGAPQNPYAAPQNPYAPPSNPYAAPQQPNANPYGAQQGSNPYAAPAYAPGGYQPYAQRPKTNVLAILSIVFAFGGIIIWPLIILTSPAGAIMGHIALGKIKQSGEGGRGLALAGVIGGWVLTGLFILIVGLFIIIGVAAGNSSNYDYGYDSGAFIG
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: BUE88_RS09865, DUF4190 domain-containing protein
Homolog/Ortholog E-Value: N/A
Locus 4: BUE88_RS09870 (Region 1)
Locus: BUE88_RS09870ORF Start: 2110734
ORF Stop: 2111789
Strand: Backward
Protein Sequence: MTAAEPLVLGIETSCDETGVGIVRGTTLLANVIASSMDEHARYGGVVPEVAARAHLEAMTPTLSAALEQAGVTLDELDAVAVTAGPGLAGALMVGVGAAKALAVATGKPLYGVNHLVGHVGADVLRTDGSEIELPTVALLVSGGHTSLLLVRDLVGDVELLGETIDDAAGEAFDKVARLLGLPYPGGPQIDKAAADGDPTAIRFPRGLTLPKDMAAHRYDFSFSGLKTAVARWVERCRDEGREVPVADVAASFREAVVDVLLTKALNACRDTGVDRLLLGGGVVANARLRAVAEERCAAAGVALRIPPFDLCTDNGAMIAAVGARLVAEGHAPSDLGIAADSTLPVTTVQV
Homolog/Ortholog Species: Protease
Homolog/Ortholog Protein: BUE88_RS09870, glycation-binding protein, predicted protease/chaperone, essential for genome maintenance, phage(gi16130960), PROPHAGE_Escher_MG1655
Homolog/Ortholog E-Value: 6.77e-83
Locus 5: BUE88_RS09875 (Region 1)
Locus: BUE88_RS09875ORF Start: 2111776
ORF Stop: 2112276
Strand: Backward
Protein Sequence: MWLEHTSFPTDAWSASQMSGELYSPHGYYVVVETTEDGAPTIVGYAGLSSLAGNPVADVQTIAVAAEQRGKGIGRVLFTELLAEARRRGVHEVFLEVRADNPVAQAMYTAFGFERIAVRPRYYQPDGVDAWVMRAALEPAAQAPTSAPSPSSTVGPIGQEALDDRS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: BUE88_RS09875, hypothetical protein, phage(gi100097), PHAGE_Erwini_vB_EamM_EarlPhillipIV_NC_031007
Homolog/Ortholog E-Value: 1.18e-05
Locus 6: BUE88_RS09880 (Region 1)
Locus: BUE88_RS09880ORF Start: 2112333
ORF Stop: 2112968
Strand: Backward
Protein Sequence: MLLAIDTSAGTSVAVVDPATGQARATCSTEDSRRHAEVIGPFLVEVLDEAGITGADVTGVVAGMGPGPFTGLRVGIAAARTFAAARGVPFLPLVSHDAVAADQRASGRDGAFVVLTDARRREVYWSAYDETGTRVAGPGLAKPDDLDEAIRASRPDAVDWDRVTVASIPAWRLGALAADRLTSGTPFAQDTPLYLRDPDVTVPGAPKRVKQ
Homolog/Ortholog Species: Protease
Homolog/Ortholog Protein: BUE88_RS09880, protease specific for Gcp(YgjD), essential for nucleoid maintanence, phage(gi16129761), PROPHAGE_Escher_MG1655
Homolog/Ortholog E-Value: 5.32e-13
Locus 7: BUE88_RS09885 (Region 1)
Locus: BUE88_RS09885ORF Start: 2112989
ORF Stop: 2114155
Strand: Backward
Protein Sequence: MRTSDFTSERFGVVARQAVGAWTHPYFLPAIMPRRLDLQMETVTAVSRATLELGNLGGLGQLVREPELLLGPSMAQEALASSRIEGTQASLSDVLSAETSDQPIIDHNLREVSSYLAAADVGVRLLQTLPLTQRFITELHAVLMRDVRGEEKSPGELRRSPVWIGSPDARPDTAKFIPPHQQHLPELLSDWERFVNDDGSALPIVVKSALMHYQFETIHPFLDGNGRIGRLLINFSLMADQVLPAPILHISGYFEAHRTEYYARLQGVRERGEIDEWIQFFSAGVAQRARESAERIRSLVEIRERYRDEVRGDRSALSGLVDVVFRNPVVTSDAVQRALGVSQPTASNLLRRAVERGWLEPRPRFGRGGRGRWVAVEVWDAVRSPLDE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: BUE88_RS09885, ORF56, phage(gi13786587), PHAGE_Lactoc_TP901_1_NC_002747
Homolog/Ortholog E-Value: 9.11e-08
Locus 8: BUE88_RS09890 (Region 1)
Locus: BUE88_RS09890ORF Start: 2114296
ORF Stop: 2116941
Strand: Backward
Protein Sequence: MNDRTTNTALTIPQMSLVLLVGTSGSGKSTFAAKHFGPYETLSSDVFRGLVSNDEDDQAATPAAFDALKHVAALRLRKGLLTVVDATNVQPEARRDFVRLARDHDVLPVAIVLDVPESVCVARNAARSGRDFGSAVVRRQQGQLRRGLKGLGKEGFRRVHVLRGEDEIAAATIVRQPLLNDRKDEHGPFDVVGDVHGCRSELESLLGRLGWTVVRDEAGRPVDAVHPDGRRALFLGDLVDRGPDTPGVLRLVMGMVRNGHALAVPGNHEDKLVRALDGRKVRTSHGLAETLAQLAAESEEFRTEVREFCRSLVGHLVLDDGALVVAHAGMKEQYQGRASGRVRSFALYGDTTGESDEYGLPVRLPWADSYRGSAMVLYGHTPTVDTEWINGTMCLDTGCVFGGKLSALRYPEREVVQVDAERVHYEPAKPLEPLRGPATSSTDGDAAEAGRASSPTQQADGRRGAGPSPRRVPGVLPIEDVTGKQIVETRHHGRIGIRAENAAGALEVMSRFAIDPRWLPYLPPTMSPVATSALPDHLEHPAEAFAYYRGQGVTQVRMEEKHMGSRATVLLARDPARFDAPSGWHGVVYTRTGRSFFDDATTATFTGRLSDAFERAGLWAELDSDWVLLDGEVLPWAVKAECMIRDWYAEVGAAAAGAFPSAIAALESARDAGVDVSALLDRTRRRSDDAEAYVASYRRYATPATGFDDVRFAPFQVLAAEGRTFADRPHGWHMDVADRLAAAAPDVVRATRSVLVDVDDEASRAAGADWWQDLTGAGGEGAVVKPEGNLTRGPKGLVQPGVKVRGREYLRIIYGPEYTEPANLARLRDRDLGHKRSMALREYALGLESLERFVAGEPLWRVHQPVFGVLAMESEPVDPRL
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: BUE88_RS09890, hypothetical protein, phage(gi100253), PHAGE_Agroba_Atu_ph07_NC_042013
Homolog/Ortholog E-Value: 4.24e-31
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Click on a sequence to see details.
Locus 1: BUE88_RS12890 (Region 2)
Locus: BUE88_RS12890ORF Start: 2694400
ORF Stop: 2696487
Strand: Forward
Protein Sequence: METVPIAHRRAAEQDGTRWDIQGLRAFAVLAVVLYHLWPARLPGGFVGVDVFFVISGYLITGHLLREQLADGRIALGRFWARRAKRLLPGAFVTILATGAAVLAVVPNALWGQYGRELIASTVYLQNWQLASDAVDYLASDADPSPFQHFWSLSVEEQFYIALPLLLVLCAVVFRRRGRSPVVTARWLLGAVFVLSLAWCVVQTRTVPGVAYFSTGTRAWEFALGGLAATVPAALLTGRRAVRTTGALLGTVALLVALVVITPATPFPGTAALLPVGGATLVVLCGGGTVLETVGRIPPVAFTGRISYAVYLWHWPAIVLLPIALGHPLGAGWKLLVLGGSIGVAAASTVLLEEPLRFSARVRAMRPRRTALYGALSTVVVVALGASTLVALDVQQRQATEFAQALQRGDAPCFGAAARIGFDDPCTNPRLDDVRVPAASIAAKDDHNSADCWSGFEATLKTCTVGATTGATKHLFAVGDSHSNAWLAVYDEIGKRNGWRIEVAGHGGCYLTTARQDAPQQFQVDNCETWKRAVEQKIATEDLDGVIVTHAATVYPVVAQDGRSAAEATIAGQVEAWRTATDRGIPVVAIRDNPRPRQDVVACVGAMPAGPTTSACDTPRSAAFPASDGQREAAARVGPLAHVVDLTRYYCDATTCPAVIGGVLVYRDGSHQTLTFAKTLRPYLEQGLLTALGGA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: BUE88_RS12890, hypothetical protein, phage(gi100030), PHAGE_Gordon_BritBrat_NC_030942
Homolog/Ortholog E-Value: 3.80e-95
Locus 2: BUE88_RS12895 (Region 2)
Locus: BUE88_RS12895ORF Start: 2696497
ORF Stop: 2697390
Strand: Forward
Protein Sequence: MHTEVPRPHIDAALVERLVADQFPEWAGLPVHEVDPQGWDNRTYRLGSELSVRLPSAAGYVAAVEKEQRVLPYLARRLDVPVPEPVGLGTPTDGYPFPWSVRRWIDGTVALRAPRLDRARFAADVGTVLRQLRAIRAADGPVAGAHSFHRGAHPSQYASEVVAALDTLGAAVDRRACERVWDEAVASAWDGPGVWFHGDVAPGNLLVDGDGRLSALIDFGTCGVGDPACDLVLAWTFLDADARRVFRDVVALDAATWARGRGWALWKSLIMLAGSAGPGDRVEHQRVLDAVLADPVV
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: BUE88_RS12895, aminoglycoside phosphotransferase family protein
Homolog/Ortholog E-Value: N/A
Locus 3: BUE88_RS12900 (Region 2)
Locus: BUE88_RS12900ORF Start: 2697533
ORF Stop: 2698726
Strand: Forward
Protein Sequence: MRALTWQGTEKVSVETVPDPTIQEPTDAIVRITSTAICGSDLHLYRVLGAYIDKGDVLGHEPMGIVEAVGSEVTNLKVGDRVVVPFNISCGHCWMCRNGLQSQCETTQTADYGTGASLFGYTKMYGQVPGGQAEYLRVPHADYGPIVVPSDGSPDDRWLFLSDILPTAWQAVQYADVPEGGTLAVLGLGPVGQFAARIGAHLGYRVLAVDPEQVRRDLASKHGAEVFDLTKDVVPQLIDLTDGRGPDGVVDAVGMEAHGNPFASFAQRAAGLLPDAIAQKAIETAGVDRLAAVHAAIDLVRRGGTVSLSGVYGGRADPMPMFTLFDKQITVREGQCNVRRWIDDLMPLVSDTSDPLGTLDLTTHRVSLEDAPHMYEVFQKKEDGCVKVVLDPSLAAA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: BUE88_RS12900, zinc-containing alcohol dehydrogenase superfamily protein, phage(gi326781942), PHAGE_Synech_S_SM2_NC_015279
Homolog/Ortholog E-Value: 5.10e-08
Locus 4: BUE88_RS12905 (Region 2)
Locus: BUE88_RS12905ORF Start: 2698726
ORF Stop: 2699766
Strand: Forward
Protein Sequence: MRIVVVGATGNVGTAVVRRLAAARADDGSSSEVVGVARRLPDLRADPYGSAVWHAVDVGAHDAVDQLTAVFQGSDAVVHLAWALQPTHDIPTQYRTNVTGTANVLEAVARAGVPQVVVASSVGTYRGVDVDGKRTPVDESWPATGIPTATYSIHKAANEAAMDRFEAQHPDTVVTRLRPGLIFQRDAAAEIRGLFLGHLVPMSIVRWIRWAVLPLPLPFVFQAVDADDVADAYWRAIDRRAGGAFNIAASPVLNPPRLARAFGMLGAIRAPMWLIRGIVTLTWRLRLQPTDAGWVDIAAQVPVMRTDKARSVLGWEARHTSEDALRELVAGFADGARVPGSGPLRG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: BUE88_RS12905, hypothetical protein, phage(gi100233), PHAGE_Synech_ACG_2014f_NC_026927
Homolog/Ortholog E-Value: 2.86e-05
Locus 5: BUE88_RS12910 (Region 2)
Locus: BUE88_RS12910ORF Start: 2699853
ORF Stop: 2700179
Strand: Forward
Protein Sequence: MAFEETDNPLVPAGYDLVGSLIMVGGVIVVLGMIAVIVLAVYRSTRMANRGQNPLTLTEDLAFQATQSATLAPVKSIEQRLAELDDLHARGVISDEEHRSARAEALRG
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: BUE88_RS12910, SHOCT domain-containing protein
Homolog/Ortholog E-Value: N/A
Locus 6: BUE88_RS12915 (Region 2)
Locus: BUE88_RS12915ORF Start: 2700189
ORF Stop: 2700608
Strand: Forward
Protein Sequence: MLLPTDLLGDWVLRRRVDDRRAGVDGTVTGTTTLTSTGPDEVRWDESGTMTFDGRTVPVSRTLHVRRADDDRWTVFFADGRPFHDWIWDERVDHACAPDDYTGVLAGDADRWTVRWEAHGPAKDYVLDSELRRRSHPAD
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: BUE88_RS12915, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 7: BUE88_RS12920 (Region 2)
Locus: BUE88_RS12920ORF Start: 2700613
ORF Stop: 2701278
Strand: Forward
Protein Sequence: MPRSSGTDAPRITLTEPADLDDWTPGPGDVLTGDRIEGKRIETLDLAGERLPDVEIEESVIGTLRVDGADLRGLRVRDSVVEVLDAPVLRASSSAWREVRIAGGRVGSAELYDAGLNGVEFVGMKLGFVNLRGSTLTDVVFRDCVIDELDIADARLLRVSFDGTRIRAAEGSNTRIDHVDLRGADLDRVERLEGFRGATIAADQLYTLAPLLAAQAGYRVD
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: BUE88_RS12920, pentapeptide repeats family protein, phage(gi971764755), PHAGE_Microc_MaMV_DC_NC_029002
Homolog/Ortholog E-Value: 2.11e-10
Locus 8: BUE88_RS12925 (Region 2)
Locus: BUE88_RS12925ORF Start: 2701263
ORF Stop: 2702267
Strand: Backward
Protein Sequence: MRDHYDVIVIGGAAAGLSAALILGRSRRSVLVVDAGEPRNAPAEGAHNYLGREGASPSELYGIGRDEVAAYGVEVTAGRIVAASGTDGDGIDPVGFSVTLESGAVVTARRLVVASGAVDVLPEVPGLAEQWGRGVVHCPFCHGWEIRDQRIGVLVTTPNGAHHALMFRALSEDVTAFVTDPALVDDTALAGLRARGIRVVTGQVSEVLSSGGVLSGVQLGSGDVVPLDALAAASTVEARVGFLSGLGLEAVDQVMGDFRFGSALAVDPAGQTSVRGVYAAGNVASPMATVIASAAAGTQAGAAVHGDLVQADLAAALAGVGTGRPEARGGQSTR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: BUE88_RS12925, gp344, phage(gi593777800), PHAGE_Bacill_G_NC_023719
Homolog/Ortholog E-Value: 8.45e-05
Locus 9: BUE88_RS12930 (Region 2)
Locus: BUE88_RS12930ORF Start: 2702335
ORF Stop: 2702949
Strand: Forward
Protein Sequence: MTHGREERITPRTTAEVVDGVGARLRALRAHRDVTLAALAAETGISVSTLSRLESGQRKPTLELLLPLARAYQVPLDDLVGAPQTGDPRVHLKPELHGGRVVVPLTRRTGGVRSFKQLFPPNSPGGEPSLKTHEGYEWLYVLSGRLRLVLGEHDLDLGPGEVAEFDTHTPHWIGNVTDEVTEVLCLYGPQGERAHVRARPTRGS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: BUE88_RS12930, gp45, phage(gi327198043), PHAGE_Burkho_KS5_NC_015265
Homolog/Ortholog E-Value: 3.57e-08
Locus 10: BUE88_RS12935 (Region 2)
Locus: BUE88_RS12935ORF Start: 2702956
ORF Stop: 2703942
Strand: Backward
Protein Sequence: MTHPATVADVALAAGVSRQTVSNVLNRPEVVRPETLSRVQAAIQGLGYRPHASARRLRTRQSSTLGVRLEPVHGISGAVLDRFLHALVESADERGMRILLFTATDVDDELTHMERLVEGSDVDGFVLTSTFHGDPRAAWLGDRDIPFVTFGRPWGLPDMDAAPHPWVDVDGRSGLREATDHLVAQGHRRVGFLGWPSPSGQGDERRRGWQDALRAAGLPDADGLTCEDDVTAATSTVAAAIDDGAGFDALVCASDTLALGARFALGAGVPVVGYDDTPVAEALGISSVEQPLVEVASAAVELLMGTGRSVLPASTGHRLLAPRVVWRG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: BUE88_RS12935, hypothetical protein, phage(gi100002), PHAGE_Entero_DE3_NC_042057
Homolog/Ortholog E-Value: 3.05e-15
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download