Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1160547776

GenInfo (GI) Number: 0000000000

Download Results: 1160547776.PHASTER.zip

gi|00000000|ref|KX868552.1| Klebsiella variicola strain H152460787 plasmid pJF-787, complete 77843, gc%: 54.31%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
136Kbintact120232260-38338 info_outlinePHAGE_Entero_BP_4795_NC_004813(4)51.88%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|KX868552.1| Klebsiella variicola strain H152460787 plasmid pJF-787, complete 77843, gc%: 54.31%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 25 CDS

#CDS PositionBLAST HitE-ValueSequence
12260..2271attL0.0Showinfo_outline
2complement(9068..9718)PHAGE_Staphy_StB27_NC_019914: integrase; -; phage(gi431809677)1.75e-07Showinfo_outline
3complement(10108..10365)hypothetical protein; -0.0Showinfo_outline
4complement(10394..10681)PHAGE_Gordon_CaptainKirk2_NC_031072: hypothetical protein; -; phage(gi100036)1.52e-05Showinfo_outline
5complement(10678..10929)YafN; -0.0Showinfo_outline
6complement(11191..11484)hypothetical protein; -0.0Showinfo_outline
7complement(11484..12122)PHAGE_Burkho_KS14_NC_015273: gp40; -; phage(gi327198309)1.99e-19Showinfo_outline
8complement(12339..13154)PROPHAGE_Escher_MG1655: IS2 transposase TnpB; -; phage(gi16132094)1.76e-170Showinfo_outline
9complement(13202..13567)PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; -; phage(gi17546153)5.69e-56Showinfo_outline
10complement(13877..14761)PHAGE_Burkho_phi1026b_NC_005284: gp58; -; phage(gi38707948)4.13e-21Showinfo_outline
1114903..15781PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; -; phage(gi100066)4.00e-83Showinfo_outline
1215836..16327hypothetical protein; -0.0Showinfo_outline
13complement(18337..19875)PHAGE_Stx2_c_1717_NC_011357: transposase; -; phage(gi209447153)0.0Showinfo_outline
14complement(19925..20272)PHAGE_Stx2_c_1717_NC_011357: transposase; -; phage(gi209447152)2.04e-75Showinfo_outline
15complement(20269..20646)PHAGE_Stx2_c_1717_NC_011357: truncated transposase; -; phage(gi209447151)3.18e-77Showinfo_outline
16complement(21291..21614)Stress responsive A/B Barrel Domain protein; -0.0Showinfo_outline
17complement(21757..22014)hypothetical protein; -0.0Showinfo_outline
18complement(21980..22270)PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; -; phage(gi157166063)1.69e-55Showinfo_outline
19complement(22676..23002)PHAGE_Stx2_c_1717_NC_011357: putative transposase; -; phage(gi209447180)1.34e-61Showinfo_outline
20complement(23052..23492)IS91 family transposase; -0.0Showinfo_outline
2123560..24021hypothetical protein; -0.0Showinfo_outline
22complement(24116..25078)hypothetical protein; -0.0Showinfo_outline
2325276..25884hypothetical protein; -0.0Showinfo_outline
24complement(25881..26810)PROPHAGE_Escher_MG1655: predicted transposase; -; phage(gi16131287)4.79e-112Showinfo_outline
2538338..38349attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 77843 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download