Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1163046504

GenInfo (GI) Number: 0000000000

Download Results: 1163046504.PHASTER.zip

gi|00000000|ref|CP020063.1| Klebsiella pneumoniae strain AR_0117 plasmid unitig_2, complete 109019, gc%: 49.16%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
1108.6Kbintact150124103-108790 info_outlinePHAGE_Salmon_SSU5_NC_018843(93)49.16%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP020063.1| Klebsiella pneumoniae strain AR_0117 plasmid unitig_2, complete 109019, gc%: 49.16%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 128 CDS

#CDS PositionBLAST HitE-ValueSequence
1103..315PHAGE_Salmon_SSU5_NC_018843: putative Cre-associated protein; AM364_28270; phage(gi410491478)1.19e-36Showinfo_outline
2complement(767..1984)PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; AM364_28275; phage(gi410491479)6.45e-98Showinfo_outline
32186..2830PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28280; phage(gi410491480)7.66e-128Showinfo_outline
42906..3400PHAGE_Salmon_SSU5_NC_018843: putative GNAT family acetyltransferase; AM364_28285; phage(gi410491481)1.25e-78Showinfo_outline
5complement(3507..3590)hypothetical protein; AM364_282900.0Showinfo_outline
63589..4674PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 1; AM364_28295; phage(gi410491483)0.0Showinfo_outline
74674..4907PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28300; phage(gi410491484)9.70e-25Showinfo_outline
84904..6820PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 2; AM364_28305; phage(gi410491485)0.0Showinfo_outline
96846..7556PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28310; phage(gi410491486)2.60e-97Showinfo_outline
107566..8135PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H-like domain-containing protein; AM364_28315; phage(gi410491487)5.44e-127Showinfo_outline
118211..10514PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, alpha subunit; AM364_28320; phage(gi410491488)0.0Showinfo_outline
1210645..11787PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, beta subunit; AM364_28325; phage(gi410491489)0.0Showinfo_outline
1311865..12739PHAGE_Salmon_SSU5_NC_018843: putative phosphoribosyl-ATP pyrophosphohydrolase-like domain-containing protein; AM364_28330; phage(gi410491490)1.95e-168Showinfo_outline
1412933..14036PHAGE_Salmon_SSU5_NC_018843: putative thymidylate synthase; AM364_28335; phage(gi410491491)0.0Showinfo_outline
1514056..14451PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28340; phage(gi410491492)7.99e-66Showinfo_outline
1614454..14924PHAGE_Salmon_SSU5_NC_018843: putative dihydrofolate reductase; AM364_28345; phage(gi410491493)9.05e-90Showinfo_outline
1714924..15568PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28350; phage(gi410491494)1.55e-123Showinfo_outline
1815632..16051PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28355; phage(gi410491495)3.56e-73Showinfo_outline
1916061..16618PHAGE_Salmon_SSU5_NC_018843: putative exonuclease; AM364_28360; phage(gi410491496)3.48e-114Showinfo_outline
2016744..17577PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28365; phage(gi410491497)1.47e-102Showinfo_outline
2117763..18356PHAGE_Salmon_SSU5_NC_018843: putative N-6-adenine-methyltransferase; AM364_28370; phage(gi410491498)6.83e-128Showinfo_outline
2218554..18781PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28375; phage(gi410491499)4.44e-43Showinfo_outline
2319361..19954PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H; AM364_28380; phage(gi410491500)2.29e-117Showinfo_outline
2420107..20646PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28385; phage(gi410491501)1.50e-36Showinfo_outline
2520656..20844PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28390; phage(gi410491502)2.51e-12Showinfo_outline
2620905..20920attL0.0Showinfo_outline
2721001..21372PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM364_28395; phage(gi100118)9.17e-70Showinfo_outline
2821372..21527PHAGE_Escher_Pollock_NC_027381: hypothetical protein; AM364_28400; phage(gi849254797)1.11e-09Showinfo_outline
2921655..22233PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28405; phage(gi410491504)2.55e-74Showinfo_outline
3022362..22466PHAGE_Salmon_SSU5_NC_018843: putative DNA modification methylase; AM364_28410; phage(gi410491505)5.83e-09Showinfo_outline
3122604..22867PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28415; phage(gi410491513)1.98e-33Showinfo_outline
32complement(23138..25063)hypothetical protein; AM364_284200.0Showinfo_outline
33complement(25084..25431)hypothetical protein; AM364_284250.0Showinfo_outline
3425802..27334PROPHAGE_Escher_MG1655: IS150 transposase B; AM364_28430; phage(gi16131429)1.65e-68Showinfo_outline
3527517..27834PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28435; phage(gi410491515)2.44e-53Showinfo_outline
3627917..28753hypothetical protein; AM364_284400.0Showinfo_outline
3728826..29341hypothetical protein; AM364_284450.0Showinfo_outline
38complement(30198..30320)hypothetical protein; AM364_284500.0Showinfo_outline
3930927..31145PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28455; phage(gi410491521)8.97e-37Showinfo_outline
4031158..31370PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28460; phage(gi410491522)1.65e-33Showinfo_outline
4131519..31818PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28465; phage(gi410491523)1.10e-42Showinfo_outline
4231926..32345PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28470; phage(gi410491524)1.09e-29Showinfo_outline
43complement(32450..32603)hypothetical protein; AM364_284750.0Showinfo_outline
4432556..32753PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28480; phage(gi410491525)6.97e-34Showinfo_outline
4532958..33440PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28485; phage(gi410491527)2.52e-92Showinfo_outline
46complement(33419..33721)hypothetical protein; AM364_284900.0Showinfo_outline
47complement(34020..34223)PHAGE_Salmon_SSU5_NC_018843: putative MIT family metal ion transporter CorA; AM364_28495; phage(gi410491529)2.75e-39Showinfo_outline
48complement(34274..34924)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28500; phage(gi410491530)4.00e-145Showinfo_outline
49complement(35558..36088)PHAGE_Salmon_SSU5_NC_018843: putative repressor of phase 1 flagellin; AM364_28505; phage(gi410491531)1.72e-92Showinfo_outline
5036247..36681PHAGE_Salmon_SSU5_NC_018843: putative lipoprotein; AM364_28510; phage(gi410491532)1.00e-15Showinfo_outline
51complement(36732..37007)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28515; phage(gi410491533)8.64e-40Showinfo_outline
52complement(37010..38569)PHAGE_Salmon_SSU5_NC_018843: putative helicase; AM364_28520; phage(gi410491534)0.0Showinfo_outline
5338629..39333PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; AM364_28525; phage(gi410491535)4.41e-146Showinfo_outline
5439333..40001PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; AM364_28530; phage(gi410491536)2.20e-145Showinfo_outline
5539998..40639PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; AM364_28535; phage(gi410491537)9.81e-150Showinfo_outline
5640629..41180hypothetical protein; AM364_285400.0Showinfo_outline
5741177..42067PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; AM364_28545; phage(gi410491539)0.0Showinfo_outline
5842077..42343PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28550; phage(gi410491540)8.05e-42Showinfo_outline
5942519..43160PHAGE_Salmon_SSU5_NC_018843: putative DNA-binding protein; AM364_28555; phage(gi410491411)1.27e-109Showinfo_outline
6043163..44419PHAGE_Salmon_SSU5_NC_018843: putative terminase large subunit; AM364_28560; phage(gi410491412)0.0Showinfo_outline
6144437..45265PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28565; phage(gi410491413)0.0Showinfo_outline
6245379..46026PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28570; phage(gi410491413)3.94e-137Showinfo_outline
6346049..46948PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28575; phage(gi410491414)0.0Showinfo_outline
6446975..47853PHAGE_Salmon_SSU5_NC_018843: putative major capsid protein; AM364_28580; phage(gi410491415)0.0Showinfo_outline
6547932..48360PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; AM364_28585; phage(gi410491416)1.23e-39Showinfo_outline
66complement(48336..48524)hypothetical protein; AM364_285900.0Showinfo_outline
6748543..48842PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28595; phage(gi410491417)7.81e-52Showinfo_outline
6848842..49675PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28600; phage(gi410491418)5.29e-177Showinfo_outline
6949773..50117PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28605; phage(gi410491419)3.73e-73Showinfo_outline
7050108..50581PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28610; phage(gi410491420)2.78e-103Showinfo_outline
7150583..50975PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28615; phage(gi410491421)6.64e-63Showinfo_outline
7251043..51789PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; AM364_28620; phage(gi410491422)1.18e-145Showinfo_outline
7351851..52168PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28625; phage(gi410491423)1.71e-64Showinfo_outline
7452294..52518PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28630; phage(gi410491424)7.46e-43Showinfo_outline
7552526..57061PHAGE_Salmon_SSU5_NC_018843: putative tail tape measure protein; AM364_28635; phage(gi410491425)0.0Showinfo_outline
7657105..57440PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein M; AM364_28640; phage(gi410491426)2.34e-67Showinfo_outline
7757527..58225PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein L; AM364_28645; phage(gi410491427)2.50e-158Showinfo_outline
7858218..59015PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; AM364_28650; phage(gi410491428)2.92e-175Showinfo_outline
7959003..59614PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; AM364_28655; phage(gi410491429)2.10e-112Showinfo_outline
8059631..65260PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; AM364_28660; phage(gi410491430)0.0Showinfo_outline
8165313..69187PHAGE_Klebsi_phiKO2_NC_005857: Gp21; AM364_28665; phage(gi46402107)2.22e-77Showinfo_outline
8269147..71768PHAGE_Klebsi_phiKO2_NC_005857: Gp21; AM364_28670; phage(gi46402107)8.61e-143Showinfo_outline
8371821..73266PHAGE_Klebsi_Sushi_NC_028774: tail fiber; AM364_28675; phage(gi971742192)1.36e-50Showinfo_outline
8473357..73680PHAGE_Salmon_SSU5_NC_018843: putative holin; AM364_28680; phage(gi410491436)3.68e-70Showinfo_outline
8573694..74386PHAGE_Salmon_SSU5_NC_018843: putative endolysin; AM364_28685; phage(gi410491437)2.95e-156Showinfo_outline
8674389..74640PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28690; phage(gi410491438)5.14e-36Showinfo_outline
8774633..74782PHAGE_Salmon_SSU5_NC_018843: putative Rz1 protein; AM364_28695; phage(gi410491439)1.27e-18Showinfo_outline
8875057..75449PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28700; phage(gi410491441)2.96e-13Showinfo_outline
8975434..76183PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28705; phage(gi410491442)9.71e-19Showinfo_outline
9076368..77033PHAGE_Salmon_SSU5_NC_018843: putative ParA family protein; AM364_28710; phage(gi410491443)3.60e-132Showinfo_outline
9177039..77395PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28715; phage(gi410491444)2.61e-62Showinfo_outline
9277392..79155hypothetical protein; AM364_287200.0Showinfo_outline
9379329..80054PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28725; phage(gi410491448)1.26e-163Showinfo_outline
9480119..81459PHAGE_Salmon_SSU5_NC_018843: putative DNA helicase; AM364_28730; phage(gi410491449)0.0Showinfo_outline
9581607..82731PHAGE_Salmon_SSU5_NC_018843: putative DNA primase; AM364_28735; phage(gi410491450)0.0Showinfo_outline
96complement(82771..83937)hypothetical protein; AM364_287400.0Showinfo_outline
9784226..85014PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28745; phage(gi410491452)9.01e-94Showinfo_outline
9885094..85561PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28750; phage(gi410491453)2.37e-67Showinfo_outline
9985561..86883PHAGE_Salmon_SSU5_NC_018843: putative DNA ligase; AM364_28755; phage(gi410491454)0.0Showinfo_outline
10086895..87059PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28760; phage(gi410491455)2.48e-19Showinfo_outline
10187043..87258PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28765; phage(gi410491456)2.57e-33Showinfo_outline
10287433..87822hypothetical protein; AM364_287700.0Showinfo_outline
10388752..88826tRNA0.0Showinfo_outline
10488974..89060tRNA0.0Showinfo_outline
105complement(89229..90143)hypothetical protein; AM364_287800.0Showinfo_outline
10690267..91079PHAGE_Erwini_PhiEaH1_NC_023610: PhoH; AM364_28785; phage(gi589287556)1.22e-121Showinfo_outline
10791089..91475PHAGE_Shigel_Sf6_NC_005344: hypothetical protein; AM364_28790; phage(gi41057339)3.65e-63Showinfo_outline
10891472..91717PHAGE_Pseudo_OBP_NC_016571: putative glutaredoxin; AM364_28795; phage(gi371671381)2.47e-14Showinfo_outline
10991812..92429hypothetical protein; AM364_288000.0Showinfo_outline
11092439..92849PHAGE_Escher_HK639_NC_016158: hypothetical protein; AM364_28805; phage(gi356870618)2.28e-17Showinfo_outline
111complement(92913..93269)hypothetical protein; AM364_288100.0Showinfo_outline
11293627..94727PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage integrase protein; AM364_28815; phage(gi169257266)1.60e-23Showinfo_outline
113complement(94722..95102)PHAGE_Rhizob_RHEph10_NC_034248: hypothetical protein; AM364_28820; phage(gi100041)5.82e-10Showinfo_outline
11495376..95588hypothetical protein; AM364_288250.0Showinfo_outline
11595672..95687attR0.0Showinfo_outline
11695705..97984PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; AM364_28830; phage(gi410491459)0.0Showinfo_outline
11798118..98426porphyrin biosynthetic protein; AM364_288350.0Showinfo_outline
11898429..99313PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; AM364_28840; phage(gi410491460)0.0Showinfo_outline
11999316..99519PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28845; phage(gi410491461)1.56e-34Showinfo_outline
12099494..103012PHAGE_Salmon_SSU5_NC_018843: DNA polymerase III alpha subunit; AM364_28850; phage(gi410491462)0.0Showinfo_outline
121103027..103452PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28855; phage(gi410491463)6.64e-81Showinfo_outline
122complement(103605..103820)PHAGE_Lactoc_bIL312_NC_002671: Csp; AM364_28860; phage(gi13095918)1.64e-22Showinfo_outline
123104170..104601PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28865; phage(gi410491466)4.57e-91Showinfo_outline
124104721..105728PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28870; phage(gi410491467)0.0Showinfo_outline
125105789..106733PHAGE_Salmon_SSU5_NC_018843: DNA polymerase I; AM364_28875; phage(gi410491468)0.0Showinfo_outline
126107029..108078PHAGE_Salmon_SSU5_NC_018843: putative RecA-like recombinase; AM364_28880; phage(gi410491470)0.0Showinfo_outline
127108249..108425PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28885; phage(gi410491474)7.74e-17Showinfo_outline
128108611..108790PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM364_28890; phage(gi410491476)4.69e-13Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 109019 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download