Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1163054821

GenInfo (GI) Number: 0000000000

Download Results:

gi|00000000|ref|CP020068.1| Klebsiella pneumoniae strain AR_0068 plasmid unitig_1, complete 276460, gc%: 46.60%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
120Kbincomplete4024108400-128403 info_outlinePHAGE_Escher_Av_05_NC_025830(2)44.86%Show info_outline
222.5Kbquestionable9022223801-246385 info_outlinePHAGE_Staphy_SPbeta_like_NC_029119(2)52.07%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP020068.1| Klebsiella pneumoniae strain AR_0068 plasmid unitig_1, complete 276460, gc%: 46.60%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 26 CDS

#CDS PositionBLAST HitE-ValueSequence
2114122..114991PHAGE_Marino_P12026_NC_018269: putative DNA modification methylase; AM447_28225; phage(gi399528347)2.15e-14Showinfo_outline
3115045..115365PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM447_28230; phage(gi410491515)7.00e-36Showinfo_outline
4115446..115760hypothetical protein; AM447_282350.0Showinfo_outline
5115881..116132PHAGE_Entero_mEp460_NC_019716: hypothetical protein; AM447_28240; phage(gi428782346)8.97e-33Showinfo_outline
6116298..116516PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; AM447_28245; phage(gi514051015)8.75e-28Showinfo_outline
7116610..117107PHAGE_Escher_Av_05_NC_025830: hypothetical protein; AM447_28250; phage(gi730985103)9.42e-37Showinfo_outline
8117104..117292hypothetical protein; AM447_282550.0Showinfo_outline
9117770..117997PHAGE_Salmon_II_E1_NC_010495: hypothetical protein; AM447_28260; phage(gi170676296)1.21e-14Showinfo_outline
10117994..118638PHAGE_Pseudo_phi2_NC_030931: hypothetical protein; AM447_28265; phage(gi100004)7.13e-10Showinfo_outline
11118639..118962PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; AM447_28270; phage(gi327198613)3.37e-19Showinfo_outline
12119055..119441PHAGE_Entero_mEp390_NC_019721: hypothetical protein; AM447_28275; phage(gi428782696)1.44e-11Showinfo_outline
13120140..120355PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; AM447_28280; phage(gi410491522)7.34e-18Showinfo_outline
14120693..121175PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; AM447_28285; phage(gi966201466)2.02e-07Showinfo_outline
15121397..121648hypothetical protein; AM447_282900.0Showinfo_outline
16121703..121816transposase; AM447_282950.0Showinfo_outline
17complement(121762..122466)PROPHAGE_Brucel_1330: transposase, putative; AM447_28300; phage(gi23502708)1.98e-53Showinfo_outline
18122703..122912PHAGE_Stx2_vB_EcoP_24B_NC_027984: hypothetical protein; AM447_28305; phage(gi937456238)9.10e-23Showinfo_outline
19122912..123097hypothetical protein; AM447_283100.0Showinfo_outline
20123367..123639PHAGE_Escher_ECML_117_NC_025441: hypothetical protein; AM447_28315; phage(gi725950145)6.28e-19Showinfo_outline
21124213..124398hypothetical protein; AM447_283200.0Showinfo_outline
22124408..124857phage tail protein; AM447_283250.0Showinfo_outline
23124927..125535PHAGE_Caulob_CcrColossus_NC_019406: putative methyltransferase; AM447_28330; phage(gi414088386)4.19e-33Showinfo_outline
24125823..126278hypothetical protein; AM447_283350.0Showinfo_outline
26127162..128403PHAGE_Entero_mEp390_NC_019721: hypothetical protein; AM447_28340; phage(gi428782698)2.63e-06Showinfo_outline

Region 2, total 24 CDS

#CDS PositionBLAST HitE-ValueSequence
2complement(227621..228358)PHAGE_Escher_pro483_NC_028943: DNA invertase; AM447_28925; phage(gi971758535)2.04e-08Showinfo_outline
3228465..228956hypothetical protein; AM447_289300.0Showinfo_outline
4complement(228990..229694)PROPHAGE_Brucel_1330: transposase, putative; AM447_28935; phage(gi23502708)1.98e-53Showinfo_outline
5229685..230320PHAGE_Bacill_BMBtpLA_NC_028748: IS5 transposase and trans-activator; AM447_28940; phage(gi971482498)4.57e-134Showinfo_outline
6complement(230359..230523)ABC transporter; AM447_289450.0Showinfo_outline
7230705..230986cytoplasmic protein; AM447_289500.0Showinfo_outline
8231040..231651hypothetical protein; AM447_289550.0Showinfo_outline
9complement(231800..232504)PROPHAGE_Brucel_1330: transposase, putative; AM447_28960; phage(gi23502708)1.98e-53Showinfo_outline
10232495..232677hypothetical protein; AM447_289650.0Showinfo_outline
11232641..233501PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM447_28970; phage(gi100066)1.31e-59Showinfo_outline
12complement(233522..234283)DeoR family transcriptional regulator; AM447_289750.0Showinfo_outline
13234586..237603PROPHAGE_Xantho_306: Tn5044 transposase; AM447_28980; phage(gi21243163)3.48e-94Showinfo_outline
14complement(237719..237946)hypothetical protein; AM447_289850.0Showinfo_outline
15237970..238144hypothetical protein; AM447_289900.0Showinfo_outline
16complement(238643..239185)tunicamycin resistance protein; AM447_289950.0Showinfo_outline
17complement(239198..240058)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; AM447_29000; phage(gi9630129)9.16e-24Showinfo_outline
18complement(240191..240403)transposase; AM447_290050.0Showinfo_outline
19complement(240396..242495)PROPHAGE_Xantho_33913: Tn5041 transposase; AM447_29010; phage(gi21231545)2.11e-31Showinfo_outline
20complement(242656..243360)PROPHAGE_Brucel_1330: transposase, putative; AM447_29015; phage(gi23502708)1.16e-53Showinfo_outline
22complement(243737..243961)hypothetical protein; AM447_290200.0Showinfo_outline
23244113..244760PHAGE_Clostr_vB_CpeS_CP51_NC_021325: putative resolvase; AM447_29025; phage(gi509140089)1.17e-28Showinfo_outline
24complement(245375..246385)PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; AM447_29030; phage(gi588498272)5.55e-64Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 276460 bps
Phages: 2
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Portal Protein
Coat Protein
Tail Shaft
Attachment Site
Phage-like Protein
Hypotheical Protein
Fiber Protein
Plate Protein

Download data as .txt file: png_input file_download