PHASTER

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Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1163055369

GenInfo (GI) Number: 0000000000

Download Results: 1163055369.PHASTER.zip

Summary
Details
Genome Viewer

gi|00000000|ref|CP020070.1| Klebsiella pneumoniae strain AR_0068 plasmid unitig_4, complete 37875, gc%: 52.26%

Download summary as .txt file: summary.txt

Total: 2 prophage regions have been identified, of which 0 regions are intact, 2 regions are incomplete, and 0 regions are questionable.

Region	Region Length	Completeness	Score	# Total Proteins	Region Position	Most Common Phage	GC %	Details
1	8.3Kb	incomplete	30	12	19148-27534	PHAGE_Salmon_SJ46_NC_031129(4)	46.92%	Show
2	8.7Kb	incomplete	40	11	27930-36691	PHAGE_Entero_P1_NC_005856(2)	50.96%	Show

Region DNA

>1	 19148-27534
GTGGCTTCAGTCTCCGTCTGCTGTCCCTCCTGTTCCGCTACTGAAGGCGTGATGCGTAATGGCAAAAGTA
CTGCCGGGCATCAACGTTATCTCTGCTCTCACTGCCGTAAAACATGGCAGCTCACCTTCACTTATGCCGC
TTCTCAGCCCGGTACACACCAGAAAATCATTGATATGGCTATGAACGGCGTCGGTTGCCGTGCCACCGCA
CGACTAATGGGCGTGGGCCTCAACACCATTTTGCGCCATTTAAAAAACTCAGGCCGCAGTCAGTAACCTC
CCGGATACAGCCGGGCAGTGATGTCATTGTCTGTGCGGAGATGGACGAGCAATGGGGCTACGTCGGTGCA
AAATCACGTCAGCGCTGGCTGTTTTACGCGTATGACAGGATACGCAGGGCGGTGGTAGCCCACGTTTTCG
GTGAACGCACTATGGCCACACTGGAGCGTCTTCTGAGCCTGCTGTCAGTTTTTGACGTGGTGGTATGGAT
GACGGACGGCTGGCCGATGTATGAGTCACGTCTGAAGGGAAAACTGCACGTCATCAGTAAGCGTTACACG
CAGCGAATTGAGCGACACAACCTGAATCTGAGACAGCATCTGGCAAGGCTGGGCAGGAAGTCCCTGTCGT
TCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCACTATCTGAACATAAAACACTATCAGTAAAT
TGGAGTCATTACCGATCCTTTTAAATTAAAAATGAAGTTTTAAATCAATCTAAAGTATATATGAGTAAAC
TTGGTCTGACAGTTACCAATGCTTAATCAGTGAGGCACCTATCTCAGCGATCTGTCTATTTCGTTCATCC
ATAGTTGCCTGACTCCCCGTCGTGTAGATAACTACGATACGGGAGGGCTTACCATCTGGCCCCAGTGCTG
CAATGATACCGCGAGACCCACGCTCACCGGCTCCAGATTTATCAGCAATAAACCAGCCAGCCGGAAGGGC
CGAGCGCAGAAGTGGTCCTGCAACTTTATCCGCCTCCATCCAGTCTATTAATTGTTGCCGGGAAGCTAGA
GTAAGTAGTTCGCCAGTTAATAGTTTGCGCAACGTTGTTGCCATTGCTGCAGGCATCGTGGTGTCACGCT
CGTCGTTTGGTATGGCTTCATTCAGCTCCGGTTCCCAACGATCAAGGCGAGTTACATGATCCCCCATGTT
GTGCAAAAAAGCGGTTAGCTCCTTCGGTCCTCCGATCGTTGTCAGAAGTAAGTTGGCCGCAGTGTTATCA
CTCATGGTTATGGCAGCACTGCATAATTCTCTTACTGTCATGCCATCCGTAAGATGCTTTTCTGTGACTG
GTGAGTACTCAACCAAGTCATTCTGAGAATAGTGTATGCGGCGACCGAGTTGCTCTTGCCCGGCGTCAAC
ACGGGATAATACCGCGCCACATAGCAGAACTTTAAAAGTGCTCATCATTGGAAAACGTTCTTCGGGGCGA
AAACTCTCAAGGATCTTACCGCTGTTGAGATCCAGTTCGATGTAACCCACTCGTGCACCCAACTGATCTT
CAGCATCTTTTACTTTCACCAGCGTTTCTGGGTGAGCAAAAACAGGAAGGCAAAATGCCGCAAAAAAGGG
AATAAGGGCGACACGGAAATGTTGAATACTCATACTCTTCCTTTTTCAATATTATTGAAGCATTTATCAG
GGTTATTGTCTCATGAGCGGATACATATTTGAATGTATTTAGAAAAATAAACAAATAGGGGTTCCGCGCA
CATTTCCCCGAAAAGTGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAG
GCGTATCACGAGGCCCTTTCGTCTTCAAGAATTTTATAAACCGTGGAGCGGGCAATACTGAGCTGATGAG
CAATTTCCGTTGCACCAGTGCCCTTCTGATGAAGCGTCAGCACGACGTTCCTGTCCACGGTACGCCTGCG
GCCAAATTTGATTCCTTTCAGCTTTGCTTCCTGTCGGCCCTCATTCGTGCGCTCTAGGATCCTCCGGCGT
TCAGCCTGTGCCACAGCCGACAGGATGGTGACCACCATTTGCCCCATATCACCGTCGGTACTGATCCCGT
CGTCAATAAACCGAACCGCTACACCCTGAGCATCAAACTCTTTTCATGATATATCTCCCAATTTGTGTAG
GGCTTATTATGCACGCTTAAAAATAATAAAAGCAGACTTGACCTGATAGTTTGGCTGTGAGCAATTATGT
GCTTAGTGCATCTAACGTTCAAGGTGAGCGGACTCGCGCGGCTTTATGCGCGAGGTCCGCTCGAGCGCAG
GGTTATGCATCTGCTCTCGATGACGCCACATATCATTTGTTACCCATCAACACGGGTAATTCCACGAGAA
TATCCTCTCGTGCTTTAGACCCGCCGGGAATATCGGACTTTTCCTTTCCTATTTCCAATCGGGCGAAAAC
AACTTGCCGTCCGTTTTTTTCAGCCCAGCCCACGAACCAGCCCTGCGGACGACTTTCATTTATCTTGCCG
TTATTGTCCCGAAGCCAGCCGCTGCCGCTTTTTCCATGTACAGCCCATCCTTCGGCTGCCTGGTACTGCG
GGATTGTGGCATACGCCATGTCATAAGCCGCTTCGGATACAGGCAGCTTATGCGCGACAAAGCGTAGAAG
AAACTGAATTTGCTCCTTGGGAGATATGGTGAGCGACGACATCAGCCATGACTGGGTCAAGCCGTTATGC
TTCCCCGAGTCACCGGAAACATCTTGATTACCGTACTCAAATTTCTTTACGTATTCCGTGAACCGATCAA
CTCCCAGACGGCTTGTTAATTGCTGCGAGAACCAGACAACAGAGTCGCTTTGCCATAGCGCCGGATAGAC
TTGTTTGTATGTGCGATCTCTCGGAGACGGGTTGTATTCCGGCTTCAATTCCCACGTAGGTGATTTTGGC
GACTGCAAGATTCCACTATCAAACCCCATGATTGCCAATGGAAGTTTAAAAGACGAGCACGGAGACACAC
GACGGGCACATTCTCCGGTCTCATATAAGGTATTTCCGGTAATGGCGTCTGCGATGATGGTGCATTTAAG
CGTTTCAACCTCATCAGAAGCCACGGAACTGATTGGGAGAGTGGCGGAAACGAACACCAACATATGCAGC
AGCAAAATTTTTTTCATCAAGGTATCCTTCATTGCTCCGCTGTGCGCTTAATAGGTGCATAACTTTGTTT
TAGACATTATTTGCCGACTACCTTGGTGATCTCGCCTTTCACGTAGTGAACAAATTCTTCCAACTGATCT
GCGCGCGAGGCCAAGCGATCTTCTTGTCCAAGATAAGCCTGCCTAGCTTCAAGTATGACGGGCTGATACT
GGGCCGGCAGGCGCTCCATTGCCCAGTCGGCAGCGACATCCTTCGGCGCGATTTTGCCGGTTACTGCGCT
GTACCAAATGCGGGACAACGTAAGCACTACATTTCGCTCATCGCCAGCCCAGTCGGGCGGCGAGTTCCAT
AGCGTTAAGGTTTCATTTAGCGCCTCAAATAGATCCTGTTCAGGAACCGGATCAAAGAGTTCCTCCGCCG
CTGGACCTACCAAGGCAACGCTATGTTCTCTTGCTTTTGTCAGCAAGATAGCCAGATCAATGTCGATCGT
GGCTGGCTCGAAGATACCTGCAAGAATGTCATTGCGCTGCCATTCTCCAAATTGCAGTTCGCGCTTAGCT
GGATAACGCCACGGAATGATGTCGTCGTGCACAACAATGGTGACTTCTACAGCGCGGAGAATCTCGCTCT
CTCCAGGGGAAGCCGAAGTTTCCAAAAGGTCGTTGATCAAAGCTCGCCGCGTTGTTTCATCAAGCCTTAC
GGTCACCGTAACCAGCAAATCAATATCACTGTGTGGCTTCAGGCCGCCATCCACTGCGGAGCCGTACAAA
TGTACGGCCAGCAACGTCGGTTCGAGATGGCGCTCGATGACGCCAACTACCTCTGATAGTTGAGTCGATA
CTTCGGCGATCACCGCTTCCCTCATGATGTTTAACGTTTGACATGAGGGGCGGCCAAGGGCGCCAGCCCT
TGGACGTCCCCCTCGATGGAAGGGTTAGGCAACACTGCGTGTTCGCTCGAATGCCTGGCGTGTTTGAACC
ATGTACACGGCTGGACCATCTGGGGTGGTTACGGTACCTTGCCTCTCAAACCCCGCTTTCTCGTAGCATC
GGATCGCTCGCAAGTTGCTCGGCGACGGGTCCGTTTGGATCTTGGTGACCTCGGGATCATTGAACAGCAA
CTCAACCAGAGCTCGAACCAGCTTGGTTCCCAAGCCTTTGCCCAGTTGTGATGCATTCGCCAGTAACTGG
TCTATTCCGCGTACTCCTGGATCGGTTTCTTCTTCCCACCATCCGTCCCCGCTTCCAAGAGCAACGTACG
ACTGGGCATACCCAATCGGCTCTCCATTCAGCATTGCAATGTATGGAGTGACGGACTCTTGCGCTAAAAC
GCTTGGCAAGTACTGTTCCTGTACGTCAGCAAGTGTCGGGCGTGCTTCTTCTCCGCCCCACCACTCGACG
ATATGAGATCGATTTAGCCACTCATAGAGCATCGCAAGGTCATGCTCAGTCATGAGGCGCAGTGTGACGG
AATCGTTGCTGTTGGTCACGATGCTGTACTTTGTGATGCCTAACTTTGTTTGGAAATGTTGAATACTCAT
ACTCTTCCTTTTTCAATATTATTGAAGCATTTATCAGGGTTATTGTCTCATGAGCGGATACATATTTGAA
TGTATTTAGAAAAATAAACAAATAGGGGTTCCGCGCACATTTCCCCGAAAAGTGCCACCTGACGTCTAAG
AAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTATCACGAGGCCCTTTCGTCTTCAAGAATT
TTATAAACCGTGGAGCGGGCAATACTGAGCTGATGAGCAATTTCCGTTGCACCAGTGCCCTTCTGATGAA
GCGTCAGCACGACGTTCCTGTCCACGGTACGCCTGCGGCCAAATTTGATTCCTTTCAGCTTTGCTTCCTG
TCGGCCCTCATTCGTGCGCTCTAGGATCCTCCGGCGTTCAGCCTGTGCCACAGCCGACAGGATGGTGACC
ACCATTTGCCCCATATCACCGTCGGTACTGATCCCGTCGTCAATAAACCGAACCGCTACACCCTGAGCAT
CAAACTCTTTTATCAGTTGGATCATGTCGGCGGTGTCGCGGCCAAGACGGTCGAGCTTCTTCACCAGAAT
GACATCACCTTCCTCCACCTTCATCCTCAGCAAATCCAGCCCTTCCCGATCTGTTGAACTGCCGGATGCC
TTGTCGGTAAAGATGCGGTTAGCTTTTACCCCTGCATCTTTGAGCGCTCTGATCTGAATATCGAGGGACT
GCTGGCTGGTTGAGACCCGCGCATAACCAAAAATTCGCATAAAAATGTACCTTAAATCGAATATCAGACA
CGATGTGTCTATTATGCCAAAATGACGATTTAATGGACACTCAAACGAAGCCGTTTTACTATGTCTGATA
ATTTATAACATTTCGTACGGTTGGAAAAGTGTTACTAAATGCCCGTCAGGCAGGGAGGCCGATATGCCCG
TTGACTTTCTGACCACTGAGCAGACTGAAAGCTATGGCAGATTCACCGGTGAACCGGATGAGCTTCAGCT
GGCACGATATTTTCACCTTGATGAAGCAGACAAGGAATTTATCGGAAAAAGCAGAGGTGATCACAACCGT
CTGGGCATTGCCCTGCAAATTGGATGTGTCCGTTTTCTGGGCACCTTCCTCACCGATATGAATCATACCT
AGATTCTACGTCAGTACTTCAAAAAGCATAATCAAAGCCTTGATAAATATGCATTCCTTCGAAATTCAGC
TTTCACCCATTGGGTGAAAGAAAAGTGCTCAAAAATATGTTAAATTATCAGCTTTTATGACTCGATATAT
GGTAAAATAATAGTAAGAAAAGTAGTAAAAAGGGGTTCTAATTATGATTAATAAAATTGATTTCAAAGCT
AAGAATCTAACATCAAATGCAGGTCTTTTTCTGCTCCTTGAGAATGCAAAAAGCAATGGGATTTTTGATT
TTATTGAAAATGACCTCGTATTTGATAATGACTCAACAAATAAAATCAAGATGAATCATATAAAGACCAT
GCTCTGCGGTCACTTCATTGGCATTGATAAGTTAGAACGTCTAAAGCTACTTCAAAATGATCCCCTCGTC
AACGAGTTTGATATTTCCGTAAAAGAACCTGAAACAGTGTCACGGTTTCTAGGAAACTTCAACTTCAAGA
CAACCCAAATGTTTAGAGACATTAATTTTAAAGTCTTTAAAAAACTGCTCACTAAAAGTAAATTGACATC
CATTACGATTGATATTGATAGTAGTGTAATTAACGTAGAAGGTCATCAAGAAGGTGCGTCAAAAGGATAT
AATCCTAAGAAACTGGGAAACCGATGCTACAATATCCAATTTGCATTTTGCGACGAATTAAAAGCATATG
TTACCGGATTTGTAAGAAGTGGCAATACTTACACTGCAAACGGTGCTGCGGAAATGATCAAAGAAATTGT
TGCTAACATCAAATCAGACGATTTAGAAATTTTATTTCGAATGGATAGTGGCTACTTTGATGAAAAAATT
ATCGAAACGATAGAATCTCTTGGATGCAAATATTTAATTAAAGCCAAAAGTTATTCTACACTCACCTCAC
AAGCAACGAATTCATCAATTGTATTCGTTAAAGGAGAAGAAGGTAGAGAAACTACAGAACTGTATACAAA
ATTAGTTAAATGGGAAAAAGACAGAAGATTTGTCGTATCTCGCGTACTGAAACCAGAAAAAGAAAGAGCA
CAATTATCACTTTTAGAAGGTTCCGAATACGACTACTTTTTCTTTGTAACAAATACTACCTTGCTTTCTG
AAAAAGTAGTTATATACTATGAAAAGCGTGGTAATGCTGAAAACTATATCAAAGAAGCCAAATACGACAT
GGCGGTGGGTCATCTCTTGCTAAAGTCATTTTGGGCGAATGAAGCCGTGTTTCAAATGATGATGCTTTCA
TATAACCTATTTTTGTTGTTCAAGTTTGATTCCTTGGACTCTTCAGAATACAGACAGCAAATAAAGACCT
TTCGTTTGAAGTATGTATTTCTTGCAGCAAAAATAATCAAAACCGCAAGATATGTAATCATGAAGTTGTC
GGAAAACTATCCGTACAAGGGAGTGTATGAAAAATGTCTGGTATAATAAGAATATCATCAATAAAATTGA
GTGTTGCTCTGTGGATAACTTGCAGAGTTTATTAAGTATCATTGCAGCAAAGATGAAATCAATGATTTAT
CAAAAATGATTGAAAGGTGGTTGTAAATAATGTTACAATGTGTGAGAAGCAGTCTAAATTCTTCGTGAAA
TAGTGATTTTTGAAGCTAATAAAAAACACACGTGGAATTTAGGGACTATTCATGTTGTTGTTATTTCGTA
TCTTCCAGAATAAGGAATCCCATGGTTAAAAAATCACTGCGCCAGTTCACGCTGATGGCGACGGCAACCG
TCACGCTGTTGTTAGGAAGTGTGCCGCTGTATGCGCAAACGGCGGACGTACAGCAAAAACTTGCCGAATT
AGAGCGGCAGTCGGGAGGCAGACTGGGTGTGGCATTGATTAACACAGCAGATAATTCGCAAATACTTTAT
CGTGCTGATGAGCGCTTTGCGATGTGCAGCACCAGTAAAGTGATGGCCGCGGCCGCGGTGCTGAAGAAAA
GTGAAAGCGAACCGAATCTGTTAAATCAGCGAGTTGAGATCAAAAAATCTGACCTTGTTAACTATAATCC
GATTGCGGAAAAGCACGTCAATGGGACGATGTCACTGGCTGAGCTTAGCGCGGCCGCGCTACAGTACAGC
GATAACGTGGCGATGAATAAGCTGATTGCTCACGTTGGCGGCCCGGCTAGCGTCACCGCGTTCGCCCGAC
AGCTGGGAGACGAAACGTTCCGTCTCGACCGTACCGAGCCGACGTTAAACACCGCCATTCCGGGCGATCC
GCGTGATACCACTTCACCTCGGGCAATGGCGCAAACTCTGCGGAATCTGACGCTGGGTAAAGCATTGGGC
GACAGCCAACGGGCGCAGCTGGTGACATGGATGAAAGGCAATACCACCGGTGCAGCGAGCATTCAGGCTG
GACTGCCTGCTTCCTGGGTTGTGGGGGATAAAACCGGCAGCGGTGGCTATGGCACCACCAACGATATCGC
GGTGATCTGGCCAAAAGATCGTGCGCCGCTGATTCTGGTCACTTACTTCACCCAGCCTCAACCTAAGGCA
GAAAGCCGTCGCGATGTATTAGCGTCGGCGGCTAAAATCGTCACCGACGGTTTGTAA

Region DNA

>2	 27930-36691
ATTCCTTCCGGCGTCCGGCATTTTACCGCCAGACAGCTCGGGATTCGTGATATCACCGTTCTTGCAGAAT
ACGGTCAGAGGGAAAATACCCGCCGTGAGCATGCAGCGCTGATACGTCAGCACTATCAGTATCGTGAATT
TGCCTGGCCCTGGACATTTCGCCTTACCCGTCTTTTATATACCCGGAGCTGGATAAGCAACGAACGTCCT
GGCCTGCTTTTCGATCTGGCGACAGGGTGGCTTATGCAACATCGTATTATTCTCCCCGGAGCCACTACGC
TGACCCGGTTGATTTCAGAGGTAAGGGAAAAGGCGACGTTGCGCCTGTGGAACAAACTGGCACTGATACC
GTCAGCCGAACAGCGTTCACAGCTGGAGATGCTGCTGGGGCCAACTGATTGCAGCCGCCTGTCTTTACTG
GAATCACTGAAAAAGGGCCCTGTGACCATCAGTGGTCCGGCGTTTAATGAAGCAATTGAACGCTGGAAAA
CTCTGAACGATTTTGGCCTGCATGCTGAAAACCTGAGTACACTCCCGGCTGTGCGCCTGAAAAATCTCGC
ACGTTATGCTGGTATGACTTCGGTGTTCAATATTGCCAGGATGTCACCGCAGAAAAGGATGGCGGTTCTG
GTTGCCTTTGTCCTTGCATGGGAAACGCTGGCGCTGGATGATGCATTGGACGTTCTGGACGCCATGCTGG
CCGTTATCATCCGTGACGCCAGAAAGATTGGGCAGAAAAAACGGCTCCGCTCGCTGAAGGATCTGGATAA
ATCTGCATTGGCGCTCGCCAGCGCATGTTCGTACCTGCTGAAAGAAGAAACACCGGACGAATCGATTCGT
GCTGAGGTGTTCAGCTACATCCCAAGGCAAAAGCTGGCTGAAATCATCACGCTTGTCCGTGAAATTGCCC
GGCCCTCAGACGATAATTTTCATGAAGAAATGGTGGAGCAGTACGGGCGCGTTCGTCGTTTCCTGCCCCA
TCTGCTGAATACCGTTAAATTTTCATCCGCACCTGCCGGGGTTACCACTCTGAATGCCTGTGACTACCTC
AGCCGGGAGTTCAGCTCACGGCGGCAGTTTTTTGACGACGCACCAACGGAAATTATCAGTCGGTCATGGA
AACGGCTGGTGATTAACAAGGAAAAACATATCACCCGCAGGGGATACACGCTCTGCTTTCTCAGTAAACT
GCAGGATAGTCTGAGGCGGAGGGATGTCTACGTTACCGGCAGTAACCGGTGGGGAGATCCTCGTGCAAGA
TTACTACAGGGTGCTGACTGGCAGGCAAACCGGATTAAGGTTTATCGTTCTTTGGGGCACCCGACAGACC
CGCAGGAAGCAATAAAATCTCTGGGTCATCAGCTTGATAGTCGTTACAGACAGGTTGCTGCACGTCTTTG
CGAAAATGAGGCTGTCGAACTCGATGTTTCTGGCCCGAAGCCCCGGTTGACAATTTCTCCCCTCGCCAGT
CTTGATGAGCCGGACAGTCTGAAACGACTGAGCAAAATGATCAGTGATCTACTCCCTCCGGTGGATTTAA
CGGAGTTGCTGCTCGAAATTAACGCCCATACCGGATTTGCTGATGAGTTTTTCCATGCTAGTGAAGCCAG
TGCCAGAGTTGATGATCTGCCCGTCAGCATCAGCGCCGTGCTGATGGCTGAAGCCTGCAATATCGGTCTG
GAACCACTGATCAGATCAAATGTTCCTGCACTGACCCGACACCGGCTGAACTGGACAAAAGCGAACTATC
TGCGGGCTGAAACTATCACCAGCGCTAATGCCAGACTGGTTGATTTTCAGGCAACGCTGCCACTGGCACA
GATATGGGGTGGAGGAGAAGTGGCATCTGCAGATGGAATGCGCTTTGTTACGCCAGTCAGAACAATCAAT
GCCGGACCGAACCGCAAATACTTTGGTAATAACAGAGGGATCACCTGGTACAACTTTGTGTCCGATCAGT
ATTCCGGCTTTCATGGCATCGTTATACCGGGGACGCTGAGGGACTCTATCTTTGTGCTGGAAGGTCTTCT
GGAACAGGAGACCGGGCTGAATCCAACCGAAATTATGACCGATACAGCAGGTGCCAGCGAACTTGTCTTT
GGCCTTTTCTGGCTGCTGGGATACCAGTTTTCTCCACGCCTGGCTGATGCCGGTGCTTCGGTTTTCTGGC
GAATGGACCATGATGCCGACTATGGCGTGCTGAATGATATTGCCAGAGGGCAATCAGATCCCCGAAAAAT
AGTCCTTCAGTGGGACGAAATGATCCGGACCGCTGGCTCCCTGAAGCTGGGCAAAGTACAGGTTTCAGTG
CTGGTCCGTTCATTGCTGAAAAGTGAACGTCCTTCCGGACTGACTCAGGCAATCATTGAAGTGGGGCGCA
TCAACAAAACGCTGTATCTGCTTAATTATATTGATGATGAAGATTACCGCCGGCGCATTCTGACCCAGCT
TAATCGGGGAGAAAGTCGCCATGCCGTTGCCAGAGCCATCTGTCACGGTCAAAAAGGTGAGATAAGAAAA
CGATATACCGACGGTCAGGAAGATCAACTGGGCACACTGGGGCTGGTCACTAACGCCGTCGTGTTATGGA
ACACTATTTATATGCAGGCAGCCCTGGATCATCTCCGGGCGCAGGGTGAAACACTGAATGATGAAGATAT
CGCACGCCTCTCCCCGCTTTGCCACGGACATATCAATATGCTCGGCCATTATTCCTTCACGCTGGCAGAA
CTGGTGACCAAAGGACATCTGAGACCATTAAAAGAGGCGTCAGAGGCAGAAAACGTTGCTTAACGTGAGT
TTTCGTTCCACTGAGCGTCAGACCCCTACTAGCGGCCCCAGGCAGCAGGTCGATGCAAGAATGGCGGCCA
GCCCGCCGGCGAAGAGCGCACCGCGCCCGTTTTGTGGTTCAGACATACGTTGGCCCTTTTGAATTTGGAT
TGGATAGCGTAACCTTACTTCCGTACTCATGTACGGAGTCAAGCGATATGGAAAATAATTTGGAAAACCT
GACCATTGGCGTTTTTGCCAAGGCGGCCGGGGTCAACGTGGAGACAATCCGCTTCTATCAGCGCAAGGGC
CTGTTGCGGGAACCGGACAAGCCTTACGGCAGCATCCGCCGCTATGGGGAGGCGGACGTGGTTCGGGTGA
AATTCGTGAAATCGGCACAGCGGCTGGGGTTCAGTCTGGACGAGATTGCCGAGCTGTTGCGGCTCGACGA
TGGCACCCACTGCGAGGAGGCCAGCAGCCTGGCCGAACACAAGCTCAAGGACGTGCGCGAGAAGATGGCC
GACTTGGCGCGCATGGAAACCGTGCTGTCTGAACTCGTGTGCGCCTGCCATGCACGAAAGGGGAATGTTT
CCTGCCCGTTGATCGCGTCACTACAGGGCGAAGCAGGCCTGGCAAGGTCAGCTATGCCTTAGCGTGCTTT
ATTTAATGAGATGGTCACTCCCTCCTTCCCGGTACTATGCTGAGGACAGGCTTTCATTCGGAGAACTATC
ATGGAAAACATTGCGCTCATTGGTATCGATCTGGGTAAAAACTCTTTCCATATTCATTGCCAGGATCGTC
GCGGGAAGGCTGTTTACCGTAAAAAATTTACCCGGCCAAAGTTGATCGAATTTTTGGCGACATGCCCCGC
TACAACCATCGCAATGGAAGCCTGTGGCGGTTCTCACTTTATGGCACGCAAGTTGGAAGAGTTGGGGCAT
TCCCCAAAGCTGATATCACCACAATTTGTCCGCCCGTTCGTTAAAAGCAATAAAAACGACTTTGTCGACG
CCGAAGCTATTTGTGAAGCTGCATCGCGTCCGTCTATGCGTTTTGTGCAGCCCAGAACGGAATCTCAGCA
GGCAATGCGGGCTCTGCATCGTGTCCGTGAATCCCTGGTTCAGGATAAGGTGAAAACAACCAATCAAATG
CATGCTTTTCTGCTGGAATTTGGCATTAGCGTTCCCCGAGGAGCTGCCGTTATTAGCCGACTGAGTACCA
TTCTTGAGGATAATAGTTTGCCTCTTTACCTCAGCCAGTTATTGCTGAAATTACAACAGCATTATCACTA
TCTTGTTGAGCAGATTAAAGATCTGGAATCCCAGTTGAAACGAAAGTTGGACGAAGATGAGGTTGGACAG
CGCTTGCTGAGCATTCCCTGCGTCGGAACACTGACAGCGAGTACTATTTCAACTGAGATTGGCGACGGGA
AGCAGTACGCCAGCAGCCGTGACTTTGCGGCGGCAACAGGGCTTGTACCTCGGCAGTACAGCACGGGAGG
TAGGACGACATTGCTGGGAATTAGTAAGCGAGGTAATAAAAAGATCCGAACTTTGTTGGTTCAGTGTGCC
AGGGTATTCATACAAAAACTGGAACACCAGTCTGGCAAATTGGCCGATTGGGTCAGGGATTTACTGTGCC
GGAAAAGCAACTTTGTCGTCACTTGTGCTCTGGCAAACAAGCTGGCCAGAATAGCCTGGGCCCTAACGGC
ACGACAGCAAACTTATGTAGCATAACGGCAGAAATACACCGGTTTAAAGAATTACTGATCTGGTTTTGCG
AATACTGATATTGATGATACTAACGGCCCACCGGCCTGTTGAGGAACCTGTAAAACGGAAAGGCTCATTG
AAGCCGTATATTTTCTGGAGGTTCATCAGGCGCGGAACTCATCAAGGCGCGGGAATAAAATCCCATTCAG
ACGCCGGATAGATTCAAGCAAGCCAACTTGTCGTCAAAATCGGTGTTGCAAAAACGGGAGTGACCATAGA
TTCCGTTTTCTGAGGTGCCCCCTAATAGTGTTCTTCCATTTCGGTAAAAATCCCTACCATGGATTCCCAC
TCGTCCGGGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC
ATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTC
AGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATT
CATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCC
CAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAA
AACAGCCAGCGCTGGCGCGATTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGA
CGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTG
TTGAGGCCAACGCCCATAATGCGGGCGGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTT
TCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCA
GAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGA
CAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCA
GCATCACCTAAAAACCGGAAATAACGCCAGAAATGGTGGAAAAAATAGCCTAAATAGGCTGATTCGATGT
GTTTGCGGGAAAAAAATCGGCCCAGATCCGCGAAATTTTAATCAGCGAGTCAGCTTGGGAAGAAATGACC
TGCTTATTCGCACCTTCCCTAGTTCATACCATGATATAAATCGAAACCATTCCCTATTATGTATAATGTC
AAAATTTTCCCCTTTAAGATTTTGGTTGTTGTTCTCAGTATGCTTAACTTAGTGTTTATATGAATTGCAA
GCATTGATAATACCTTACTTTATATCAATAGAGCCCACCATGTAAAACGTATGATGTTATCAACATGAGA
ATTATTCCTACCTTATCCCTAAATCAACTTGAACTGAAAAAAATCGCGGTGTATTAATCAACGGGGAGCA
GGTCATTTGTTCCACGGTGATGTGTTCATACTCAAATAGCCTGCAATGTGGGAGATTTGAGTATGGTTGT
CACTTATAAGCGATAAACCGCCATTAACTCCATGTTCAGCGGCTAGCAGATTGTAATGAAATGCTAAAGC
TTTTCTCCGTTAAATTTAAAAGCTTCGCTTCTTTTGATATCTCGCGACAATGATTCTAGCCCCGGATATA
TAAATGACTCCGTTATACCTAGAGCTTGCAAATCTTTAAGCATTTGGGGGATCACTTCATATGGTATAAA
TATTTTATGTATAATTTTACGAAGCTCATCGTAATAGTCTAATGCCCATATATTTGAACCATGTAATGTA
AAGTGGCCCGATTGTGATCTTATTCTCGTATCAATATGACTTGATTGGACTGCAATTGGAAGAAAATTAC
AACTACCTTCTTTATTCATTGGGTCGAAGTAATGACTCCATTTATCAGCTTCTTCACAAATATAAATTTT
TGATCGGTTTGAGACTGTTAAATAATTCAATTTTGATGGGCTTATGGCAAAAACAGCAGCTCCTTCCGAG
CAAAACTCATCGCTTTCCATAAAATTTTGCGAGGGCGATTCGTTGTAATGCCTCTCTTCGTCAGAGGTAG
GATTTGATTCGATAGCAAAAAATAACGCAACTAAGGCGTTTGTCGTCCAGTCTAACAGCCTGGTTGGTAC
ACCATAGTGCTGCATCAAGAACATCCACTCAAAATTATTTGAGGGCTCTCGATTCAAAAAAGGAACCGCT
CGAGACTTAAATTCATAAAACATATTTTCGGGACTAAGACCTGTTACATGACCGCCCTCTGAAAGTATCA
CCTGACCATTTTCGACCCTATTACCTCTGGCATCAGTTAAGGGAACGGTATCACGTAATACCGAGGGTAC
TAATCTATATGAAGCGCAAGCATGTCCTCTAAACCATATGTCATCGACTTCATTTACTATTTCTGTAACT
GTTGAAACATAATCTGCTAGCGAGTTTACGGCATACTTAAACATGATCATCTCCTCAATAGTATGACTAT
TCTAATACAAACTAAGTGGTGCAAGAAACGTGCGATGATTGAATGACTGACTAAATTATTTACGAACGGT
AGCACGCCTACGGCGTGAGCTCGTCTGCTGCGCAGCCGAAGTCCTTTCCACCTTCATCGACGCATTTTAT
ACTGTGCATCATGTAGGGGTTCTAGGGATTTTCCGTCCAAATGCGACATTCAGACTGCTAAGTGATTGAT
TTATTGTGACTGGCTATGTGAAGCGCCAAAAAAGTAATACCCCTCTGGAGGCCGCGGACGGCGTGGCCTC
CAGAGCACTTTGTCGTTTTTGGACGGAAAATCCCTAGAACCCCAATTTGGCCAGGTCGGCGGGTGTCATC
TGGCCGCCCTCGCGGGCAATCTTGAGCAGGCGGTTCTGGTGAACCAGCCGCTCGATGCCGGTAGGCAGAT
CGAGTGCCTGCCATGCCTTGAGGCGTTCGATGTGTTCCAGCATATGCCGCGAATTTGGCTTGGCCGGAGA
CTGGCGCAACCAAGCCAACCAGGTCGTCTTGCCGTTGTCCCGGCGCTTGAGCAGATCGTCGAGGCGGCGG
CGATGCGCGTCCGCCAGTGGTTCGGCCAAGGCGTCGTAGATGCGCCGGTTAGCACGGGTGATCGCCTCGG
CACTCGCCCGCTCGACGGCGTTGAGGGCGGGCAGAATGACCGACTGCCGCCGCAGGTGCCCGATCAAGGC
GCTGGCCAGCACGATGCCTTTGTCGGTTTGCATCGCCAGCTCGGTCAGCATCTGGACGGCCTGCCGGTAA
TGGCTCATGGTGAAGGGCCGGAAACCGAACACGGTTTGCAGCTCGCTCAGGTGCTCGCGCCGGGTCTGCT
CCCGCTGGCCGTACTCGTTCCAGCTTTCGACGCCGACCTTGAGCTGGTCGGCGACCAGCTTCAACAAGGG
CGGGAACGGTAGTTCATCGACGCCCAGGATGACGCCGGGAAAGCGCAGGTAACAGAGCTGCACCGCGAAG
CCCAGCCGATTGGCTGGCCCGCGCCGCTGTCGGATGATCGAGAGGTCGGTATCGTTGAATGTGTAATGTC
GGATCAGGTCGTCCTTGGAGTCCGGCAACGCCAGCAGGCTTTCCCGCTCGGCGGCGGACAGGATGGAACG
ACGTGGCATATTTACTGATCCGTTCTCAAGTATTGATACAGGGTTTCGCGACTGATTCCGAATTCACGAG
CAAGCTTGGTCTTTTGCTCGCCAGCCTCGACACGTTGGCGCAGTTCGGCAATACGCTCAGACGACAGGGA
TTTCTTCCTGCCACGGTAAGCCCCGCGTTGCTTGGCGAGCGCAATACCCTCGCGCTGACGCTCGCGGATC
AGGGCGCGCTCGAACTCGGCGAACGCGCCCATCACCGAGAGCATCAGGTTCGCCATCGGAGAGTCTTCGC
CAGTAAAACTGAGGTGTTCCTTGACGAATTCGATATGCACGCCGCGTTGTGTCAGCGTTTGCACGATCCG
GCGCAAATCATCGAGATTGCGCGCCAGGCGATCCATGCTATGCACCACCACGGTGTCGCCGGTGCGGGCG
AAGCTTATCAGCGCTTCCAGTTGCGGACGCTTGACATCCTTGCCGGATGCCTTGTCGCTAAAAGCGCGAT
CAACCTTGACGCCTTCCAGTTGCCGTTCCGGGTTCTGGTCGAAGGTGCTGACCCTGATATACCCAATGCG
CTGTCCAGTCAT

Intact (score > 90)

Questionable (score 70-90)

Incomplete (score < 70)

Region:	The number assigned to the region.
Region Length:	The length of the sequence of that region (in bp).
Completeness:	A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score:	The score of the region based on the above criteria.
# Total Proteins:	The number of ORFs present in the region.
Region Position:	The start and end positions of the region on the bacterial chromosome.
Most Common Phage:	The phage(s) with the highest number of proteins most similar to those in the region.
GC %:	The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.

Method 2:

If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).

Method 3:

If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
If the size of the region is greater than 30 Kb, the score will be increased by 10.
If there are at least 40 proteins in the region, the score will be increased by 10.
If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.

Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP020070.1| Klebsiella pneumoniae strain AR_0068 plasmid unitig_4, complete 37875, gc%: 52.26%

Download details as .txt file: detail.txt

Hits against Virus and Prophage Database

Hits against Bacterial Database or GenBank File

Region 1, total 12 CDS

#	CDS Position	BLAST Hit	E-Value	Sequence
1	19148..19423	PHAGE_Entero_P1_NC_005856: InsA; AM447_30610; phage(gi46401643)	2.42e-57	Show
2	19342..19845	PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AM447_30615; phage(gi557307573)	9.15e-106	Show
3	complement(19930..20790)	PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM447_30620; phage(gi100066)	5.20e-57	Show
4	complement(20973..21254)	PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; AM447_30625; phage(gi100061)	4.72e-07	Show
5	complement(21490..22314)	oxacillin-hydrolyzing class D beta-lactamase OXA-9; AM447_30630	0.0	Show
6	complement(22374..23162)	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1; AM447_30635	0.0	Show
7	complement(23232..23837)	PHAGE_Staphy_SPbeta_like_NC_029119: bifunctional AAC/APH; AM447_30640; phage(gi985761240)	4.80e-16	Show
8	complement(24020..24577)	PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM447_30645; phage(gi100036)	3.74e-27	Show
9	24741..24953	hypothetical protein; AM447_30650	0.0	Show
10	25141..26403	PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM447_30655; phage(gi100067)	3.19e-53	Show
11	26384..26506	hypothetical protein; AM447_30660	0.0	Show
12	26659..27534	PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM447_30665; phage(gi100066)	1.60e-170	Show

Region 2, total 11 CDS

#	CDS Position	BLAST Hit	E-Value	Sequence
1	27930..30722	PROPHAGE_Xantho_33913: Tn5041 transposase; AM447_30675; phage(gi21231545)	6.23e-31	Show
2	complement(30756..30845)	mercuric transport protein; AM447_30680	0.0	Show
3	30917..31351	mercuric resistance operon regulatory protein; AM447_30685	0.0	Show
4	31430..32434	PROPHAGE_Shewan_MR-1: IS110 family transposase; AM447_30690; phage(gi24375433)	1.70e-59	Show
5	complement(32785..33288)	PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AM447_30695; phage(gi557307573)	1.15e-118	Show
6	complement(33207..33482)	PHAGE_Entero_P1_NC_005856: InsA; AM447_30700; phage(gi46401643)	7.08e-63	Show
7	complement(33439..33537)	glycosyl transferase; AM447_30705	0.0	Show
8	complement(33579..33701)	ABC transporter; AM447_30710	0.0	Show
9	complement(34083..34973)	hypothetical protein; AM447_30715	0.0	Show
10	complement(35316..36128)	PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM447_30720; phage(gi100060)	5.18e-108	Show
11	complement(36131..36691)	PHAGE_Sodali_phiSG1_NC_007902: resolvase; AM447_30725; phage(gi89886020)	6.53e-33	Show

Click on a region to see details.

Intact (score > 90)

Questionable (score 70-90)

Incomplete (score < 70)

Viewer Options

Length: 37875 bps

Phages: 2

Click on a region in the genome above to show details here.

Click on a sequence to see details.

Lysis

Terminase

Portal Protein

Protease

Coat Protein

Tail Shaft

Attachment Site

Integrase

Phage-like Protein

Hypotheical Protein

Other

Transposase

Fiber Protein

Plate Protein

tRNA

Download data as .txt file: png_input

Region	1
Region Length	8.3Kb
Completeness(score)	incomplete(30)
Specific Keyword	transposase,head
Region Position	19148-27534
# tRNA	0
# Total Proteins	12
# Phage Hit Proteins	8
# Hypothetical Proteins	2
Phage + Hypothetical Protein %	83.3%
# Bacterial Proteins	2
Attachment Site	no
# Phage Species	4
Most Common Phage Name(hit genes count)	PHAGE_Salmon_SJ46_NC_031129(4) PHAGE_Entero_P1_NC_005856(2) PHAGE_Salisa_1_NC_017983(1) PHAGE_Erwini_ENT90_NC_019932(1) PHAGE_Sodali_phiSG1_NC_007902(1) PHAGE_Shigel_SfIV_NC_022749(1) PHAGE_Staphy_SPbeta_like_NC_029119(1) PHAGE_Entero_Mu_NC_000929(1) PHAGE_Escher_pro483_NC_028943(1)
First Most Common Phage #	5
First Most Common Phage %	33.33%
GC %	46.92%

Region:	The number assigned to the region.
Region Length:	The length of the sequence of that region (in bp).
Completeness:	A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Specific Keyword:	The specific phage-related keyword(s) found in protein name(s) in the region.
Region Position:	The start and end positions of the region on the bacterial chromosome.
# tRNA:	The number of tRNA genes present in the region.
# Total Proteins:	The number of ORFs present in the region.
# Phage Hit Proteins:	The number of proteins in the region with matches in the phage protein database.
# Hypothetical Proteins:	The number of hypothetical proteins in the region without a match in the database.
Phage + Hypothetical Protein %:	The combined percentage of phage proteins and hypothetical proteins in the region.
# Bacterial Proteins:	The number of proteins in the region with matches in the nrfilt database.
Attachment Site:	The putative phage attachment site.
# Phage Species:	The number of different phages that have similar proteins to those in the region.
Most Common Phage:	The phage(s) with the highest number of proteins most similar to those in the region.
First Most Common Phage #:	The highest number of proteins in a phage most similar to those in the region.
First Most Common Phage %:	The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins.
GC %:	The percentage of GC nucleotides of the region.

Region	2
Region Length	8.7Kb
Completeness(score)	incomplete(40)
Specific Keyword	transposase
Region Position	27930-36691
# tRNA	0
# Total Proteins	11
# Phage Hit Proteins	6
# Hypothetical Proteins	1
Phage + Hypothetical Protein %	63.6%
# Bacterial Proteins	4
Attachment Site	no
# Phage Species	6
Most Common Phage Name(hit genes count)	PHAGE_Entero_P1_NC_005856(2) PHAGE_Salmon_SJ46_NC_031129(2) PHAGE_Shigel_SfIV_NC_022749(1) PHAGE_Sodali_phiSG1_NC_007902(1) PHAGE_Vibrio_PWH3a_P1_NC_020863(1) PHAGE_Clostr_vB_CpeS_CP51_NC_021325(1)
First Most Common Phage #	1
First Most Common Phage %	18.18%
GC %	50.96%

Region:	The number assigned to the region.
Region Length:	The length of the sequence of that region (in bp).
Completeness:	A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Specific Keyword:	The specific phage-related keyword(s) found in protein name(s) in the region.
Region Position:	The start and end positions of the region on the bacterial chromosome.
# tRNA:	The number of tRNA genes present in the region.
# Total Proteins:	The number of ORFs present in the region.
# Phage Hit Proteins:	The number of proteins in the region with matches in the phage protein database.
# Hypothetical Proteins:	The number of hypothetical proteins in the region without a match in the database.
Phage + Hypothetical Protein %:	The combined percentage of phage proteins and hypothetical proteins in the region.
# Bacterial Proteins:	The number of proteins in the region with matches in the nrfilt database.
Attachment Site:	The putative phage attachment site.
# Phage Species:	The number of different phages that have similar proteins to those in the region.
Most Common Phage:	The phage(s) with the highest number of proteins most similar to those in the region.
First Most Common Phage #:	The highest number of proteins in a phage most similar to those in the region.
First Most Common Phage %:	The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins.
GC %:	The percentage of GC nucleotides of the region.