Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1163071799

GenInfo (GI) Number: 0000000000

Download Results: 1163071799.PHASTER.zip

gi|00000000|ref|CP020109.1| Klebsiella pneumoniae strain AR_0098 plasmid tig00000001, complete 169952, gc%: 52.70%

Download summary as .txt file: summary.txt file_download

Total: 3 prophage regions have been identified, of which 1 regions are intact, 1 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
134.1Kbincomplete303048605-82716 info_outlinePHAGE_Entero_P1_NC_005856(4)52.35%Show info_outline
228.5Kbquestionable7027123102-151694 info_outlinePHAGE_Entero_P1_NC_005856(2)55.93%Show info_outline
319.3Kbintact12025143658-163041 info_outlinePHAGE_Entero_P1_NC_005856(2)58.51%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP020109.1| Klebsiella pneumoniae strain AR_0098 plasmid tig00000001, complete 169952, gc%: 52.70%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 32 CDS

#CDS PositionBLAST HitE-ValueSequence
148605..48619attL0.0Showinfo_outline
252702..53868PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; AM477_28820; phage(gi46402111)0.0Showinfo_outline
353868..54839PHAGE_Yersin_PY54_NC_005069: partitioning protein SpyB; AM477_28825; phage(gi33770536)9.74e-114Showinfo_outline
454839..55801hypothetical protein; AM477_288300.0Showinfo_outline
5complement(55828..56062)hypothetical protein; AM477_288350.0Showinfo_outline
656276..57474PROPHAGE_Escher_Sakai: putative transposase; AM477_28840; phage(gi38704244)7.61e-64Showinfo_outline
7complement(57497..57712)plasmid stabilization protein; AM477_288450.0Showinfo_outline
8complement(57791..59062)PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; AM477_28850; phage(gi431811050)0.0Showinfo_outline
9complement(59062..59487)PHAGE_Cronob_ENT39118_NC_019934: protein umuD; AM477_28855; phage(gi431811072)6.78e-32Showinfo_outline
1059642..59893hypothetical protein; AM477_288600.0Showinfo_outline
1159893..61377PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; AM477_28865; phage(gi100001)1.95e-36Showinfo_outline
1261611..61841hypothetical protein; AM477_288700.0Showinfo_outline
1362362..62787PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; AM477_28875; phage(gi162135127)1.98e-14Showinfo_outline
1463024..63278PHAGE_Escher_HK639_NC_016158: DNA pol III theta; AM477_28880; phage(gi356870660)3.30e-22Showinfo_outline
1563313..63630hypothetical protein; AM477_288850.0Showinfo_outline
1663967..64308hypothetical protein; AM477_288900.0Showinfo_outline
1764412..64639hypothetical protein; AM477_288950.0Showinfo_outline
1864731..64961hypothetical protein; AM477_289000.0Showinfo_outline
1965013..66368hydrolase; AM477_289050.0Showinfo_outline
2066416..66979PHAGE_Thalas_BA3_NC_009990: hypothetical protein; AM477_28910; phage(gi160700596)2.33e-22Showinfo_outline
21complement(66990..67085)hypothetical protein; AM477_289150.0Showinfo_outline
2267352..67685single-stranded DNA-binding protein; AM477_289200.0Showinfo_outline
2367755..68297PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM477_28925; phage(gi100049)6.19e-64Showinfo_outline
2468346..68594transcriptional regulator; AM477_289300.0Showinfo_outline
2568664..70722PHAGE_Gordon_Hedwig_NC_031099: RNA polymerase binding protein; AM477_28935; phage(gi100054)4.77e-07Showinfo_outline
2670767..71198conjugation system SOS inhibitor PsiB; AM477_289400.0Showinfo_outline
2771195..71923plasmid SOS inhibition protein A; AM477_289450.0Showinfo_outline
2871920..72246PHAGE_Rhodob_RcapNL_NC_020489: hypothetical protein; AM477_28950; phage(gi461475014)2.91e-16Showinfo_outline
2972302..72676hypothetical protein; AM477_289550.0Showinfo_outline
30complement(72665..72847)hypothetical protein; AM477_289600.0Showinfo_outline
31complement(72854..73933)PHAGE_Spirop_SkV1_CR2_3x_NC_009987: hypothetical protein; AM477_28965; phage(gi160688404)1.08e-08Showinfo_outline
3282716..82730attR0.0Showinfo_outline

Region 2, total 29 CDS

#CDS PositionBLAST HitE-ValueSequence
1123102..123113attL0.0Showinfo_outline
2complement(123909..125021)PHAGE_Campyl_CP21_NC_019507: radical SAM domain-containing protein; AM477_29325; phage(gi422935302)3.17e-07Showinfo_outline
3complement(125014..126402)PHAGE_Erwini_vB_EamM_Asesino_NC_031107: chaperone for long tail fiber formation; AM477_29330; phage(gi100168)9.30e-05Showinfo_outline
4complement(126402..126632)His-Xaa-Ser system protein HxsD; AM477_293350.0Showinfo_outline
5complement(126634..127137)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AM477_29340; phage(gi557307573)1.15e-118Showinfo_outline
6complement(127056..127331)PHAGE_Entero_P1_NC_005856: InsA; AM477_29345; phage(gi46401643)7.08e-63Showinfo_outline
7complement(127288..127386)glycosyl transferase; AM477_293500.0Showinfo_outline
8complement(127365..127556)hypothetical protein; AM477_293550.0Showinfo_outline
9127610..128269PHAGE_Stx2_vB_EcoP_24B_NC_027984: Cat; AM477_29360; phage(gi937456276)3.11e-167Showinfo_outline
10complement(128470..128847)N-acetyltransferase; AM477_293650.0Showinfo_outline
11complement(128914..131880)PROPHAGE_Xantho_33913: Tn5041 transposase; AM477_29370; phage(gi21231545)8.67e-46Showinfo_outline
12complement(131883..132443)PHAGE_Sodali_phiSG1_NC_007902: resolvase; AM477_29375; phage(gi89886020)6.53e-33Showinfo_outline
13complement(132569..132919)transposase; AM477_293800.0Showinfo_outline
14132984..133163transcriptional regulator; AM477_293850.0Showinfo_outline
15complement(133122..134135)PHAGE_Mycoba_Butters_NC_021061: integrase; AM477_29390; phage(gi479336499)2.26e-12Showinfo_outline
16134280..134777PHAGE_Bacill_Bp8p_C_NC_029121: putative dihydrofolate reductase; AM477_29395; phage(gi985761486)1.16e-33Showinfo_outline
17134889..135012hypothetical protein; AM477_294000.0Showinfo_outline
18complement(135026..135139)hypothetical protein; AM477_294050.0Showinfo_outline
19135185..135976ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2; AM477_294100.0Showinfo_outline
20136140..136487PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; AM477_29415; phage(gi311992758)9.11e-09Showinfo_outline
21136481..137320sulfonamide-resistant dihydropteroate synthase Sul1; AM477_294200.0Showinfo_outline
22complement(137250..137429)hypothetical protein; AM477_294250.0Showinfo_outline
23137448..137651hypothetical protein; AM477_294300.0Showinfo_outline
24137807..139012chromate transporter; AM477_294350.0Showinfo_outline
25139023..139328PadR family transcriptional regulator; AM477_294400.0Showinfo_outline
26complement(139344..139526)resolvase; AM477_294450.0Showinfo_outline
27139494..139589resolvase; AM477_294500.0Showinfo_outline
28139555..140319PROPHAGE_Brucel_1330: transposase, putative; AM477_29455; phage(gi23502708)3.18e-55Showinfo_outline
29151694..151705attR0.0Showinfo_outline

Region 3, total 27 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(143658..144362)PROPHAGE_Brucel_1330: transposase, putative; AM477_29480; phage(gi23502708)1.98e-53Showinfo_outline
2144412..144425attL0.0Showinfo_outline
3144425..145618PROPHAGE_Xantho_33913: Tn5041 transposase; AM477_29485; phage(gi21231545)8.42e-38Showinfo_outline
4145666..146334PROPHAGE_Brucel_1330: transposase, putative; AM477_29490; phage(gi23502708)1.01e-48Showinfo_outline
5146373..146386attR0.0Showinfo_outline
6complement(146540..146848)PROPHAGE_Xantho_33913: IS1479 transposase; AM477_29495; phage(gi21229605)1.38e-36Showinfo_outline
7147190..148017PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; AM477_29500; phage(gi371496158)1.94e-26Showinfo_outline
8148014..148877phosphate ABC transporter substrate-binding protein; AM477_295050.0Showinfo_outline
9148886..149713phosphonate ABC transporter, permease protein PhnE; AM477_295100.0Showinfo_outline
10149722..150732phosphonate dehydrogenase; AM477_295150.0Showinfo_outline
11150726..151595LysR family transcriptional regulator; AM477_295200.0Showinfo_outline
12151703..152234PROPHAGE_Xantho_33913: IS1479 transposase; AM477_29525; phage(gi21229605)3.26e-45Showinfo_outline
13complement(152301..152627)hypothetical protein; AM477_295300.0Showinfo_outline
14152679..152765ABC transporter; AM477_295350.0Showinfo_outline
15complement(152804..153784)PHAGE_Bacill_BMBtpLA_NC_028748: IS5 transposase and trans-activator; AM477_29540; phage(gi971482498)0.0Showinfo_outline
16complement(154043..154546)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AM477_29545; phage(gi557307573)1.61e-114Showinfo_outline
17complement(154465..154740)PHAGE_Entero_P1_NC_005856: InsA; AM477_29550; phage(gi46401643)1.21e-59Showinfo_outline
18complement(154925..155671)transposase; AM477_295550.0Showinfo_outline
19155771..156052PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; AM477_29560; phage(gi22855124)1.91e-06Showinfo_outline
20156087..156656PHAGE_Cyanop_P_RSM1_NC_021071: heat shock protein; AM477_29565; phage(gi481019345)7.81e-08Showinfo_outline
21156771..159566PROPHAGE_Escher_EDL933: ATP-dependent Clp protease ATP-binding subunit; AM477_29570; phage(gi15800640)1.10e-161Showinfo_outline
22159566..159763hypothetical protein; AM477_295750.0Showinfo_outline
23159813..159929diguanylate cyclase; AM477_295800.0Showinfo_outline
24160001..160750diguanylate cyclase; AM477_295850.0Showinfo_outline
25160737..161699Zn-dependent protease; AM477_295900.0Showinfo_outline
26161840..162319hypothetical protein; AM477_295950.0Showinfo_outline
27162316..163041PROPHAGE_Ralsto_GMI1000: isrso11-transposase orfb protein; AM477_29600; phage(gi17546155)2.74e-59Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 169952 bps
Phages: 3
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download