Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1163072007

GenInfo (GI) Number: 0000000000

Download Results: 1163072007.PHASTER.zip

gi|00000000|ref|CP020110.1| Klebsiella pneumoniae strain AR_0098 plasmid tig00000002, complete 73467, gc%: 54.73%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
119.9Kbintact120206247-26235 info_outlinePHAGE_Salmon_SJ46_NC_031129(4)55.70%Show info_outline
225.5Kbquestionable703645523-71083 info_outlinePHAGE_Salmon_SJ46_NC_031129(8)53.78%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP020110.1| Klebsiella pneumoniae strain AR_0098 plasmid tig00000002, complete 73467, gc%: 54.73%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 20 CDS

#CDS PositionBLAST HitE-ValueSequence
16247..7515PROPHAGE_Brucel_1330: transposase, putative; AM477_29730; phage(gi23501616)1.01e-33Showinfo_outline
27562..7972PROPHAGE_Brucel_1330: transposase, putative; AM477_29735; phage(gi23502708)7.58e-38Showinfo_outline
3complement(8083..8943)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM477_29740; phage(gi100066)5.20e-57Showinfo_outline
4complement(9126..9407)PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; AM477_29745; phage(gi100061)4.72e-07Showinfo_outline
5complement(9643..10467)class D beta-lactamase; AM477_297500.0Showinfo_outline
610625..10741AraC family transcriptional regulator; AM477_297550.0Showinfo_outline
7complement(10687..11391)PROPHAGE_Brucel_1330: transposase, putative; AM477_29760; phage(gi23502708)1.98e-53Showinfo_outline
811382..11465replication initiator protein; AM477_297650.0Showinfo_outline
911464..14361PROPHAGE_Xantho_33913: Tn5041 transposase; AM477_29770; phage(gi21231545)3.33e-34Showinfo_outline
1014450..15070PHAGE_Clostr_phiCD27_NC_011398: putative phage site-specific recombinase; AM477_29775; phage(gi209901279)3.94e-07Showinfo_outline
1115196..15579hypothetical protein; AM477_297800.0Showinfo_outline
12complement(16236..16595)DUF305 domain-containing protein; AM477_297850.0Showinfo_outline
13complement(16767..16997)PHAGE_Entero_HK022_NC_002166: IS903 transposase; AM477_29790; phage(gi9634149)1.04e-14Showinfo_outline
1417099..18283PROPHAGE_Shewan_MR-1: transposase, putative; AM477_29795; phage(gi24373689)2.31e-142Showinfo_outline
1518560..19879PHAGE_Staphy_phiPV83_NC_002486: transposase; AM477_29800; phage(gi9635722)7.29e-29Showinfo_outline
16complement(20129..21010)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM477_29805; phage(gi100066)2.88e-94Showinfo_outline
17complement(21062..21301)hypothetical protein; AM477_298100.0Showinfo_outline
18complement(21298..22077)PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; AM477_29815; phage(gi557307613)8.13e-78Showinfo_outline
19complement(22074..23099)PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; AM477_29820; phage(gi557307612)2.30e-44Showinfo_outline
20complement(23206..26235)PROPHAGE_Xantho_306: Tn5044 transposase; AM477_29825; phage(gi21243163)0.0Showinfo_outline

Region 2, total 36 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(45523..46365)PHAGE_Mycoba_Bactobuster_NC_031279: prohead core protein protease; AM477_29960; phage(gi100061)3.91e-07Showinfo_outline
246532..47545PHAGE_Mycoba_Shipwreck_NC_031261: hypothetical protein; AM477_29965; phage(gi100032)1.61e-11Showinfo_outline
3complement(47504..47683)transcriptional regulator; AM477_299700.0Showinfo_outline
447748..48098transposase; AM477_299750.0Showinfo_outline
5complement(48118..48285)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM477_29980; phage(gi100062)4.93e-33Showinfo_outline
648274..48834PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; AM477_29985; phage(gi100061)3.52e-83Showinfo_outline
748838..51804PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM477_29990; phage(gi100060)0.0Showinfo_outline
8complement(51837..52070)PHAGE_Salmon_SJ46_NC_031129: sigma factor for late transcription; AM477_29995; phage(gi100065)7.79e-49Showinfo_outline
952652..53038hypothetical protein; AM477_300000.0Showinfo_outline
10complement(53178..54146)PHAGE_Salmon_SJ46_NC_031129: sigma factor for late transcription; AM477_30005; phage(gi100065)0.0Showinfo_outline
1154382..54459hypothetical protein; AM477_300100.0Showinfo_outline
12complement(54459..54758)hypothetical protein; AM477_300150.0Showinfo_outline
13complement(54982..55461)hypothetical protein; AM477_300200.0Showinfo_outline
14complement(55549..55857)PHAGE_Burkho_KS14_NC_015273: gp37; AM477_30025; phage(gi327198306)3.26e-08Showinfo_outline
15complement(55867..56370)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; AM477_30030; phage(gi557307573)4.57e-109Showinfo_outline
16complement(56289..56564)PHAGE_Entero_P1_NC_005856: InsA; AM477_30035; phage(gi46401643)1.90e-60Showinfo_outline
17complement(56598..56723)hypothetical protein; AM477_300400.0Showinfo_outline
18complement(56716..58200)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; AM477_30045; phage(gi100001)1.95e-36Showinfo_outline
19complement(58200..58451)hypothetical protein; AM477_300500.0Showinfo_outline
20complement(58516..58631)hypothetical protein; AM477_300550.0Showinfo_outline
2158609..59040PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM477_30060; phage(gi100082)1.71e-23Showinfo_outline
2259040..60311PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; AM477_30065; phage(gi431811050)0.0Showinfo_outline
23complement(60393..61367)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM477_30070; phage(gi100010)3.81e-115Showinfo_outline
24complement(61367..62572)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM477_30075; phage(gi100009)0.0Showinfo_outline
2562987..63256hypothetical protein; AM477_300800.0Showinfo_outline
26complement(63433..64155)PHAGE_Burkho_KS14_NC_015273: gp37; AM477_30085; phage(gi327198306)1.47e-17Showinfo_outline
27complement(64164..64531)hypothetical protein; AM477_300900.0Showinfo_outline
2864829..64933hypothetical protein; AM477_300950.0Showinfo_outline
2965029..65190hypothetical protein; AM477_301000.0Showinfo_outline
30complement(65291..65461)serine hydrolase; AM477_301050.0Showinfo_outline
3165451..65570transposase; AM477_301100.0Showinfo_outline
32complement(65516..66220)PROPHAGE_Brucel_1330: transposase, putative; AM477_30115; phage(gi23502708)1.98e-53Showinfo_outline
33complement(66232..66489)aminoglycoside resistance protein; AM477_301200.0Showinfo_outline
34complement(66571..67176)PHAGE_Staphy_SPbeta_like_NC_029119: bifunctional AAC/APH; AM477_30125; phage(gi985761240)4.80e-16Showinfo_outline
35complement(67359..67916)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM477_30130; phage(gi100036)3.74e-27Showinfo_outline
3668078..71083PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM477_30135; phage(gi100060)1.39e-131Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 73467 bps
Phages: 2
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Click on a sequence to see details.
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download