Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1172788176

GenInfo (GI) Number: 0000000000

Download Results: 1172788176.PHASTER.zip

gi|00000000|ref|KY270849.1| Klebsiella pneumoniae strain 0716 plasmid p0716-KPC, complete 143538, gc%: 54.25%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
134.2Kbquestionable8035105205-139476 info_outlinePHAGE_Entero_P1_NC_005856(4)54.91%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|KY270849.1| Klebsiella pneumoniae strain 0716 plasmid p0716-KPC, complete 143538, gc%: 54.25%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 39 CDS

#CDS PositionBLAST HitE-ValueSequence
1105205..105218attL0.0Showinfo_outline
2complement(105257..105961)PROPHAGE_Brucel_1330: transposase, putative; -; phage(gi23502708)1.98e-53Showinfo_outline
3107139..107534Hypothetical protein; -0.0Showinfo_outline
4107518..107796Hypothetical protein; -0.0Showinfo_outline
5107907..108332PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; -; phage(gi162135127)1.17e-25Showinfo_outline
6108661..108957Transcriptional repressor protein KorC; -0.0Showinfo_outline
7109584..109595attL0.0Showinfo_outline
8complement(110192..111073)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; -; phage(gi100066)2.88e-94Showinfo_outline
9complement(111805..112509)PROPHAGE_Brucel_1330: transposase, putative; -; phage(gi23502708)1.98e-53Showinfo_outline
10complement(112965..113528)Heat shock protein C; -0.0Showinfo_outline
11complement(113650..114192)Hypothetical protein; -0.0Showinfo_outline
12complement(114174..115154)PHAGE_Bacill_BMBtpLA_NC_028748: IS5 transposase and trans-activator; -; phage(gi971482498)0.0Showinfo_outline
13115208..115615PHAGE_Vibrio_vB_VpaM_MAR_NC_019722: putative exonuclease; -; phage(gi428782757)3.70e-16Showinfo_outline
14115668..116063Hypothetical protein; -0.0Showinfo_outline
15116060..116671Hypothetical protein; -0.0Showinfo_outline
16complement(116668..117618)PHAGE_Sodali_phiSG1_NC_007902: transposase; -; phage(gi89886005)6.94e-115Showinfo_outline
17complement(118019..118651)PHAGE_Staphy_StB27_NC_019914: integrase; -; phage(gi431809677)1.12e-05Showinfo_outline
18119077..120219PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; -; phage(gi100009)3.08e-170Showinfo_outline
19120216..121187PHAGE_Entero_P1_NC_005856: ParB; -; phage(gi46401681)7.48e-73Showinfo_outline
20complement(121323..122594)PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; DNA; phage polymerase activity; -(gi431811050)0.0Showinfo_outline
21complement(122594..123016)PHAGE_Cronob_ENT39118_NC_019934: protein umuD; RecA-activated; phage auto-protease; -(gi431811072)5.57e-28Showinfo_outline
22complement(123196..123867)PHAGE_Pseudo_F116_NC_006552: hypothetical protein; -; phage(gi56692976)8.96e-49Showinfo_outline
23complement(123971..124096)Hypothetical protein; -0.0Showinfo_outline
24124226..124903PHAGE_Staphy_Stau2_NC_030933: hypothetical protein; -; phage(gi100063)6.14e-28Showinfo_outline
25124903..125124PHAGE_Entero_N15_NC_001901: gp50; -; phage(gi9630517)2.37e-05Showinfo_outline
26125135..125554Protein YubF; -0.0Showinfo_outline
27125608..126387Protein YubG; -0.0Showinfo_outline
28126792..127298PHAGE_Rhodoc_RGL3_NC_016650: antirestriction protein; -; phage(gi372449791)4.18e-10Showinfo_outline
29127341..127532Hypothetical protein; -0.0Showinfo_outline
30127535..127771Hypothetical protein; -0.0Showinfo_outline
31127725..127979PHAGE_Escher_HK639_NC_016158: DNA pol III theta; -; phage(gi356870660)7.22e-24Showinfo_outline
32128014..128166Hypothetical protein; -0.0Showinfo_outline
33128206..128331Hypothetical protein; -0.0Showinfo_outline
34complement(128370..128783)Hypothetical protein; -0.0Showinfo_outline
35complement(128737..128886)Hypothetical protein; -0.0Showinfo_outline
36128957..129187Protein YubL; -0.0Showinfo_outline
37129258..129920PHAGE_Gordon_Schwabeltier_NC_031255: RNA polymerase binding protein; -; phage(gi100054)2.96e-05Showinfo_outline
38134245..134256attR0.0Showinfo_outline
39139476..139489attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 143538 bps
Phages: 1
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Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download