Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1172788362

GenInfo (GI) Number: 0000000000

Download Results: 1172788362.PHASTER.zip

gi|00000000|ref|KY270850.1| Klebsiella pneumoniae strain 12181 plasmid p12181-KPC, complete 140093, gc%: 54.56%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
124.7Kbincomplete402762517-87274 info_outlinePHAGE_Entero_P1_NC_005856(4)54.39%Show info_outline
237.1Kbquestionable903898864-136031 info_outlinePHAGE_Entero_P1_NC_005856(4)55.83%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|KY270850.1| Klebsiella pneumoniae strain 12181 plasmid p12181-KPC, complete 140093, gc%: 54.56%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 29 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(62517..62675)PHAGE_Entero_933W_NC_000924: host killer protein; -; phage(gi9632541)2.78e-08Showinfo_outline
2complement(62903..63277)Hypothetical protein; -0.0Showinfo_outline
3complement(63333..63509)PHAGE_Rhodob_RcapNL_NC_020489: hypothetical protein; -; phage(gi461475014)1.46e-08Showinfo_outline
4complement(63656..64384)Plasmid SOS inhibition protein A; -0.0Showinfo_outline
5complement(64381..64812)Plasmid SOS inhibition protein B; -0.0Showinfo_outline
6complement(64857..66914)PHAGE_Gordon_Hedwig_NC_031099: RNA polymerase binding protein; -; phage(gi100054)8.73e-07Showinfo_outline
765255..65269attL0.0Showinfo_outline
8complement(66984..67232)Hypothetical protein; -0.0Showinfo_outline
9complement(67281..67823)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; -; phage(gi100049)3.15e-63Showinfo_outline
10complement(68515..68835)Hypothetical protein; -0.0Showinfo_outline
11complement(68870..69124)PHAGE_Escher_HK639_NC_016158: DNA pol III theta; -; phage(gi356870660)2.03e-23Showinfo_outline
12complement(69312..69503)Hypothetical protein; -0.0Showinfo_outline
13complement(69546..70052)PHAGE_Rhodoc_CosmicSans_NC_028677: ArdA; -; phage(gi966199624)1.84e-12Showinfo_outline
14complement(70095..70523)PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; -; phage(gi162135127)1.06e-13Showinfo_outline
15complement(71204..71971)Hypothetical protein; -0.0Showinfo_outline
16complement(72025..72444)Hypothetical protein; -0.0Showinfo_outline
17complement(72454..72675)PHAGE_Entero_N15_NC_001901: gp50; -; phage(gi9630517)6.40e-06Showinfo_outline
18complement(72675..73304)PHAGE_Staphy_Stau2_NC_030933: hypothetical protein; -; phage(gi100063)2.54e-21Showinfo_outline
19complement(73813..74043)Hypothetical protein; -0.0Showinfo_outline
20complement(74107..74778)Mediator of plasmid stability; -0.0Showinfo_outline
21complement(74781..75752)PHAGE_Entero_P88_NC_026014: recombinase; -; phage(gi744692717)2.61e-76Showinfo_outline
22complement(76001..77488)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; -; phage(gi100001)2.31e-36Showinfo_outline
2377896..78327PHAGE_Cronob_ENT39118_NC_019934: protein umuD; RecA-activated; phage auto-protease; -(gi431811072)5.10e-34Showinfo_outline
2478327..79598PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; DNA; phage polymerase activity; -(gi431811050)0.0Showinfo_outline
2580010..80885PHAGE_Entero_P1_NC_005856: RepA; -; phage(gi46401683)1.41e-109Showinfo_outline
2681550..82176PHAGE_Sodali_phiSG1_NC_007902: ParA-like protein; -; phage(gi89886027)1.10e-30Showinfo_outline
2782173..82475Hypothetical protein; -0.0Showinfo_outline
28complement(82931..83725)PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; -; phage(gi764159894)5.35e-07Showinfo_outline
2987274..87288attR0.0Showinfo_outline

Region 2, total 42 CDS

#CDS PositionBLAST HitE-ValueSequence
198864..98877attL0.0Showinfo_outline
2complement(100106..101119)PHAGE_Mycoba_Butters_NC_021061: integrase; -; phage(gi479336499)2.05e-12Showinfo_outline
3101275..101748PHAGE_Bacill_Blue_NC_031056: hypothetical protein; -; phage(gi100007)7.36e-26Showinfo_outline
4102273..103112Dihydropteroate synthase; -0.0Showinfo_outline
5103302..103313attL0.0Showinfo_outline
6103763..104050Hypothetical protein; -0.0Showinfo_outline
7104246..105010PROPHAGE_Brucel_1330: transposase, putative; -; phage(gi23502708)3.18e-55Showinfo_outline
8105176..105415Hypothetical protein; -0.0Showinfo_outline
9complement(105503..106087)Hypothetical protein; -0.0Showinfo_outline
10complement(106087..107325)Positive regulator; -0.0Showinfo_outline
11complement(107322..108227)Macrolide phosphotransferase/macrolide resistance; -0.0Showinfo_outline
12complement(108349..109053)PROPHAGE_Brucel_1330: transposase, putative; -; phage(gi23502708)1.98e-53Showinfo_outline
13complement(109522..110085)Heat shock protein C; -0.0Showinfo_outline
14complement(110207..110749)Hypothetical protein; -0.0Showinfo_outline
15complement(110731..111711)PHAGE_Bacill_BMBtpLA_NC_028748: IS5 transposase and trans-activator; -; phage(gi971482498)0.0Showinfo_outline
16111765..112172PHAGE_Vibrio_vB_VpaM_MAR_NC_019722: putative exonuclease; -; phage(gi428782757)3.70e-16Showinfo_outline
17112225..112620Hypothetical protein; -0.0Showinfo_outline
18112617..113228Hypothetical protein; -0.0Showinfo_outline
19complement(113225..114175)PHAGE_Sodali_phiSG1_NC_007902: transposase; -; phage(gi89886005)6.94e-115Showinfo_outline
20complement(114576..115208)PHAGE_Staphy_StB27_NC_019914: integrase; -; phage(gi431809677)1.12e-05Showinfo_outline
21115634..116776PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; -; phage(gi100009)3.08e-170Showinfo_outline
22116773..117744PHAGE_Entero_P1_NC_005856: ParB; -; phage(gi46401681)7.48e-73Showinfo_outline
23complement(117880..119151)PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; DNA; phage polymerase activity; -(gi431811050)0.0Showinfo_outline
24complement(119151..119573)PHAGE_Cronob_ENT39118_NC_019934: protein umuD; RecA-activated; phage auto-protease; -(gi431811072)5.57e-28Showinfo_outline
25complement(119753..120424)PHAGE_Pseudo_F116_NC_006552: hypothetical protein; -; phage(gi56692976)8.96e-49Showinfo_outline
26complement(120528..120653)Hypothetical protein; -0.0Showinfo_outline
27120783..121460PHAGE_Staphy_Stau2_NC_030933: hypothetical protein; -; phage(gi100063)6.14e-28Showinfo_outline
28121460..121681PHAGE_Entero_N15_NC_001901: gp50; -; phage(gi9630517)2.37e-05Showinfo_outline
29121692..122111Protein YubF; -0.0Showinfo_outline
30122165..122944Protein YubG; -0.0Showinfo_outline
31123103..123114attR0.0Showinfo_outline
32123349..123855PHAGE_Rhodoc_RGL3_NC_016650: antirestriction protein; -; phage(gi372449791)4.18e-10Showinfo_outline
33123898..124089Hypothetical protein; -0.0Showinfo_outline
34124092..124328Hypothetical protein; -0.0Showinfo_outline
35124282..124536PHAGE_Escher_HK639_NC_016158: DNA pol III theta; -; phage(gi356870660)7.22e-24Showinfo_outline
36124571..124723Hypothetical protein; -0.0Showinfo_outline
37124763..124888Hypothetical protein; -0.0Showinfo_outline
38complement(124927..125340)Hypothetical protein; -0.0Showinfo_outline
39complement(125294..125443)Hypothetical protein; -0.0Showinfo_outline
40125514..125744Protein YubL; -0.0Showinfo_outline
41125815..126477PHAGE_Gordon_Schwabeltier_NC_031255: RNA polymerase binding protein; -; phage(gi100054)2.96e-05Showinfo_outline
42136031..136044attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 140093 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download