Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1176924996

GenInfo (GI) Number: 0000000000

Download Results: 1176924996.PHASTER.zip

gi|00000000|ref|MUMN01000065.1| Klebsiella pneumoniae strain KPN_KPC_HUG_09 plasmid p1 71702, gc%: 53.81%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
133.1Kbintact1302738497-71668 info_outlinePHAGE_Stx2_c_1717_NC_011357(3)55.63%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|MUMN01000065.1| Klebsiella pneumoniae strain KPN_KPC_HUG_09 plasmid p1 71702, gc%: 53.81%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 29 CDS

#CDS PositionBLAST HitE-ValueSequence
138497..38514attL0.0Showinfo_outline
247557..47724integrase; B0W84_289000.0Showinfo_outline
348009..49136regulator; B0W84_289050.0Showinfo_outline
449133..49726response regulator; B0W84_289100.0Showinfo_outline
549723..50571peptide ABC transporter permease; B0W84_289150.0Showinfo_outline
650571..51491glutathione ABC transporter permease GsiC; B0W84_289200.0Showinfo_outline
751504..53108peptide ABC transporter substrate-binding protein; B0W84_289250.0Showinfo_outline
853153..54100acetamidase; B0W84_289300.0Showinfo_outline
954108..55841PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; B0W84_28935; phage(gi371496158)1.53e-19Showinfo_outline
10complement(57662..58009)PHAGE_Stx2_c_1717_NC_011357: transposase; B0W84_28940; phage(gi209447153)2.73e-67Showinfo_outline
11complement(58077..59614)PHAGE_Stx2_c_1717_NC_011357: transposase; B0W84_28945; phage(gi209447153)0.0Showinfo_outline
1259643..59660attR0.0Showinfo_outline
13complement(59664..60011)PHAGE_Stx2_c_1717_NC_011357: transposase; B0W84_28950; phage(gi209447152)8.81e-76Showinfo_outline
14complement(60008..60385)PHAGE_Stx2_c_1717_NC_011357: truncated transposase; B0W84_28955; phage(gi209447151)2.21e-76Showinfo_outline
15complement(60942..61577)His-Xaa-Ser repeat protein HxsA; B0W84_289600.0Showinfo_outline
16complement(61574..62686)PHAGE_Campyl_CP21_NC_019507: radical SAM domain-containing protein; B0W84_28965; phage(gi422935302)3.17e-07Showinfo_outline
17complement(62679..64067)PHAGE_Erwini_vB_EamM_Asesino_NC_031107: chaperone for long tail fiber formation; B0W84_28970; phage(gi100168)4.27e-05Showinfo_outline
18complement(64067..64297)His-Xaa-Ser system protein HxsD; B0W84_289750.0Showinfo_outline
19complement(64299..64802)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; B0W84_28980; phage(gi557307573)1.15e-118Showinfo_outline
20complement(64721..64996)PHAGE_Entero_P1_NC_005856: InsA; B0W84_28985; phage(gi46401643)7.08e-63Showinfo_outline
21complement(64953..65051)glycosyl transferase; B0W84_289900.0Showinfo_outline
22complement(65030..65221)hypothetical protein; B0W84_289950.0Showinfo_outline
2365275..65934PHAGE_Stx2_vB_EcoP_24B_NC_027984: Cat; B0W84_29000; phage(gi937456276)3.11e-167Showinfo_outline
24complement(66135..66512)N-acetyltransferase; B0W84_290050.0Showinfo_outline
25complement(66579..69545)PROPHAGE_Xantho_33913: Tn5041 transposase; B0W84_29010; phage(gi21231545)8.67e-46Showinfo_outline
26complement(69548..70108)PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; B0W84_29015; phage(gi100061)7.62e-69Showinfo_outline
27complement(70234..70584)transposase; B0W84_290200.0Showinfo_outline
2870649..70828transcriptional regulator; B0W84_290250.0Showinfo_outline
29complement(70787..71668)PHAGE_Mycoba_Butters_NC_021061: integrase; B0W84_29030; phage(gi479336499)1.36e-12Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 71702 bps
Phages: 1
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Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download