gi||ref|CP022109.1| Lactobacillus rhamnosus strain ATCC 11443 chromosome, complete 2990082, gc%: 46.77%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
838520..838536                     attL                                                                                 N/A                 CCCTTACTCTCCGTTTT
complement(838654..839781)         PHAGE_Lactob_Lrm1_NC_011104: integrase; PP_00825; phage(gi195661224)                 0.0                 VASISKRGKKWQYRVSYKDNDGTRKYVNKGGFPSKKAADIAATEVERQHNRGANLDLNKITLIDYWDKWIELYKSGKHSRITEARYKTIRKQLLAYWGESRELKSISKSDWQGFINEFGKKRAKDTVSKLNGYVRSMADSAVDDQIIYTNFTHNVVLTGNEGQAGIIKYLQVKDLRKLVNYCLEFADYEHIAYYIIATGALTGARYSEVLGLTWDHVDLKKHVVHITRTWDHRYGSGFAATKNKSSVRDIDITRELADLLLRLKKEQQEVYVAQGYRDSKQLLFRSIRHNMLSSTAINKDLRTIEKALDISPAITFHGLRHTHVSYLIANHVDINYISKRLGHANTMITQKVYAHLLEDQRKEQVSQTLQALSRL
840291..840512                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_00826; phage(gi557308017)      1.08e-29            MENGIYIVDEKDEVWDIDEASGMYGMFSSKPNIGPNEVAALLSGKALVDLSDGEYIHWIQLTPDAIKTARLRQ
complement(840795..841904)         hypothetical; PP_00827                                                               N/A                 VTTNKQMVPELRFKGFTDAWEQRKVSELADRYDNLRVPITASERVAGETPYYGANGIQDYVEGFTHNGEFVLVAEDGANDLQNYPVQYVDGKVWVNNHAHVLQAKEERVDNKFLTNALKHTNIEPYLVGGGRAKLNADVMMKINFKVPTLPEQVQIGKFFDNLDHLITLHQRKLEKLQELKKGYLQKLFPKNGSKFPQLRFAGFTDAWEKRPIKKIATVNGGKDYKHLNKGDIPVYGTGGYMLSVDQALSEENGIGIGRKGTINSPYILRAPYWTVDTLFYVIPKGTQDLNFLYAIFQRVNWKKYDESTGVPSLSKQTINAVEVTTPTQAEQELIGTMFKQLDNLIAVNQRKVELLKKLKQAYLQKMFV
complement(841995..842213)         PHAGE_Brocho_BL3_NC_015254: gp32; PP_00828; phage(gi327409424)                       2.14e-05            MFDNASKKATQYLNKQGLGDLGVGRVADEGVTFKQLSRDYQQKKIVLHSLNDKYPDRCLDPEDISIIGVVIN
complement(842285..842932)         PHAGE_Lactob_Lrm1_NC_011104: CI-like repressor; PP_00829; phage(gi195661226)         2.26e-50            MNTGDTIKKLRKTRGMTQSDLANRLGVAPTTVSSWERGAAYPLMTTAKSIADIFGVPVSVIAGEKEISNIAPSMPVHSYKYLDAGVSCGAPELVEAYTKDNLEEIQLSDAIMGRYAGDDDILIIHANGESMNRVFPDGALLAVKRTDDLSNGDIVVFSIDNEDFSCKRYYKNDEAKVVSFQPDSDDPRFEPYVYRYEDADNVAIFGKVVVYTVVL
843081..843347                     PHAGE_Staphy_phiRS7_NC_022914: transcription regulator; PP_00830; phage(gi560185989)     7.84e-08            MTGIEPAFTLEGARNNLHFSQKEVAEALGMSTKTYADYEKYRKVLRTDKAFEFAKLVKLPFDSIIFLPKDYETFVVGKKYLLTKGETV
843344..843607                     PHAGE_Lactob_phiAT3_NC_005893: putative antirepressor protein; PP_00831; phage(gi48697283)     3.72e-41            MNELQLFQFEDNQIRTVSSNGIIWFSAPDITNALKLTNTTVALKSLDGDEVTKFNLGGLSGETNLATEKGVTKLMTPGGKQDFVTVS
843709..844449                     PHAGE_Lactob_Lrm1_NC_011104: antirepressor; PP_00832; phage(gi195661228)             3.52e-147           LNELIIMHDRQAVTTSLKVAESFGKNHRDVLAAIRDLMSSAENYAVLKKYFIDGSYTASNGKTNPMYYMNRDGFTLLAVGFTGKRALQFKIQYIQAFNSMETQIRTGYAIPGSYAEALKLAANQAEKIEQQKQTIAIQAPKALFADAVATSHTSILIGDLAKLIRQNGVDIGQNRLFAWLRDHGYLISKGDRRNMPTQRAMDLELFDIKERTFQNPDGSVRITKTTKVTGKGQQYFINKFLQKEAV
844450..844710                     hypothetical; PP_00833                                                               N/A                 MKAEQEKQSLSQVCLNLKILKAEKLASYCEKLIEQHKKGTYDDAISDLEKQRRDHRYLNGFSDDDQVFQQAIDRIIKVALSQRIAN
complement(844703..845008)         hypothetical; PP_00834                                                               N/A                 MKNATLLFADGSRLELHEGEKLSGVSFSENATHPRNKDQEYEKLIYPELALEGVVLKLWSHPEVGLAESVFEVLHNYEWFRPYHESGHYYHSSAVISATFS
845524..845727                     hypothetical; PP_00835                                                               N/A                 LNEEAIAKLVPLISYLYTQAENARLVGHNYRQGTDQTRAYAMGREDGLQTAISLINEIIGKTKTAKR
845940..846116                     hypothetical; PP_00836                                                               N/A                 MTDGEKIQNRLFLKDNFKKYMDILGQTSLDMIKFEADLMDVRQNIADQCFHEGGDDHE
846109..846945                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_00837; phage(gi557308027)      1.05e-145           MNETPNYYAIIPANVRYNNSIQQGAKLLYGEITALSNKTGCCWAGDQYFMGLYKVSQATIQRWLTSLEKNGYIDRTVKYKDGSKEIEKRYIRINAYPILKNENTYTQKCEYPILKNEQENNTSINNINTRANSTLESDFEKLWKLYPKKIGKKPALAAYKRAMSRKKNPATNRQIQDGIVAYRQLIKSKGTEKRFVKDGSTFFNQEAWNDYLEVVKEEREEQEARKPKFDPKKTAIAMYIDYNSLDRVLEEIKAQGIPIKPEDAKRYIAEYDERRQQA
846942..848204                     PHAGE_Lactob_PL_1_NC_022757: helicase; PP_00838; phage(gi557308028)                  0.0                 LTKKLYDPSNPEPHVMYGLYTKPELIKSEWIDPKWFNSQQYAAVVAYMNKLPGDVDTLELQDGFDTAHPGVMSAADWQYIMTSDFGTSRFDWWVGKLKRDYFRSQLIKAAQAYSEEPSEDNLTAMMVASQNATAASQTVTESTIADLAADMEDKMIHGAADNGIKTYFTLNNILGGGLMPGRLLTIGARPGVGKSAFAVNLIIEALKQQPELTIDMFSLEMSNAENYNRLLACKTGISAGKFINPQKSLSDAEKVEVEKAGNVLKDYRLQLYDKQVELPQIVKTMRQRAAEAEKGYLAIVDYLGLIGVRGQPDRRLQIEEITRQFKVLTNELNIPIVLLSQLSRGVENRQDKQPVLSDLRESGSIEQDSNAIGFLWNSDRQDEKSDIRTVTLTIAKNREGALGSIDFRFFAPKLQFKVAY
848206..848550                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_00839; phage(gi557308029)      2.48e-72            MSYPTMTLKEFNEYMQEGHYQYSLFVILQLDEAVEYFKKAKQADAGMKKFWNQWAYVTLVDALETAESEYFGETSAYLPTKETDPVTRVYCQNTYDIWRGYLQKLNVSLPEQKF
848563..848850                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_00840; phage(gi557308030)      3.98e-52            MIEHENETNNAGQYWARERLRNFLDDHPSLPIYRFALIAGVSRITISSFLSGREVMMITLTKIAKAMGISLEKLKQPISEEEYKELLEESSNASN
848837..849091                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_00841; phage(gi557308031)      8.89e-51            MQAIKTKMMVGDLVMVPDRVFMGVRDLGGVARIIRIERYNARGARQDINKPVAFDNNAPKELIATVEMVDGKQRQYYLKDVKPA
849157..849453                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_00842; phage(gi557308032)      5.76e-68            MFGGAKVKKQATETVMLAVRKAMNQGVKFQWGKPLSFDWYWYDKRTDPDNIAFQHKFIFDGMQKAEFLENDNWDHIVELRDRFFIDKANPRVEVEEID
849466..849930                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_00843; phage(gi557308033)      5.46e-25            MNKKLTFTVTVLAGLMFGAGATTIADNVWQGHQNIVETKNNIDKLTAKIHASKSSLSDLQHQLSDAQAQYASLKQQYDNDMASKDAEIQQKIIEGQRAVAQKQAEVDAKQQTINDLTSQLEAAKQANNDLSQAIKDAQSIKDYSDQAVKSVNAK
850124..850630                     PHAGE_Lactob_A2_NC_004112: hypothetical protein; PP_00844; phage(gi22296563)         5.53e-74            MSEEKIYLIKNDHGEYLTVERTAPWWNSPVGTAVRNIDVALAWAEKYGGHVVTFVEEPKKVVLTKEQAEIVERAHSGKFPAASIAFYGDDDEEPLMNAYVNGYTVAKEKKYNVKVPHTKEVWYYKSGDTDLLTICPADKELRGKFTEAEIEHYGLQYCEKEEVTDDDE
850620..850796                     hypothetical; PP_00845                                                               N/A                 MTNKADIDAAQKAIDAANNAINKLDLCGLYDCAWQAHDGYQRIIDYNKEQLEVTDDEQ
850786..851103                     PHAGE_Lactob_Lb338_1_NC_012530: hypothetical protein; PP_00846; phage(gi226377805)     1.38e-26            MSNETKQDVFNALMADMSHGSEQWRARYDAAFPDNLPVIPKAVGDVIVKLKHKKFSLSGTMSYAAVVSLSPWMTFEHEDTFALAWVLGVWRVEETGEIVKLEEEK
851100..851309                     PHAGE_Lactob_Lc_Nu_NC_007501: hypothetical protein; PP_00847; phage(gi78000016)      3.13e-41            MSKHYEEMSQLDRTDKKMKFKIVGRNGETKIKEFRSQYEADLYCERLNYERLERLGLIEHLNMTAIKFD
851654..852082                     hypothetical; PP_00848                                                               N/A                 MELLSISDEKDREAVENILNKYRAERGFIKAPVNPKITSAWGDGTSASTVQRPLYAQQRLERQESARKFCEWCDSCIASMPKQSHQRLLRVRYCDGPETDTPDGDAMNILDISAATYTRRKKNALLAAAWYFGVTPRKSSEQ
852617..853282                     hypothetical; PP_00849                                                               N/A                 VKLPLYERIGDFVLGIFHVMKTKWDKIIPIIISIVSVAISLNTWNSYRTANEEYMQRSNQALVNSSKLAETDIDILTGKVAESDHIAVTKNQIDYQIYSLKQNLKVIEDIQITRLPQRNSMNYQVYRKDLADVIYRLNAKVTELFENKKYKQSFYLTAGDREDFMNSLAVVRRVLLDDRNALQKRNDLATKYLKFNQKFQEKNGKDLNERVSGDLNVYGGK
853925..855142                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_00850; phage(gi557308044)      0.0                 MQWTDEQIGDIRKLASEGFTRRETADKLGISYDALQGKARRLGIEFQKPAKNEYDSAKTDRNSKPVDRKVALNADGSQTVTALMRLKHEPNKDPRTLMELCGYDPDKFEMVLGDYKVYEQHSTEDGTVPQYSIHIRVKPKQGLSINEMAEAFNDKIIPVNYGMKKSGDRNLVIPLPDLHFGWTTFADLKDMVSQLREIIMDGYNEIVIEQLGDLFHSDQIHATQTVRGTQLDHANMRQAFHDAVKLFDQIIPLAIEYSNRVSIKSVFGNHSGDLEYAFLYALIDRYPQVHVDLNDSNPATDWRCAYLLGHVGIMLAHGDVAKDKLTGLFPFEYKKIFNMAKTYELHSGHYHSERFKDDRGIMWRQLGTAKPNDPYEIKNGFTTGKHLLYAFVYDDERLRCTYELN
855129..855659                     PHAGE_Lactob_PL_1_NC_022757: HNH endonuclease; PP_00851; phage(gi557308045)          1.55e-126           MNSTEVWKDIEDYKGLYQVSNLGRVRSLDRVDMRGNHLKGKVLAYNLAGAGYLQVGLHRDGKVEQKLVHRLVSEAFLPNPDNLPEVNHKDEDKTNNNVSNLEWCTRLYNMTYGTLVERMAKANGSPVYVITSSGHRYYFDSIKKASRLLGLKDTGVHACLCGRQKHHHGYTFELAV
855750..855986                     PHAGE_Lactob_Lc_Nu_NC_007501: hypothetical protein; PP_00852; phage(gi78000021)      2.00e-48            MNAIIYTKPRCQKCRRTVFKLSQVMPVQTITADADDYERFRKLGYRSMPVVTIYKADGTHDEWCDLRVDKIKQYTEMI
855990..856136                     hypothetical; PP_00853                                                               N/A                 VQFPITAHTNIRAGQAIRLDRMDLAASIRATNSDDCFTGVVYLIWDHH
856189..856983                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_00854; phage(gi557308049)      0.0                 MPSKKLAFINGRPQLVDANARVRSEADRQYNRVRNEQQSDYLRFYHSNEWKQLREQILIRDNSLCQRCGLQASLVDHIVPSEDDWEDRTNADNLQALCRDCHYWKTRRETTKRKKGQHRAMKITVIVGYPASGKSTYVKRHQGQHDLVYDYYHLMTALTGLPLHQGNIDANDYVQLIYELILRKLKAEQTFDHVWLVMTYPDDKLDTLLASRDVEHILIDTDRDTCMQRLSKQGRDVSQLIKAMNKLDEMKSENKFAKFKKIKN
857184..857639                     PHAGE_Lactob_PL_1_NC_022757: terminase small subunit; PP_00855; phage(gi557307994)     1.02e-106           MAGKYKVLQMSKGDLTKERQEAKLHAELMAKDGIPKLQVTPPNHLDPVAKQEYKRIIESLGTLPLRNLDRAELENYCTWYSVYKNTSVNMKLALKNGDQDEYYAYISTLNKATANIKSLASDLGLNVNSRMQMSMPKTEAQKNDSIIDTFG
857661..858605                     PHAGE_Lactob_PL_1_NC_022757: terminase large subunit; PP_00856; phage(gi557307995)     0.0                 LSKFKDPMPNFIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWRYDPNLAGKAVKFMEILPEPKSGKPQPLAPFQKFIIGSIYGWVDKDDPNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEETAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDIVHDQITLFDHKAISSTC
858556..859371                     PHAGE_Lactob_PL_1_NC_022757: terminase large subunit; PP_00857; phage(gi557307995)     0.0                 MIRSPYLTTKLSQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKDAELSEKPDIRGKRAWIGIDVGRTSDLFAITWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHSEGEISSLESGIIDNDRVYEWLEDFIERNDLDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYANKIDMIDATLDAYAIAFKEDLDNYLDDERVFSDDFGF
859383..859574                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_00858; phage(gi557307996)      4.09e-35            VNGKLANFFRILGANMAGIATVLGFILAGYGAFLINRPTGFMVCGGLLFVLAFILLLPDNEGR
859579..860715                     PHAGE_Lactob_PL_1_NC_022757: portal protein; PP_00859; phage(gi557307997)            0.0                 MKLFRGLATEADPHWADNLLDSGVIPSFRGAYLGISALRNSDVLTAVSIVAGDVSRFPLVITDSSTDEVIDLSDIDYLMNTKVNKRLSAYQWKFSMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPENLVYRFTPYNASVQKVCSFEDVIHWKFFSYDTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKESRLSAEARQKIREDFERAQAGADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQNSPNQSVKQLADDYIRNDLPFYFEPITSEFELKLLDDNQRHQYRIGFDTKSVNGLPIADVNTAVNGGLWTGNEGRAELGKETVKRPEHGSYSVDT
860690..860833                     PHAGE_Lactob_PL_1_NC_022757: portal protein; PP_00860; phage(gi557307997)            3.53e-18            MDRIQSTLNTVFLDQKEAYQAEHASQLKGGDANDKGAANDSDTHANS
860805..861011                     PHAGE_Lactob_PL_1_NC_022757: capsid maturation protease; PP_00861; phage(gi557307998)     3.99e-30            MTATPMQIRDGDEKHPTVIEGYALKFDRKSEIMGGGEFSFREHIDRHALDNADMSNVVALFNHEITKC
861005..861292                     PHAGE_Lactob_PL_1_NC_022757: capsid maturation protease; PP_00862; phage(gi557307998)     4.79e-39            VLGRTGVNLELTIDDTGLKYTLTPPDTQLGRDLLENVRQGIISQSSFALRLRPDKDAQKWQKSSERGVKYERTINNIDHLFDVSPVTTLLIQTLR
861525..861671                     PHAGE_Lactob_PL_1_NC_022757: major capsid L; PP_00863; phage(gi557308050)            1.21e-14            MKTELRSLLEGEDSEENLKKAEGVRAKYDKAGKRSKILKKNVTYTRLR
861668..861907                     PHAGE_Lactob_PL_1_NC_022757: major capsid S; PP_00864; phage(gi557307999)            9.12e-39            LKGNEQPSGKKPNHPEEHSYRDALNAYLHTRGRNTDGVNFEKTEAGEFAIFRADPTDASDAVNAGVKAADAARDHSRNY
862024..862158                     PHAGE_Lactob_PL_1_NC_022757: major capsid S; PP_00865; phage(gi557307999)            1.87e-19            MATVAELEKNPAMAKPDFKSIDWSVETYRQALPVSQESIDDSRN
862173..862661                     PHAGE_Lactob_PL_1_NC_022757: major capsid S; PP_00866; phage(gi557307999)            2.79e-102           LPRTHNKLRSNTTNSAVATLLKGFTAKTISSIDDLKHINNVDLDPAYSRAIIASQSFYNFLDTVKDGNGRYLLQDSILTPSGKSVLGMPIVVVSDDTLGAAGEAHAFLGDIKRAILFANRADFMVRWTDDQIHGQYLQAGMRFGVSVADEKAGYFLTYTPKA
862709..862918                     PHAGE_Lactob_PL_1_NC_022757: major capsid L; PP_00867; phage(gi557308050)            1.35e-33            VPTKDITVTVTPDGAPQAVEAVSSDESVATVVKKSDGIYTITNLAAGTATITFSTNGISSTLAVTVNAG
862930..863049                     PHAGE_Lactob_PL_1_NC_022757: head tail joining protein; PP_00868; phage(gi557308000)     4.98e-17            LADTTLDKSPLTDEQFQVLKMYLKVDQTIEDPMIMATGA
863184..863381                     PHAGE_Lactob_PL_1_NC_022757: head tail joining protein; PP_00869; phage(gi557308001)     3.23e-09            MGAEVMRFPLQTSTTNIINQLSLRIAGKRMVILMRTNRMTERIAFVSYESKKVNGVPVMVCLLSI
863486..863614                     PHAGE_Lactob_PL_1_NC_022757: head tail joining protein; PP_00870; phage(gi557308001)     1.45e-22            LTAEEIQPTWRIQWRGNEYQITGLDPDYERRDLTTITAKAVS
863772..863999                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_00871; phage(gi557308002)      4.80e-49            MSGHLRDDIKLSSVRETSGVTEVDVGYGKNTGWRAHFPNSGTSMQDPQHFIEETQEVMRPVVIAAFLSHLKEGGM
864419..864547                     PHAGE_Lactob_PL_1_NC_022757: major tail protein; PP_00872; phage(gi557308004)        1.96e-05            MADTAVTTNKKLAKFGASALNTGLSVMTTLYQAHERFKAYLV
864544..865032                     PHAGE_Lactob_PL_1_NC_022757: major tail protein; PP_00873; phage(gi557308004)        1.68e-111           VKLDIKTEQKTLSADDGPYLILSGGITEATETIEMYDVDSQMKSDLFGINVVNGVEVYPKNLSPNYAATLFRTKLSNGKYVWVGMLKGMFSLPGVDTKTVDGTPDPSADSIEGSFIPRGDQDTGNVVLIGREDNDGFNFDTFHSYVFPKTAEDATITPATPA
865135..865311                     PHAGE_Lactob_PL_1_NC_022757: tail assembly chaperone; PP_00874; phage(gi557308005)     1.38e-27            MAYQIKLNIKGETCVFTRNGEPTLRDTTNALKVQQQQLRMLNRKDGLQTMITMRTRKT
865383..865547                     PHAGE_Lactob_PL_1_NC_022757: tail assembly chaperone; PP_00875; phage(gi557308005)     2.29e-28            LKSLDSINDAIGDSLSDGEEDKKDTAKKSPKRTSKKPLATLTTSTKQGSLKATD
865670..866860                     PHAGE_Lactob_PL_1_NC_022757: tape measure; PP_00876; phage(gi557308006)              0.0                 MLGNLGQIAATVSLNIDPFQVSQRVLNSSIKATAAELRAQDAAFKGSEKSINNMRSTYDTLSRQSKNYQAQLQKQRERYDENSKAVERLNKSETASQEEINRATKLQANAASQYNRTAAAAAQNENRMAALRKEIALQSDGWTKVSNGASKFASVTEKTSSKLTSFGSTMTRAVTAPIAIGFVAAAKSAIDFNSQIQAMGPLLTNGGAITAKYRAQLDQLASASKKWSVEYGISTAAINDGMSEMIKRGYTAAQTLGAMPAVLNAAKASGDDFNDVMHVSTSVLEQFGLKTESTTGMLKNTSRVTDALTYIANATAAGFQDMGEAMTYVGPSAHAAGISLEETAAAIGIMSNKGIEGSVAGTALRGALTRLLKPSKQNIEGFSELGISVADFKKER
866967..867296                     PHAGE_Lactob_PL_1_NC_022757: tape measure; PP_00877; phage(gi557308006)              2.97e-56            MNALISAGGGELRKYTSEAEHASGTTAKIANQLNNTDAAKLKRFQESIHVLGIEVGQKLLPTLTPLIKTATDVVNAFSKMDSGTQQTIIKFAAFAGSCRASEFSYRWSS
867385..870048                     PHAGE_Lactob_PL_1_NC_022757: tape measure; PP_00878; phage(gi557308006)              0.0                 MDVLKSGFSKTAFEALKVAPAAAAVADGASGMGAAMGGAAASGTGLLAALGPIVPVVLGVTAVVGAGVAIWELWGKKALESADRTSRWGTDIGADADRSASKMKDASGEISGAFDDTNHTVTQNAKTISKGFNDLTKAAKEAADQSETAAKKLAKSLGGEAADNIEKQAAKEKAANAKRIKEMESNNKKAQAITASFNKSGAQMTADQYQLLDNYRRKNAALAVKTLQISGSQQNNVLKAVLGERTRMSKSAALEQYQDMWNAANKENSAYKSQQAKINEEFKNDATMRHVALEGLERDHQNKMKSLYAGAIQAMKAQGTSRSEMLAELQTDFHLTASQAESAMNSYENAMAKGVKSNRDFAAATEGFGKAAQQAGDHWNNLVFDTKTGKVKTNLPEVLKDTASTKKGWKQLVFDLKYAKITSNAKQMIVEALASSEQWQKLSVPEKNAIIRTQGREQLADIMDKFVSWNSLSLKDQQAIVKGDYTPLVNALVKSGDWNNLTLKQQEAIVKDKATVPLVSSLQQTGEWQKLDLKVQEAIVNAKGKKDLEDIIFDMGVWNKLPNTQKYATLVSFGKQDIADIIDQLNLWNTLTPKEIKAVAKGDTSSLIAAIDKANDWNRLTLGQLEAIVKDKASAGLVQAMIKAGEWNGLSIEEKTAIMQTKGKSDLADMVVKYGLWNSLPNSTKSLLMNDSDARTKLEKAGVAIDQYNLFKNPNEKGLKANNTDVLGKTEEAKGSIQKYNEVLPGLKLFPADASKVKHESSSGGTSIAKYNEVLPGLKLFPGDSSSVTNHAEKGKEEIGSFNATNPLMRFFQGNSGSVDGASKSGKSSITSFNSKVPIMMFSMVTQMVFHQRHKLVLMRLLHSVAMLPSQKHSGLVQILIPLYNDF
870165..870560                     PHAGE_Lactob_PL_1_NC_022757: tape measure; PP_00879; phage(gi557308006)              3.94e-15            VAYGRNVTLPLPRHTKIETAMQSARNYSIPRFAGGTTDFGGAANRINQLNPQTFAARTPSTVNVSGITNNMTLSDQTIERLGKALASNVKPDNDRPIYLIVDGKVLGQVVGPMLNNANGKAIQLQTRGVTS
870560..871273                     PHAGE_Lactob_Lj928_NC_005354: hypothetical protein; PP_00880; phage(gi41179329)      1.90e-19            MPFHDFTYLGKRPSDFGAYIHVVSHDIGFPSKIKTIVSVPFSNQSYDFSTIGGVQPYNERKVTYVINVVNKYGYDQVSMHELKTEIANWLYSSNSKAELYDDKLPDYHFLAELQEAADLKDDVRSGELTVVFTCYPFMIANKFEGDDDWDTFDFNNDVAQDVDFEINGSRSFELINNSVTIVTPQITTNAALTVRIGQIEYQLPQGTSQDIPLEVGTNTITVTGSGKISFAWHREVI
871275..872747                     PHAGE_Clostr_phi8074_B1_NC_019924: putative phage tail protein; PP_00881; phage(gi431810378)     9.68e-20            LYQVTIINNDKSIVIMRPGGSRTMLTSAEIKTDINSIPSFTFSVLPNNPGYNEIMPMVTRVRVVRIDTGEVLFDGRVLVPTNEMAETGALARSYTCEGALAFFHDVVPGYQTFTGTPATIIKQLVDMFNSRVDPFKQMQLGIMPESTQSQTLETTPEKDLYDTLHDFVVTTLGYDIRVRSAQNGRFLDVKSQLGETGKTIIRLGINLKAMKVETDPTGIITRVVPLGAVKDNVSSEESVQPRVNLTDAGKSLYVDIPDLINKYGVLEGVQVFDNAKTPEQLQEAVNSWISGQRPVTRKFSVTALDLSLLRRAPEDFKVYNFNRVINPLTQTDETMRIVGQTLDLIQPQNAELVIGDKFKSGVDYAVDTVAKNLNNQRLYGQIQKTVLGQSARIELVNTNAQDALKAAQEAQQTVDKIQTEFSDADINGIKNSLTDISDKLNSITENIGAIGKDVDQLKKAQTTSTGATLATIEERVKKLEDAAKPAEGSK
872747..875860                     PHAGE_Bacill_G_NC_023719: gp353; PP_00882; phage(gi593777809)                        1.80e-12            MVDKQEPYRDPEHIPYENSIREDINNGFVDNISESLATWIRSKQWGLDVRESLALAVEWFSKMKNETPRGTYPTFDDLKKAFPNGDGGKSIYAVLDSQRWYYYKNGAWQDGGVYQIPAIDAAKMDQIGQYLDNLSRNNLVPNAKFQNGLINNAVPSVAGVLLSVSHREGTTWVTVQSPSGTVNNQGVGIVVPRLNSIGQPVIGTGSYRLGVRIVSAVDQNLKITLIPRKANGDWLPSFDFGTFNAHAQKIMAVRNSAHIDVTGQEDNFLIMVWNTDGQPVSFSATDYSLVKEDEVSNNSDLESGYIEAANRDNVFRNSFFTEGTTPWQKGGTDVDFRNELYADKKWLHVWTGGHTGQSVSYLGADGTKLVNGVRNTGVRGSLIIKFNAASVIDIHAIFRDVNGAVLDDVIVNTVKSRDLAVPTKVNFFIPRIGRPDLSTVLITFKDHYSAAFDFNVTEIVGYPIAFEKPDRLSMNVVDDPTLKTGSAYFRTSNGGAYSPVMLLNHRWIKYSCPAASKQPTSRLEYLFNNEETTNDDFRTHNVLVECDVLVDTTGIYTVNATSYDLNNAKVRDYVITALPLTAGVINHIDFILPRFQPDEFNYGFGLCSTSTGDLSYSVSNINIRADVGIDNQGEHAFTSGTNLPVIKIDGTLPTQKGDKTTVTVRILKNGIAKNYFAKLSIQGDSSATYDKKNYKLKLYSDPDCTVKAKFKAAPSWLNEGTIVLKANWIDVTHALNIVSAKLFAEITENRANVNSNLLNASMLGEIQGTPALLYTNSSFHGLYTINTGKDENLFGFDNVPSNAGVLEAQNHFTDKGFGKPTIVITDDITANPDADMEVQVGTTTPEFQAATNRLAQFVSQSDDATFHDQFSQYLDLEAVIDFLIFYQVAECSDSYIKNIEYTTYDGNIWLPIPYDLDSTWGLNWDGKTIFDPEMDMLNTGLTSKNFANFKLNMLMNRTLKAFKPEIKARYTQLRTSVLTPDKVTSMFEEFMDSVGTNAYAKELSRWPNIPSTFFDFKTLRKNVITRFRISDYIFKNL
876002..876295                     PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein; PP_00883; phage(gi195661217)      1.80e-59            VTFFGYTIGDWAEVISIIGVGVSAGSWLFKKIALDPLRSDIQVLSETINRQLKLHEQSLADLGQHLRTHDDELGSHSVRITRLEDHVGIKGEDNHED
876285..876698                     PHAGE_Lactob_A2_NC_004112: holin; PP_00884; phage(gi22296539)                        4.84e-80            MKINWKVRVLSVKFWLAVVPASLLVIQTVAAVFGYNWDFASLGKELTAVVNAVFALLTIVGVAVDPTTEGVSDSQQALAYPALITTKAAKIKALEDQIKALQADKEADQVTAASEVVPETSSAAPAESAPASFAPQQ
876713..876985                     PHAGE_Lactob_Lb338_1_NC_012530: hypothetical protein; PP_00885; phage(gi226377704)     1.66e-41            MNDLDFRNTCQRLVADYANDHMDKTDGDSITPDDVYIVWSCRALQNSKALASTKVSDGMYYEITYNGDKHELYLDAYKKFENRAIQIDKE
876997..878181                     PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; PP_00886; phage(gi100023)         0.0                 MKLKTKLITLVVAFLAAISFALPSQANAAKGDQGPDWSKYQGASGRYGTGQDKFIIAQIGGTYGGTYIDQWTYDSQIASAKAAGKRVHSYIWYGVGGSSQLGLEALDRYMPRIKAQTPKGSIVALDYEDGASGNMAANTDAILAGMRRIHSEGYTPMYYSYKPYTLAHVDYQRILKEFPNSLWIAAYRDYLPTTKPDYGYFPSMDGVAIWQYTSAFGLSQGLDGNIDLLGVTDNGYSKQPATPSVPVTPVPSQPAKSNAASDTDYAQAGVFKPSTTVNIRTGAGTGYASVGSYAPGESVIYDHVYIRGTYVWARYLSYSGRYRYVALGVNGGESYGSRSSGYTSLVSHTYYTVRYGDSFWSIARKYGISMYTLAANNGKSIYSLIYPGESLYIR
complement(878329..878901)         hypothetical; PP_00887                                                               N/A                 MEILLILYFIFYLSGKICRSHISSTVLLVVTGNIVVFLLFYLNSYPHNWYNTVLCFSLGILWALYEPLLGKVMRSKSLYIGTIIFLLVLFLFLFLSRKLEAISSLLFAAIVIMISYTFTFKNSFWKKTKHIGLEMYLYHGLFISLFRGKYLFINNTFIFGASIFLATFVTALVINKLTKLFLSVVQRHAA
879108..880124                     PHAGE_Staphy_phiPV83_NC_002486: transposase; PP_00888; phage(gi9635740)              8.49e-44            MTHSQTNTHKHYQQLSFSDRATIQALQAAGDTATVIAQKLHRSKATISREITRGSVTQLDSKRHSHQVYLAETAQAMHDRKRDRTGHYAFLKTGRAFFKALARELTRKPRVHSVDSFVHFYRDQGKACPSTTTVYRYIDAGLLELDNMTLPKKLRRRIKGYKNAHKRKNKKIYGDSIELRPAAVNDRTGVGHWEGDLVKGIRLADEPALMTLTERYSRTEIIVKIPDYHAGTCLKALQDTIDDYGAKEFESITFDNGSEFAKLSEIVGTQIYFAHPYSPWERGTNENANGLLREFFPKGKSLRAVTLVEIQAVQSALNHRPRRILNYLRPCDYYRCMA
881511..881527                     attR                                                                                 N/A                 CCCTTACTCTCCGTTTT

#### region 2 ####
1048163..1048175                   attL                                                                                 N/A                 TGGAGGTGAGGAG
complement(1048245..1049393)       PHAGE_Lactob_Lj928_NC_005354: putative integrase; PP_01059; phage(gi41179288)        9.73e-35            MAIKKVKLKSGAVRYRVTVNAGLVAGKRKNIVRNVQSMQKARLLESKLKLDVANGLYDEEDTTPPVHTFSDLYNQWWPIYVQTVEGSTAYKTKQLFHNHLIPMFGSKTLTAIKTGSIQSAVSQWRETTTKAYKERFIYLKKILSFAVKMQYIEKNPADGVELPRGVRSGKSPVYWDNKQVARFLTCIDPNNDPEKYTMFLLMVSTGIRREELCALNVSDVNFKTSTLSINKAYATGLNGKESIKGTKSTAGMRTIPLTPKVTIQLKKWIALLDTSKIISIRDDRPLFPSPQHFEKRLGINRPNKWLKDIIEANHLTPRITLHGLRKSFVTNMIRSGVDVSTVQRLAGHSTPDVTLRIYAGMNQSDAREGIEKLADYMEQVTF
complement(1049501..1050160)       PHAGE_Lactoc_lato_NC_004746: hypothetical protein; PP_01060; phage(gi30089869)       1.37e-12            MLQNRLNVLIAQKGYSIKKVHDDTGLSRTTISNLVNNVGGGIQSVTLNRLCLYFGITPADFFDFVPFDLSYDAVADKLSALNIVSESDDPGGSFFNLIISADNGQLSVNKYYFRVGVFFFNKGLSDPQDYKVPYSAYVYVAGWSQDKHQEEALQFKRMYFDKMPAAFQEQFYTSCTQHIVEYVSLSLAPKRLIFEADSDYKMIVNLPYGRTVEASIIPK
1050329..1050598                   hypothetical; PP_01061                                                               N/A                 MKAELVLSEDFDKQLQDRIHQEVIQAVSKLAPQHDEPKKLNIGQAAVYAGVARNTLLSWTRKGLPMQVVGGVKRINTADIDDYMNNHGK
1050666..1050887                   hypothetical; PP_01062                                                               N/A                 MNLFSKEEIALDHELGNLIDDIQLNVHGIAEDSTVTVDGKYIPNSELAVTTAKELLRVSEILKMYENEDDADD
1050998..1051189                   hypothetical; PP_01063                                                               N/A                 MAQRVSTKFGWQWHDYVQADADCDRYWAAKKAEKRSLIEATKKSPRAATQGEKKTSEKIYIDF
1051234..1051509                   hypothetical; PP_01064                                                               N/A                 MIKNVSNSTKAPDLGMASYNLSTAKGLLEALSDEFDTMEGSVISYRNDRNEKNAAILAYGTNRSFYTWMALLRTIQEYVDSSLATIDEVNK
1051506..1051694                   hypothetical; PP_01065                                                               N/A                 MMKEDYYTTAQALLSDTSAMVNILRHQINDEQQSALADTVADMIIDARRLLMEGDAADGRRA
1051678..1052505                   PHAGE_Lactob_LfeSau_NC_029068: DNA primase; PP_01066; phage(gi985757763)             1.16e-25            MVDVLKVALGYQQHGFSVYPLAPETRTPLTGSHGYKDATKDPEQAKKWWGEHPNYNIGLGLDGVLVFDIDMGHKSEANGNESLAKLSAEGRADQIPSTYIETTPNGGLHIFFTYPKELKLTSRSDLFSKNGEKTGLDYVATGVPVFPSIRENGMYQPLKGHKITKLAPAPKWLLDEIQRVSHPNLGFGGSTVYRGKRWTGKLLDEIVNGASTGNRNDFLTKIAGKMFFTGAEPQTVYNLLFTTNDNYLDTPLAEAEVNKIFKSVLKAEERRRAVG
1052498..1053922                   PHAGE_Staphy_StauST398_2_NC_021323: virulence-associated protein E; PP_01067; phage(gi509139907)     2.13e-74            LVKTMPEDIKQEAKKVVNVDFTGQEQWRNDLKLDGNGGIRKDSVVNIQLLLENDPTFANVVAWDDFSEMLIKTKGVKGLPIRKGFWTDEDDAVVRSYMERKHNLLFSKQNEQDAMVVVGKEHSINPVKDWIEAEQWDGTPRAERYFIDYLGAEDSEYTRAVTRKWLAGAVKRVYQPGCKFELVPILEGKQGLGKSTAARNLFPKKFSDSLKSMGKTDEDYKKLQGNWIMELGELSAMKKTEIESAKSFISAQSDSYRGSYSHYVYPHLRKCVFIGSTNQQDYLKDATGERRFFPIRCGVTKPTKTVWRNEESVPKINHDIHQILAEVKTWVDAGESVFADDKLMQLAKPYQQEAETVDPMKEAIEDFLNMKVPSNWENLSLSLKASFFHTHIDHNGDVATWLQQHLDAGELQPLQQTTTREIMEVVFDKSVDRYLMGRTNSDAKRIKLIMDNMEGWQAQRLRVNGNRPHGYVRT
1054186..1054527                   hypothetical; PP_01068                                                               N/A                 MTKTAYRKAALVDVKHDRDKWAELGALVKERYLVRSMTPKDWFIIVKQREGYEIEVYPTFEMSDGFQFSHVNLLTRSSYGSISHIAYHELCSSASDTISSIDRMIDLVKDKRY
1055109..1055579                   PHAGE_Staphy_phiPV83_NC_002486: phi PVL ORF 1 homologue; PP_01069; phage(gi9635714)     5.73e-22            MGAPLKSVTNLSAHLSKKQLADRVASEKALFTYKELQVQPPTWLDDYAVTEWHRIVPLLKKDIPVSELDAALIASHCQAYSDIQKAAELIQKQGMMVETTDSVKANPAVKMKLDATNQMMRIDEVLGLSVYSRAKLALKSETKKKPDDPFAELVSS
1055576..1057279                   PHAGE_Lactob_LF1_NC_019486: bacteriophage terminase large subunit; PP_01070; phage(gi418489385)     3.67e-138           VNYATEYTDKVLSGEIVAGKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAVEFIELMPARDGSPLKLELFQKYLISELFGWRDKETGNRRYDRAYISMARKNGKSFLTADLGALYLLMENKPAMNREIVYTANSNAQAHLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRAVPLASDLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPDLNGPMYKEYKFVSKVLTGREQADRYFIAIFEQDSKDEAFVPETWEKSNPLLANTERAKTMRPSLQADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKAIIEPPDTMGKDVYIGLDLSKSSDLTSISWLVPEDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLDSGMIDYDEVLRFILDMIERNQWNVRAICYDPFAMGYLIPEFEKRDLPLLEVRQGVRTLSIPTTRFRDDLFNGQLKHPDNQLLAYAVNNAILKYDANNNPIIDKAHNATKIDPVAALMNAYTIAMDQNKESEVADNDFYSSDDFSF
1057245..1057424                   hypothetical; PP_01071                                                               N/A                 MTFIRAMTLVFNVQTVLLLLGLICMVVGIWWLFGFGVGMLAVGTTLISVAVIINFNKGR
1057429..1058613                   PHAGE_Staphy_StB20_like_NC_028821: portal protein; PP_01072; phage(gi971746491)      2.16e-72            MSFFTNSATQPRDDNSDPFLDALVSMTSNDSGLYVGIGALRNSDVFTAVRVIASDLATNPIEYSDKRISVLLNKAPNDHMTAWAFKFALAANMLLNGNSFARVTKNPSGQVTGFELVPNSQMVVKQDDTTGIISYEYTPDSGRSQRLNASEVLHFKCFTQDGYKGISPLYSLHDEVGVQKSGHALLKGFFNTGVQGTGILKVNKTQLDSKAKENIRNKFEAANSGDNALKTIILDNDMDYKQLEVNTDVLNLVNSSDWTTKQIAKAFGLPLDRLGIESEHSNAVQSNVMYLQNTLIQYFTCFTSEMDAKLSTGDNRYSFNTDKLFSADPATMQELAVKGLQGGVLTTNEARAKLNLPPITGGDEIMASLNYTPLSNLTNYQNTRQRSDPENESR
1058600..1060144                   PHAGE_Entero_IME_EFm1_NC_024356: capsid protein; PP_01073; phage(gi658310465)        2.93e-49            MNQDDVEKRLNPNAGLTAKADDSKGQDDPDTQQQKDTTSSPKKLSGYAVVFNSPSKDLGGFKEVVDPHAFDDVDLSDVYMVSNHDFSQVLASTKAGTLTLNVDDKGLQFEATLPDTTTANDAYNNVQAGNLSAMSFTFNAAPDGDTFTKDDSGQVIRTIKQVKSLFDVSLVAIPAYDDTNVQVDKRSYTEWLKTNTEQPEKGDKTMTEKTIIDNKEHTESRAYEDYIRSMGEQRDGITTTTAGAVVPKEVINDVFDLKESDYDLAKYVTVKQVGTPVGTYPIALTNNGVLATKAELADIPDIDSNLFRGVDYKVASRAGKIYLSNELVEDSEVDIVAEVKNQLKKLVQNTDNSNIISVLTGKTGTNDNFKHITGTGLDDLKKTFNIELDPALSLSVIVNQDAFNYLDTLKDSEGRYLLQPSITAPSGKQLFGAPVIVIANKVLPTDKAGTYRIIIGDFAQAIFLAQKNEVNTQWERFDSYSQGLAVVIRNDYEVVDPDAARIVDITPVAATPAA
1060200..1060490                   PHAGE_Entero_EFAP_1_NC_012419: head-tail joining protein; PP_01074; phage(gi225626391)     4.99e-12            MSVTTEDLKRALRISHNEDDAMLSAYLLTAKQFVISAVDQTLTDENFGDDPRFDFAVSLLAQHWYINRGVDGATYVPDSVVSMIQQLRGVDYATGK
1060600..1060815                   PHAGE_Entero_EFAP_1_NC_012419: head-tail adaptor protein; PP_01075; phage(gi225626390)     7.20e-11            VLSQYLSEVKASVGTKLEDTVTFVIRYDQPETILNSWCIEWQGKQYDIVKLTPDTAKKQWTTIIGKPVAN
1062657..1062669                   attR                                                                                 N/A                 TGGAGGTGAGGAG
