gi|00000000|ref|CP027415.1|  Salmonella enterica subsp. enterica serovar Typhimurium strain 113066, gc%: 50.38%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
37902..37915                       attL                                                                                 N/A                 CGCCGGAACGGATT
38285..39070                       PHAGE_Mycoba_SkinnyPete_NC_041882: u-spanin; CEP98_25540; phage(gi100032)            1.54e-06            SalmonellaentericasubspentericaserovarTyphimuriumMQHLPAPIHHARDAAQLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDAWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQFAMPEADAVALIKQLERR
39324..39527                       hypothetical protein; CEP98_25545                                                    N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMIFQHDSSNKIDCSYHAVHIRPSALFMLCYLQSCGNLASSVDAILNEVSFIVNVTQVFGCQFQHSAK
39654..40286                       PHAGE_Rhodob_RcCronus_NC_042049: u-spanin; CEP98_25550; phage(gi100032)              1.37e-37            SalmonellaentericasubspentericaserovarTyphimuriumMAWIVGFISQKGGVGKSTKARALAREASACGIKTKLADLDLEQATSAEWHRRRLSAGLSPVASVEVFSTAKQAIESAGDFDLLILDGPARASKGTSEIAKVADLIVQPTGASLDDLVPAIKVFNALVKEGIPRSKLVFALSRVGTEAEELDARAYISEAGYETLSGCLFEKPAYRKAMNSGLAVTETRYKGLNERADELIQALIDKIGEE
40457..40660                       hypothetical protein; CEP98_25555                                                    N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMVTQTVTEVYTRRDGRSARKTNRTLAFATRVTPAFDQEIRDIAEREGLKLVEVLEKAVEAYKEKQGY
40899..41873                       PHAGE_Escher_520873_NC_049344: hypothetical protein; CEP98_25560; phage(gi100015)     2.17e-78            SalmonellaentericasubspentericaserovarTyphimuriumMRIFCDDGSTNVKLAWFEGKTLKSAVSVNSFRHNWKVEGLGSSRTYNYLLDGRKYTYDPVSEDAISTTHIEYQYSDTNVLAVHHALLNSGIEPQEIDLTVTLPISEFYTADCQKNTLNIERKIRNLMREVTLNKGGTFTIKSVEVMPESLPAVFTRLVADNVGQYEKSLVIDLGGTTLDVGVIVGQFEDVSAVHGNPDIGVSMVTKATLTALKMASSDTSPMIADELIKNRNNLDFVGQVVNEVSKLNLVLDTIDTAINKLGELVVDDLLQYRNVNRVYIVGGGAALIADAVRKAWNHLGEKVVLMDEPQTALVQAIARFKAEE
41877..42269                       plasmid stability protein; CEP98_25565                                               N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMYEGEERKKLSLYLHPEDSADCLALAEIETVPRKKRGELYRQALITGLIMHQLDERIPAVLTALFTRELNADEVISQIARITGWKPSSGDLKEVLKALGGLQSTVSPEHSQDDGEQARLKAARVKMQNLI
complement(42353..42547)           hypothetical protein; CEP98_25570                                                    N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMHPQFLVWCLTFGAQFKNDGHYFCRAGGNRPDGLNEPVTHYPEIWLHMWESPSFRVRSCQPALH
42546..43891                       PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: methyltransferase type 11; CEP98_25575; phage(gi100001)     7.57e-95            SalmonellaentericasubspentericaserovarTyphimuriumMEKFSLEFKKVVSEKYLEGELSLKSVARMYGISPCTVRKWAYAYREHGISILTGKKGRYSAELKLTVVKEVVDDCFSVREVAVKHGIPAFGTVCNWLEKYRKYGEDAFIRKNKKSIPVPDKSAISAPPLPTLTKDEREELEQLRVENAYLKKLKALVQQKTLLNVQEKVSIVNELRQEWPLSRLLIVSGLPRSTFYYHVRRLAAPDRYQSARALVLKIYHQHKGRYGYRRIRLACRNEGVLLNGKTVRKLMKELGISSLIRVKKYRSYKGEQGRICDNLLKRNFDAKRPNEKWVTDVTEFKVNGKKLYLSPIMDLYNGEIISYNLATRPQPSMVQTMLTDALKQLSKDEHPILHSDQGWQYQMSRWQRWLKDSGIVQSMSRRGNCLDNAVIESFFGTLKSECYYLNEYKNVEDLKRDIIDYINYYNQLRIKEKLGGLSPVQYRLSQAA
43939..44586                       PHAGE_Escher_SH2026Stx1_NC_049919: hypothetical protein; CEP98_25580; phage(gi100016)     2.98e-23            SalmonellaentericasubspentericaserovarTyphimuriumMKHRTWITEALRLHFEEHLPRVVAGRRLGVPKSTVCSMFVRFRRAGLSWPLPAGMSEQELDACLYGQFSTVPVVRPESTVISEAPMVKKRPRRPNFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNWRHQYRKGGLLPSGKNMPALLPVTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLRLKGKLTPALLQTLIREIKGSSH
44586..44933                       PHAGE_Escher_SH2026Stx1_NC_049919: hypothetical protein; CEP98_25585; phage(gi100015)     5.97e-57            SalmonellaentericasubspentericaserovarTyphimuriumMISLPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLFIFRGRRGDQIKVLWADSDGLCLFTKRLERGRFVWPVTRDGKVHLTPAQLSMLLEGINWKHPKRTERAGIRI
44953..46524                       PHAGE_Escher_SH2026Stx1_NC_049919: hypothetical protein; CEP98_25590; phage(gi100014)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMDTSLAHENARLRALLQTQQDTIRQMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETLGEQYDPVLPSALRQSSARKPLPASLPRETRVIRPEEECCPACGGELSSLGCDVSEQLELISSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQSEIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSAEQRLAARKARAAPLMQSLYDWIQQQMKTLSRHSDTAKAFAYLLKQWDALNVYCSNGWVEIDNNIAENALRGVAVGRKNWMFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSSQ
complement(46445..46663)           PHAGE_Sodali_phiSG1_NC_007902: ImpC protein; CEP98_25595; phage(gi89886014)          9.86e-05            SalmonellaentericasubspentericaserovarTyphimuriumMIRIEILFDRQSTKKLKSGTLQALQNEIEQRLKPHYRKRLVRTVLIFTESSDQLSRATDRVPGLPASPGYVQ
46774..47043                       hypothetical protein; CEP98_25600                                                    N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMWLYACCGLLCPAYPQHFVHGSVDKIPGYPGRAGTLTGLHPMQVCRCRRPPHTVTFRRSSSTRCGFGAAPAFVCGRPVTGAARPDGGRM
47012..47983                       DUF1281 domain-containing protein; CEP98_25605                                       N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMRHGLMEAACERRIPMPNWCSNRMYFSGEPAQIAEIKRLASGAVTPLYRRATNEGIQLFLAGSAGLLQITENIRSEQCPGVTAAGRGAVSTENIAFTRWLTHLQNGVLLDEQNCLMLHELWLQSGTGQRRWEGLPDDVRETITVHFTAKRGDWCDIWGSEDVSVWWNRLCDNVVPEKTMPFDLLTVLPTRLDVEVNGFNGGVLNGVPSAYHWYTERYGVKWPCGYDLNISSQGDNCIQVDFDTPWCQPESDVVAALSRRFGCTLEHWYAEQGCNFCGWQLYERGELVDVLWGELEWSSPTDDDELPEVTGPAWIVDKVAHYGG
47987..48291                       hypothetical protein; CEP98_25610                                                    N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMTETGGQPPVSFPTKDVAVLLCLLRRLMRRGINAACGQCPASGGHGTGAFTAPGWRRQCTPACRPFLMNALQAAFAAYSRRQKDDGCDIPRSAPVTGRGGA
48368..49051                       PHAGE_Faecal_FP_Mushu_NC_047913: hypothetical protein; CEP98_25615; phage(gi100026)     1.04e-31            SalmonellaentericasubspentericaserovarTyphimuriumMSRFVLGNCIDVMARIPDNGIDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYVLAKGRPALPQKPLPDVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAVQRAMQQGAANDDWFMPEAA
49052..49273                       PHAGE_Entero_N15_NC_001901: gp50; CEP98_25620; phage(gi9630517)                      1.83e-07            SalmonellaentericasubspentericaserovarTyphimuriumMNYAGHEKLRAEVAEVANAMCDLRTTMNEMERRYSFNADTLPERLVRQTLFRANRLLMEAYTEILELDSCFKD
61800..61813                       attR                                                                                 N/A                 CGCCGGAACGGATT

#### region 2 ####
53597..55645                       PHAGE_Gordon_Hedwig_NC_031099: tail tip protein; CEP98_25670; phage(gi100054)        2.04e-06            SalmonellaentericasubspentericaserovarTyphimuriumMPSGISGFLSKRGAGRANVRQDISNYKGMIMPVTKCEPETTRKASRKSAKTQETVLSALLAQTEEVSVPLASLIKSPLNVRTVPYSAESVSELAESIKGVGLLQNLVVHALPGDRYGVAAGGRRLAALNMLAERNILPADWPVRVKIIPQELATAASMTENGHRRDMHPAEQIAGFRAMAQEGKTPAQTGDLLGYSPRHVQRMLKLADLAPVILDALAEDRITTEHCQALALENDTARQVQVFEAACQSGWGGKPDVRVIRNLITESEVAVAGNSKFRFVGADAFSPDELRTDLFSDDEGGYVDCVALDAALLEKLQAVAEHLREAEGWEWCAGRMEPVGECREDAGTYRCLPEPEAVLTEAEEERLNELMTRYDALENQCEESDLLEAEMKLMRCMAKVRAWTPEMRTGSGVVVSWRYGNVCVQRGVQLRSEDDAADDADRTEQVQEKASVEEISLPLLTKMSSERTLAVQAALMQQPDKSLALLAWTLCLNVFGSGAYSKPAQISLECKHYSLTSDAPSGKEGAAFMALMAEKARLAALLPEGWSRDMTTFLSLSQEVLLSLLSFCTACSIHGVQTRECGHTSRSPLDTLESAIGFHMRDWWQPTKANFFGHLKKPQIIAALNEAGLSGAARDAEKMKKGDAAEHAEHHMKDNRWVPGWMCAPHPQTDATERTDNLADAA
55700..56134                       conjugation system SOS inhibitor PsiB; CEP98_25675                                   N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMKTELTLNALQSMNAQEYEDIRAAGSDMRRNLTHEVMREVDAPANWMMNGEYGSEFGGFFPVQVRFTPAHERFHLALCSPGDVSQLWMLVLVNCGGQPFAVVQVQHIFTPVAISHTLALAATLDAQGYSVNDIIHILMAEGGQA
56131..56850                       plasmid SOS inhibition protein A; CEP98_25680                                        N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMSARSRALIPLSAEQQAAMQAVAVTEQRRRQGRTLSAWPYASAFFRCLNGSRRISLTDLRFFAPALTKEEFHGNRLLWLAAVDKLIESFGEVCVLPLPSDAGHRLFPSVPFREGERRRQKTTLTEQKYSRQREREAERRELEYQTCFAQAQIDLAFHTPATVGSWLSRWSGVVEEHDLETIFWGWCGRFPSLSSFDRFFWQEEPLWRLIFEAGEAGRGAPVQIRALEQWMIPNKLENAI
56980..58155                       PHAGE_Geobac_E3_NC_029073: transposase; CEP98_25685; phage(gi985758480)              2.46e-88            SalmonellaentericasubspentericaserovarTyphimuriumMLRATKIRIYPTPEQAAFLNAQFGAVRFAYNKALHIKKHAYQRHGVNLSPRNDLKPLLSVAKKSRKYAWLKEFDSMALQQAVINIDVAFSNFFNPKLKARFPTFKRKHGKQSSYHCVGIKVLDNAIKIPKLAPIEARLHRELHGKLKSITVTRSATGKYYASILCDDGASAPEKPTYLKEEKITGLDMGLEHYAITSDAVKVPNPRHLINVSRNLRRKQKALSRKQKGSANRKKARIRLAALHERVANARADFQHKLSRAIVDENQAVIVETLKTANMMKNHNLARAIGDAGWHSFITKLEYKAATKGVHLVKLDQWFASSKTCHCCGYKMPEMPLHKRIWRCPECGAEHDRDINAALNIRQKGILELKAAGLVVSAHGGQRKSVAQTVAA
58212..59102                       PHAGE_Rhodoc_Takoda_NC_048708: capsid decoration protein; CEP98_25690; phage(gi100066)     9.60e-09            SalmonellaentericasubspentericaserovarTyphimuriumMRRVLCTRRNKEVAGGSAFTRPCGAWPCGVSALWPQRRVRAVPCLHLSRAGRDARVRFAAAVTRSLLPVCRDFPVVRPLRFRGLTLQLPSAVCVRLRLPLRPCIPALSPGFYGGTAPPGVAEHVTMEDSGMSVVAPAVYVGTWHKYNCGSIAGRWFDLTTFDDERDFFAACRALHQDEADPELMFQDYEGFPGNMASECHINWAWVEGFRLARDEGCEEAYRLWVEDTGETDFDTFRDAWWGEADSEEAFAVEFASDTGLLADVPETVALYFDYEAYARDLFLDSFTFIDGHVFRR
complement(59242..59541)           hypothetical protein; CEP98_25695                                                    N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMAAEGLTAPSGAVALHTVRCAGSAVSGATGAARPERSLQAWFFRHRTVAAARNRASGFGGDWRVRQQLPVGVGPDDRMPPGSREPKVSPPPEIRTTETT
59563..59808                       hypothetical protein; CEP98_25700                                                    N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMDFPGAGVTTSRFSSPGEDIPSTKFLAINPAKNFASAPGQLPRDVVTDAPSERSTAGRNPEEVDGRRGFRPSGEQPVGPAT
59831..60265                       PHAGE_Yersin_fHe_Yen9_04_NC_042116: hypothetical protein; CEP98_25705; phage(gi100356)     3.90e-16            SalmonellaentericasubspentericaserovarTyphimuriumMTVSSTISVFCRDGVFRTVYCHLHGEPTWNGRILHTHYATGQQAEALVEHGDIRCLGPRCDKPAGHTLQNPVDGVTAYYGRDSGFRMDSEAREYRSFREAIATESTEEVRFHYVFIDGYWKVMYRTPEGWKMKALALALRRCPK
60359..60625                       hypothetical protein; CEP98_25710                                                    N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMRPSIIFATAEYVKRLREECLRENKPLHRHTRFRRQELAQDEINPDVLAMSGHIARRCSEQKRVRIPAMKVSEWGHLLRALEIERVCH
60690..61592                       PHAGE_Sodali_phiSG1_NC_007902: transposase; CEP98_25715; phage(gi89886005)           1.40e-96            SalmonellaentericasubspentericaserovarTyphimuriumMSKKKTTTTPTPHDAAFRSFLANPDVARDFLELHLPAEYRQLCDLSTLKLEPATFVEPDLHQYASDILWSVKTTGGEDGYVYTLIEHQSTENLYMPFRMLRYSVAAMQRHLEQHKTLPLVIPVLFYHGERSPYPYSMNWLDCFENPALAAKIYTNPFPLVDITVVDDNEIMNHRRMAALTLLMKHIRHRDMMELLDKLPQVMVEISDEQVRVLIHYIVNAGDSVSPEFMRALAERLPQHEDKLMTIAERLEQKGRQEGRMEGALEKALAIACQLQKMGMTPEQIKQATGLSDDELKKITH
61592..61873                       PHAGE_Sodali_phiSG1_NC_007902: transposase; CEP98_25720; phage(gi89886005)           6.03e-05            SalmonellaentericasubspentericaserovarTyphimuriumMRTAKPGKIPGFFASRSRENSMTLAERLIQKGFDEGFKEGFKEGFKEGFKKGALEVAREAACRLRDMGWTPERIQEATGLSGEELKKLFPDEQ
complement(61904..62155)           PHAGE_Erwini_PEp14_NC_016767: hypothetical protein; CEP98_25725; phage(gi374531851)     2.08e-06            SalmonellaentericasubspentericaserovarTyphimuriumMTGWELRIWRKSMLWSREKAAREFGVTQRTWHAWENAEQVDVTVWRTTQALSVRDLLPHMQGMRKADIIRRLENELGETAGNV
62396..62611                       hypothetical protein; CEP98_25730                                                    N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMCKATAPDGAAVSACLPPHCGLFSADGLSGGTYMTTSRFSRPGERCTSHKTFCRRRQKLLRLPPDNCPVTW
62736..63584                       PHAGE_Pseudo_phiPSA1_NC_024365: DNA restriction methylase; CEP98_25735; phage(gi658307732)     1.87e-16            SalmonellaentericasubspentericaserovarTyphimuriumMNQTLPTADLNTAGTTDVIPSVAIDRIIAQRNEGIALFMQAMECLATARKILLDASGDIFLYGFEDCVTDSVRRIDKPEEAKRNITRLADRKIWERLMTDTGMYTFMSSCQRDEWNSQLMSDTCPEITLDNVLATFRHLNACKMQTFEQGLIDVYRKLSWDYRTNNPCRLGKKIIIENLLYRWSNGRVTLDCSGREALDDLVRPFYLLEGRNVPDFRNSIGAQYGEFLGNGDNVGKLLEGEYFTVRGYQKGTVHIVFNRSDLVEKLNDIIARHYPGVLPPRV
