gi|00000000|ref|AAFJBQ010000011.1|  Salmonella enterica subsp. enterica serovar India strain 730964 81823, gc%: 51.29%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
complement(1..179)                 PHAGE_Entero_mEp390_NC_019721: putative holin; FI069_06200; phage(gi428782712)       3.51e-25            SalmonellaentericasubspentericaserovarIndiaMSEPVSSATVLAGGVMGASVFGLATGTDYGVVFGAFAGAVFYVATATNIGRIRLVAYFIT
363..545                           PHAGE_Acinet_YMC11/11/R3177_NC_041866: hypothetical protein; FI069_06205; phage(gi100075)     1.96e-05            SalmonellaentericasubspentericaserovarIndiaMKSTDLVKEMTAAGCEFKRHNGGSQQVWWSPITGKTFPVLHPKKDLPLGTVKFIKKLAGI
568..1000                          CopG family transcriptional regulator; FI069_06210                                   N/A                 SalmonellaentericasubspentericaserovarIndiaMFFSVGVETPKDENTAYGMFLPAFFSLRLQMFLRCYSRPDCPDGERRYPDSCRRLGSEQQCCCRRYQGCWLSGLFRCRIGLRQLGYGCFNRTQGTTAYYFAAHAAQTHRCRIKRCLPSPQPFHRSCAPRTAIA
complement(1240..2148)             PHAGE_Escher_SH2026Stx1_NC_049919: hypothetical protein; FI069_06215; phage(gi100042)     3.06e-40            SalmonellaentericasubspentericaserovarIndiaMTKLIFIMAVLLSGSVFANNLEFNLSFKDMQSYVKSLQGIREGLGHSMPNVVVEGTSVYQINAGATNDGVVITLEGLDHYGSETTSSVRFVLSPQNLYLTGFIYNRVYYHFRNEANITVGPDFADSTEAINLESDYTDLQRWSGLSRQGLVLSRGNLNSGLITLMSINPQSVTRAEAGTLLRFAHVIPEALRFRQIQRNVRTIFDLRPNVYSLSDSDIELTNSWEQLSQNFIHTTPGGQNAIRVGSIFLQNNNAILAALAMLAYCKSSTGNMSYSEGYCEAHSSKSYVVNGVVWDSKTLFFI
1912..1924                         attL                                                                                 N/A                 ATGATCCAGCCCC
complement(2454..2591)             PHAGE_Entero_phiP27_NC_003356: putative holin; FI069_06220; phage(gi18249892)        3.35e-18            SalmonellaentericasubspentericaserovarIndiaMSEPSSGSCTAVALGGATVFGLFTGMDFGIVFGAFAETLFVATMPQ
complement(2650..3075)             subtilase cytotoxin subunit B-like protein; FI069_06225                              N/A                 SalmonellaentericasubspentericaserovarIndiaMKNKLKVLTLALASLSSVCHAAMADYNDYTSEVHIKNLSYGVYRSGTKETQFFCIELKRGSEVLTVDTMCKIDVFGTHYQGFDNMLTTARYNYATGQSVRIYYKPDVWYDPDFKCGFSRNELIAITTCDSSGHCMGPEKTN
complement(3209..3857)             pertussis toxin-like subunit ArtA; FI069_06230                                       N/A                 SalmonellaentericasubspentericaserovarIndiaIILVFFSGYASAVNFLYRVGSRPLDVIFRNGFSSHGNNRNLQQPIRDDSCAAGSRDSNYIATTSDINENTECVQTIVSTVFHRLSLILYLVASSLVIFSELCGYKVCMPILSQLKIFRKQLRLFTTEIQVREVDLENQIPVIYEVHNILGNTQLTSITGKYPGKDCIWYFNQCFFNERSTKGCTILLNGFLRCAGSLTRSIELA
complement(4125..4679)             PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; FI069_06235; phage(gi169257243)     1.31e-85            SalmonellaentericasubspentericaserovarIndiaMTTQISVETLSPITHNQIPVITTELLAQLYGTKIKNISDNFLNNTTRFVVGKHYFKIEKNELREFKNRPETIGLVGKNARSLILWTERGAARHAKMLETDQAWEVFEKLEDCYFSQKNPSVRVSRQKSYDTRVLCYQQSGVTVSTIPLRDDDIVISLESWLELARANGWFVIRKDQLVERLMQL
complement(4676..4894)             PHAGE_Entero_VT2_Sakai_NC_000902: hypothetical protein; FI069_06240; phage(gi9633430)     1.22e-28            SalmonellaentericasubspentericaserovarIndiaMGVPDRNRDRHTPRACFFIVVCTRTSELWWAVWGHRKVRRLVSRLRQPCTVHHQTIGVVGGELFRNHSRASL
complement(4951..5505)             PHAGE_Salmon_vB_SosS_Oslo_NC_018279: antitermination protein Q; FI069_06245; phage(gi399528832)     5.78e-05            SalmonellaentericasubspentericaserovarIndiaMIYPTSTGKPGEYFRLNTLESVWIQGKLRMWGRWSYIGSGKPGNMFNQLLASRKLTKTAINEALRRLKKSGTSKPELEAFLREMMNGKQKSWLAHCTDSEAMLIDRVIGTVLAEYPALKKLIHQRYEGRGMSQRRMADLLNKQYPDWCYATCRNRIGVWLKMAEFMLYLPMREAFATDAHKIAR
complement(5502..5783)             PHAGE_Escher_HK639_NC_016158: hypothetical protein; FI069_06250; phage(gi356870664)     9.31e-44            SalmonellaentericasubspentericaserovarIndiaMKTCRSKKWLAAVGQIECCVLCGRWGTQVAHMNEGKGMGMKTDDCATAAICQECHHEIDNGSHLSREERRCLMNRAIVLTVIKLVRMGKVVPK
complement(5780..5974)             PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; FI069_06255; phage(gi169257247)     1.10e-15            SalmonellaentericasubspentericaserovarIndiaMRKTWFLHPNCTTEEAEELVKQYRRRGVKTERSLNHDCIHWTVSALLPEFGHVPVRRRACSYLK
complement(5971..6408)             PHAGE_Escher_HK639_NC_016158: NinB; FI069_06260; phage(gi356870662)                  3.73e-70            SalmonellaentericasubspentericaserovarIndiaMSIKFYLRDDRIRRNLIDYINSQPVNADFPLVVSFSDPKRTLPQNSLFHAICGDLANTRVQWAGSSWSIPSWKAILVSGHSVATGGQGKVIAGLEGELVPIRESTAAMGIKRMNSLIEYSQAFAVSQCIQLRDVRYSGDYFGRLV
complement(6582..6887)             PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; FI069_06265; phage(gi423262436)     2.04e-10            SalmonellaentericasubspentericaserovarIndiaMMIISSLLYIHGKDEVALKTLKSVIYGDTVKNSNKTFTCKYAVIRRDDMTVIAEMDFFPDCNRSLMYRDGRYVRFLPLLQNDIMGSDTLINELTIRAGYHE
complement(7082..7237)             PHAGE_Entero_933W_NC_000924: host killer protein; FI069_06270; phage(gi9632541)      1.67e-23            SalmonellaentericasubspentericaserovarIndiaMKQQKAMLIALIVICITVVMAVLVTRKDLCEVRIRTGQTEVAVFTAYESEE
complement(7441..7713)             PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; FI069_06275; phage(gi169257161)     3.04e-11            SalmonellaentericasubspentericaserovarIndiaMKIEYQEGGAESRLVITSGFLWWRKHIHLVDEILLRVPQLRAVSEGFFIVTTTVSGFTADVLRAEMIVEGMGDKVMNAEMIHNSCVEADK
complement(7710..8105)             PHAGE_Shigel_Stx_NC_029120: LygF; FI069_06280; phage(gi985761265)                    7.41e-23            SalmonellaentericasubspentericaserovarIndiaMGRNYTLAQKAEIQKRLTELVRTHGRMTFGELRKITGLTIFTARHYLEKAESCGDLYQAGRNGIFPSEQAFRLWKQKREDARINRFLKTPEGVVSSYDRTRNVICTECRNSVTMQRVLAFYRGNYQEAKSV
complement(8123..8875)             PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage DNA replication protein; DnaC homolog; FI069_06285; phage(gi169257254)     7.32e-98            SalmonellaentericasubspentericaserovarIndiaMKNIADSGILARIRKLAPQSAERAAPFRTPEEWREWQLAEGRRSCEEIDRQNRQARAEKIFGRAGIQRLHRGCSFANYRIQNDGQRHALSQAKSIAGELDTGCTNFVFSGNPGTGKNHLAAAIGNRLMNAGRSVIVITVADVMSALHASYDDGKSGEKFLRELCGVDLLILDEVGVQRETRNEQVTLNQIIDRRTASLRSVGMLTNLNHEALSKLAGQRVMDRMTMNGGRWVNFDWGSWRPNVSYLRAVK
complement(9802..10296)            hypothetical protein; FI069_06290                                                    N/A                 SalmonellaentericasubspentericaserovarIndiaMITPETASQALSSWLAYLQITQETATQLITRAFLEQPARPEIAVHRIERDDGTVDYDAWRRNRINIFQRWRKRETAEHCEKFSALIPAILEAIRKSAPELHKRITAGQSIEYLLSQLLKKPQWQARYFLARRWRILSGSVTRPYMRYRRYVAVIASSTRDMTSE
complement(10283..10537)           PHAGE_Entero_mEpX1_NC_019709: prophage antirepressor; FI069_06295; phage(gi428781916)     5.53e-25            SalmonellaentericasubspentericaserovarIndiaMNKISTYRKQLGLSQRQFATHLGWIQSRLANYEANFRTPGLEECRKIVATLNHLGSRCVLDDVFPPHVNDSRTILAKVNNHDHP
10634..11059                       PHAGE_Entero_mEp213_NC_019720: prophage repressor; FI069_06300; phage(gi428782641)     2.61e-18            SalmonellaentericasubspentericaserovarIndiaMRKENEKIAASRLNDEIAMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVYDAVVLGEALGISPPELLFGEKDSSQAWLSDHHKKLLELFNQLPSSEQQRMIDLFEVRLKEIDDYVETYLRNRLKNSTQPPEN
11370..11558                       hypothetical protein; FI069_06305                                                    N/A                 SalmonellaentericasubspentericaserovarIndiaMKMQELPVEVQAIAASTLRRKMKINDQRANKEPVEKLAHEVREAFTKLYLPVEVDPSQRGSG
11974..12822                       PHAGE_Salmon_118970_sal3_NC_031940: tail length tape-measure protein; FI069_06310; phage(gi100057)     4.07e-62            SalmonellaentericasubspentericaserovarIndiaMLNVAIENQNGWNYSASAPHKTGVGIATPNVIRAHNRASAVFLRAKHGLIRIMVGRMGPLSGGPGSRMTGCCNPVRLTTHEIATSRGELINLSYEAAIMATTPALSHPCVTIENGRAVTTSVAIAEFFRKMHKDVLKKIDNLECSTEFSERNFAPAEYTDEQGKKRPAYKITKNGFVFLVMGFTGKKAAAFKEAYIAEFDRMENELRQNNTPPHDKIIKGDGRTLVVHFDEHGNIKFTETAPEGAMFCTLDTFQFYLEQQGWTLINRKKIKSMTVEQLLSLK
12836..13120                       PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; FI069_06315; phage(gi169257260)     5.91e-11            SalmonellaentericasubspentericaserovarIndiaMIPVITPRSDWMRSPAKQQTAINRKPGLIRKIYTLLTQKGDPTLINCAYCQKAIPEETAYEYELIYMHGTLISRKKQKYCSKRCASHDQMAHEL
13195..13530                       hypothetical protein; FI069_06320                                                    N/A                 SalmonellaentericasubspentericaserovarIndiaMKNTTPDAAVLQELKELTSRIFKICEQNNMPVVIGYSYELSRNEDGYSINKSITAYADEKTGAWDSTIAAAAMLLKVKDVPREVIGALKSLSVASDFARAMSEASKEKSLH
13671..16361                       PHAGE_Erwini_phiEt88_NC_015295: exodeoxyribonuclease; FI069_06325; phage(gi327198600)     9.28e-95            SalmonellaentericasubspentericaserovarIndiaMSIKQEEYSFYYKVKNESARKRLGFKAGFFWCTAKKQSLALSRGELAMDAAGFDEADFARPVRVHFPVENDIPPEGVFDTKFCENREPGGEDGKTLTLIPGAASAVKSDETELADGAGTPAGENGIQESHNPPANPQLTVVATLPFRHRVLAQYIGDGEYLYHVDTGQKKEIACLEMDTQNTTVQNLILAAENVEPFKKAIEHDIHKAVNAYKQVFPVDGKVPELCTTIKFFKEWFSAEHINRGLLVKEWAERLKNKPAPVKKTGPHKVIVDDVNKPERPRRSEKPTHRTINYELACGFCEDLDLNNLRPAMDFAKRIIAEDREDWKRMSMTVGIIPDIKGYDRQTIIDLVRKAPKAVHNGNPDLRRTWCESFLAVHGVRDPDWYEYVPDNTPTTHEENAARLRQAGKCLRDIEAGRFQRDEEKPQSTGELADEPATPEAVEQDTTEHHPDPQPLENEPPVSQTEAGYQKIRAELHEARKNIPPKNPVDVGKQLAAARGEYVEGISDPNDPKWVHNNYSASNQGEKEEVVPEEKQPAAEPEAVTRNADGTFDVSALFPPPSNQTEKTEARTERDGETPKESNQQETAGDTGQEITTDGGSGTGGDEAGEAPDPVENGNFTVPDDIQPGIYYDIPNEAYHAGPGVSKSQLDDIADTPAIYLWRKNAPVDTEKTKSLDTGTAFHCRILEPEEFSKRFIIAPEFNRRTSAGKEEEKTFLEECARTGRTVLTAEEGRKIELMYQSVMALPLGQWLVESAGYAESSVYWEDPETGILCRCRPDKIIPEFHWIMDVKTTADIQRFRTAYYDYRYHVQDAFYSDGYRAQFGEIPTFVFLVASTTAECGRYPVEIFMMGEDAKLAGQREYRRNLQTLAECLNNDEWPAIKTLSLPRWAKENANA
16354..17184                       PHAGE_Salmon_epsilon15_NC_004775: RecT; FI069_06330; phage(gi30387413)               1.14e-105           SalmonellaentericasubspentericaserovarIndiaMPKQPPIAKADLQKTQGARTPTAVKNNNDVISFINQPSMKEQLAAALPRHMTAERMIRIATTEIRKVPALGDCDTMSFVSAIVQCSQLGLEPGGALGHAYLLPFGNKNEKSGKKNVQLIIGYRGMIDLARRSGQIASLSARVVREGDDFSFEFGLEEKLVHRPGENEDAPVTHVYAVARLKDGGTQFEVMTRKQIELVRAQSKAGNNGPWVTHWEEMAKKTAIRRLFKYLPVSIEIQRAVSMDEKETLTIDPADTSVITGEYSVVENAGVEENVTA
17231..17416                       DUF1187 family protein; FI069_06335                                                  N/A                 SalmonellaentericasubspentericaserovarIndiaMYKYRITAIVKKPGNSPTNWVRFSDKKMNKAECEIMLSGRTEAGKSREEKVTLEEFKCIKE
17707..17943                       hypothetical protein; FI069_06340                                                    N/A                 SalmonellaentericasubspentericaserovarIndiaMMDTRDLCPLCQKLHEAGEFIRVADYRKNSALPQPCLTEEQADRIRAAHWAGFTGRRAGDVKVLPGGGQQSFKFYPDH
18004..18276                       excisionase; FI069_06345                                                             N/A                 SalmonellaentericasubspentericaserovarIndiaMTMSFVRLETWGELNYPDDPPPLTTLRRWARNGNIYPTPVLHGRTYRVDPDAFYIKPNKVGLVLEQHHPNGRTGKKSALLERLINESKKV
18257..19336                       PHAGE_Entero_HK022_NC_002166: integrase; FI069_06350; phage(gi9634144)               5.32e-89            SalmonellaentericasubspentericaserovarIndiaMSQKKYDANLPKNLTYRKNDRAFYWRNPVTKKEIALGQIARRDAVAQAIEANNYIYQNYTPAALIEKLKRSDTFTVSMWIDRYDVLLKRRDLAANTYKIRGNQLATVREKMGEMILAEVTTRHIAEFLESWIAEGKNTMAGAMRSVLSDMFREAIVEGRITTNPVEPTRAPEIKVARERLQLETYNATRTAAEHLPVWFPLAMDLALVTGQRREDIVNMKFSDIVDGRLHVTQIKTGMKIAFPLSLTLEAPGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKKFVKARKISGVKFSDNPPTFHEIRSLAGRLYKDERGEEFAQKLLGHTSENTTKLYLDERDNKAYVML
complement(19710..20063)           PHAGE_Salmon_SEN1_NC_029003: hypothetical protein; FI069_06355; phage(gi971764937)     1.33e-11            SalmonellaentericasubspentericaserovarIndiaMKKILLPALLLATSGVALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGQALYVINPSTLVQYPLNAIAEQQVAEGKTRAQPIAVIQIDNPAKPGEKMSLAPFIERAQKLCDPSNS
complement(20080..20955)           copper homeostasis membrane protein CopD; FI069_06360                                N/A                 SalmonellaentericasubspentericaserovarIndiaMMLTFVWITLRFIHFASLMLVYGCALYGAWLAPAPIRRLMTRRFLHLQRHAAAWSVISAAFMLAIQGGLMGGGWPDVFSVSVWGAVLQTRFGAVWIWQIILALVTLAVVVIAPVKMQRRLLILTVAQFILLAGVGHATMRDGVAGTLQQINHALHLLCAAAWFGGLLPVVYCMRMAQGRWRQHAISAMMRFSRYGHFFVAGVLLTGIGNTLFITGFTAIWQTTYGQLLLLKCALVVLMVAIALTNRYVLVPRMRQENPRTDLWFVRMTQIEWGVGGIVLAIVSLFATLEPF
complement(20956..21330)           CopC domain-containing protein YobA; FI069_06365                                     N/A                 SalmonellaentericasubspentericaserovarIndiaMASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVSASPQALTLNFSEGIEPGFSGATITGPQQESIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWYVVSVDGHKTKGKYTFSVK
21468..21698                       PHAGE_Pectob_ZF40_NC_019522: putative DNA polymerase; FI069_06370; phage(gi422936677)     1.18e-22            SalmonellaentericasubspentericaserovarIndiaMKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK
21805..22461                       carbon-nitrogen hydrolase family protein; FI069_06375                                N/A                 SalmonellaentericasubspentericaserovarIndiaMSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPSLSLLGCDERNKPLPAPPDEALLQPLTHAADTHHMTIIVGMPVEHNCRFVKGIAIFAPWLTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIDPSFTLFTSSQCLNEPELHASTSRLQRFSHKYALAVLMANACGSSALWDESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR
22485..23183                       PHAGE_Yersin_fHe_Yen9_04_NC_042116: L shaped tail fiber protein; FI069_06380; phage(gi100273)     1.74e-17            SalmonellaentericasubspentericaserovarIndiaMLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPITPQAMAIHRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRTTGWTAEEMVNITGRPALLATFPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNMSPELRLTLKHYLEDVQAGEQRSNGTPQ
31371..31383                       attR                                                                                 N/A                 ATGATCCAGCCCC
