gi|00000000|ref|NZ_VCAR01000004.1|  Escherichia coli strain MA36 269927, gc%: 50.91%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
complement(1..410)                 PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; FE846_RS05335; phage(gi401817579)     2.26e-70            EscherichiacoliMHRGNFTAIGQQIQPYLENGKCFRMVLKPWREKRSLSQNALSHMWYSEISEYLISRGKSFATSAWVKDALKHTYLGYETKDLVDVVTGEITTIQSLRHTSDLGTGEMYVFLCKVEAWAMNIGCHLTIPQSCEFQLLR
complement(434..535)               hypothetical protein; FE846_RS05340                                                  N/A                 EscherichiacoliMRTYNPNSLLPSLMQKCTCGSLHPTFDLCGGEA
complement(626..907)               hypothetical protein; FE846_RS05345                                                  N/A                 EscherichiacoliVEDYLVFGLGYEGDIKNDEAGLDKISVVTKSVVRSTNSNEPVVYQVTEFKEFNVVRHQAFDSEYYNIAFDVLPSRVRIDAAIRKYHPKKSSSA
complement(951..1148)              hypothetical protein; FE846_RS05350                                                  N/A                 EscherichiacoliMSGCSVEVVNVNTTKEPVNVFYSRKDCEESMKNIMLNHALYHEVSGREPYMAKCEQVFVSKSLMK
complement(1376..1660)             PHAGE_Entero_BP_4795_NC_004813: putative Ren protein; FE846_RS05355; phage(gi157166013)     4.10e-61            EscherichiacoliMTGKEAIIHYLGTHNSFCAPDVAALTGATVTSINQAAAKMARAGLLVIEGKVWRTVYYRFATKEEREGKVSTNMIFKECRQSAAMKRVLLVYRT
complement(1657..2358)             PHAGE_Entero_BP_4795_NC_004813: putative replication protein P; FE846_RS05360; phage(gi157166012)     8.00e-172           EscherichiacoliMKNIAAQMVNFDREQMRRIANNMPEQYDEKPQVQQVAQIINGVFSQLLATFPASLANRDQNEVNEIRRQWVLAFRENGITSMEQVNAGMRVARRQNRPFLPSPGQFVAWCREEASVIAGLPNVSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELTCMTARINRGEAIPEPVKQLPVMGGRPLNRVQALAKIAEIKAKFGLKGASV
complement(2355..3374)             PHAGE_Salmon_SEN34_NC_028699: replication protein O; FE846_RS05365; phage(gi966201463)     2.90e-144           EscherichiacoliMTGSEMAKAGLLEQNRLSGANRNTLIAGGIMANTAEIFNFPVPDAAQKEPRVADLDDGYTRIANELLEAVMLAGLTQHQLLVFLAVMRKTYGFNKKLDWVSNEQLSELTGILPHKCSAAKSVLVKRGIFIQSGRNIGINNVVSEWSTLPESGKKNKVYLKEVNLPESGKKSLPKSGKGTYPNQVNTKDKLTKDNIKPYSSENSGESSDLPENDLPVVKADAAIQSGSKWGTAEDLTAAEWMFDMVKTIAPSARKPNFAGWANDIRLMRERDGRNHRDMCVLFRWACQDNFWSGNVLSPAKLRDKWTQLEINRNKQQAGVTASKPKLDLTNTDWIYGVDL
complement(3371..3910)             PHAGE_Entero_phi80_NC_021190: CII decision making protein; FE846_RS05370; phage(gi824479625)     2.88e-85            EscherichiacoliMQPLTYQQTSGFSPTAVINRSQIKQVPGHEKIRDAVRAWSAVDNQDVVATLIVNEYREQGGGTIDFPDDVSRTRQKLFRFLDNKFDSEKYRNNVRELTPAILAVLPLEYRGYLVEQDSFMARLAEMEKELSEAKQAVILNAPRHQKLKEISEGIVSMFRVDPELAGPLMAMVTTMLGAI
complement(3941..4163)             helix-turn-helix domain-containing protein; FE846_RS05375                            N/A                 EscherichiacoliMTNQTIQLAISITGSQKRLADLCGVAHCLALATRWRNCPLCNENCLSHWWKDTSRYSSRPCTIVREFCRLA
4274..4966                         PHAGE_Entero_ST104_NC_005841: CI; FE846_RS05380; phage(gi46358671)                   5.60e-144           EscherichiacoliMKKETLADRLNLAMEQSGMSQGALAKASGVAQPTIWRLTSGNARGSTKIVEIANALGVRTEWLSSGIGPMRNDGQQSGKPAVNHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVIGSMPQTYRKHG
5073..6680                         PHAGE_Lactoc_BK5_T_NC_002796: hypothetical protein; FE846_RS05385; phage(gi14251154)     1.71e-81            EscherichiacoliMDMSKKNFEFKNYPIVFIGSGISKRYLENYPTWEELLNEYWKITNPTNDFYSYLLTIKESHKNNSDNDIDHKIYTEAASKIENDYNLLFRTGKLKLNGLDAKRVFSEDISPFKYAICQRFSNNTIRKDVNLDELASFKTLIKKAKIIITTNYDAFIENLLQEQNVTPKLYIGNNGFFEDTIGWSELYKIHGDIKDPHSIIINKDDYEKYDNKSILISAKILSNMIKNPIVFLGYSLTDRNVKKLLSDFSSQLPREDGRKSAERIILIEYKENEQEVVPKQITDQQLQITYTSVKTDNYKQIYDEISAVDEGLSPYDVLRYQRAIKTLIINEGEKGHLDTLLVSPSDLDRLEESVKQGKNLVVALGDKKYVFTQVKEINYLEDYLFNKNEISNKLAIDFILGSVNSLQLPFSKTITSCNLKELSLPAKYVLKLNQRIERHGKLDDLLNKITLDKINANKIYTNIKDIKDATFKKYKELSIVIKNIKNIPKEEIEDYVKKEAFVQFKACDVDNLKTQYRKLFLAYDLLIHGNVEKIN
7184..7474                         PHAGE_Entero_HK225_NC_019717: Kil protein; FE846_RS05390; phage(gi428782413)         2.16e-35            EscherichiacoliMTTGGHPPPEYAQKSLYVQQPSLRAGVFMVHQHYGTQTVNRGAVMPGMLVKHKDGTWTASANLRGRLYLHRGIERTYTRDLLVEVFLDGRGNGLNR
7550..7846                         PHAGE_Entero_933W_NC_000924: host-nuclease inhibitor protein Gam; FE846_RS05395; phage(gi9632481)     5.96e-65            EscherichiacoliMNAYYIQDCLEAQSWARYYQQIAREEKEAELADDMEKGLPQHLFESLCIDHLQRHGASKKAITRAFDDDVEFQERMAEHIRYMVETIAHHQVDIDSEV
7852..8637                         PHAGE_Stx2_c_Stx2a_F451_NC_049924: hypothetical protein; FE846_RS05400; phage(gi100021)     0.0                 EscherichiacoliMSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTAYTAERQPERDITPVNDETMQEINTLLIALDKTWDDDLLPLCSQIFRRDIRASSELTQAEAVKALGFLKQKATEQKVAA
8634..9311                         PHAGE_Entero_YYZ_2008_NC_011356: putative exonuclease; FE846_RS05405; phage(gi209427739)     1.14e-169           EscherichiacoliMTPDIILQRTGIDVRAVEQGDDAWHKLRLGVITASEIHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYENDARTLFEFTSGVNVTESPIIYRDESMRTACSPDGLCSDGNGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKDAWYFANYDPRMKREGLHYVVIERNEKYMASFDEMVPEFIEKMDEALAEIGFVYGEQW
9311..9493                         PHAGE_Stx2_c_Stx2a_F451_NC_049924: hypothetical protein; FE846_RS05410; phage(gi100019)     3.73e-38            EscherichiacoliMKHPHDNIRVGTITFAYSVTKRGWVFPGLSVIRNPLKAQRLAEEINNKRGAVCTKHLLLN
9466..9657                         PHAGE_Stx2_c_Stx2a_F451_NC_049924: hypothetical protein; FE846_RS05415; phage(gi100018)     1.71e-39            EscherichiacoliMHKASPVELRTSIGMAHSLAQIGVRFVPIPVETDEEFHTLATSLSQKLEMMAAKAEANERDPA
9734..9949                         PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; FE846_RS05420; phage(gi157165994)     2.13e-47            EscherichiacoliMTPQQENALRSIARQANSEIKKARQQFPDKNVDDICRSVLKKHRETVTLMGFTPTHLSLAIGMLNGVFKER
10048..10269                       PHAGE_Entero_YYZ_2008_NC_011356: DksA-like zinc finger domain containing protein; FE846_RS05425; phage(gi209427736)     5.31e-47            EscherichiacoliMADIIDSASEIEELQRNTAIKMRRLNYQTVSATHCCECGDPIDERRRLAVQGCRTCASCQEDLELISKQRGSK
10290..11213                       PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; FE846_RS05430; phage(gi209427735)     0.0                 EscherichiacoliMREKAEKATKGSYIVGHTSVNQHGNLTGVFVCQKWKGEPGGVIAECHVNCLVETDVQAYANAEFIAAFNPNVALALLDERERNQQYIKRRDQENEEIALTVGKLRVELEAAKSKLNEQREYYEGVIADGSKRIAELEKQCAEWERKALSNFEECAAMAERIEEMQTKSAPDSFGIIGENIRTQDNRITSDPMFCVYQKREIAVDADYDHDRIVWVDEDGNEANKRHSRRLELLHENFREPPEKWRRVAVKDIDEFVTCCFTEQGCKDYLAVNGHNLRLPFIYVKSGFRNAEYIGIRNWLAGIRIKGE
11215..11391                       PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; FE846_RS05435; phage(gi209427734)     1.43e-37            EscherichiacoliMALTHRELCQIAYKFLKRNGFKVCFHDRFIAVTSTGEQPDAMGFRNSASCLIGEMFSC
11725..12081                       PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; FE846_RS05440; phage(gi209427732)     1.32e-81            EscherichiacoliMTTITDKELIKEIKERIGSLDVRDNIERRAYEIALASLEAEPIAWECGENIILFNPDTVEAYAKRAEISPKPLFSAPPALVVPDKLPREYRNGWPLAYSDYAEGWNDCREAMLQGDKS
12078..12440                       PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; FE846_RS05445; phage(gi209427731)     1.06e-86            EscherichiacoliMINRIKLEHILEYARQQRHIGQHCKIPPGDMVEIMEIAMRKAGNSPVTPDGWISCSERMPNDKQYVWCWGKSYGWTECDTFEGYYDCSRNKWWAVTDNGEEPASKVTHWMPLPEPPQEVK
12528..12770                       PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; FE846_RS05450; phage(gi209427730)     1.25e-52            EscherichiacoliMFALIQRGQIYTDRAGYPVVITRSTQHSVFFRRMDGRSGRVRIGEFNNLFEHIDQQEYRKILAGTEQEMRLKKLRAMQRR
12774..12908                       PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; FE846_RS05455; phage(gi209427729)     3.39e-26            EscherichiacoliMHTAFEFWVRKTFGNRYDLTRDVDGFYCREVVKRMFDVWCHCRG
12927..13181                       PHAGE_Entero_YYZ_2008_NC_011356: putative excisionase; FE846_RS05460; phage(gi209427728)     1.18e-57            EscherichiacoliMQTIIYQITPSKWCTERVLIASTGLKPGTIERARRKSWMQGKEYRHYAVEGDPGHYSECLYNIEEIMRWIENQKQPGAKNASSG
13215..14501                       PHAGE_Entero_YYZ_2008_NC_011356: putative integrase; FE846_RS05465; phage(gi209427727)     0.0                 EscherichiacoliMSNASYPTGVENHGGSLRIWFHYNGKRVRENLGVPDTAKNRKIAGELRTSVCFAIRMGSFDYAAQFPNSPNLKHFGLGKREITVKALSEKWLDLKKIEICANALNRYQSVIKNMLPMLGEKKLVSSITKEDLLFVRRDLLTGYQKLSNGKTSSIKGRSVVTVNYYMTTIAGMFQFATDNGYTSGNPFNGLAPLKKSKVKPDPLTRDEFIRFIEACRHQQTKNLWILAVYTGIRHGELVSLAWEDIDLKARTITIRRNYTKLGEFTPPKTDAGTGRTIHLVQPAIDALKSQAEMTMLGKQHSVEVKQREYGRTAVHKCTFVFSPQVTKQQQLSGPHYKVDSIRESWTSILKRAGLRHRKSYQSRHTYACWSLAAGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELLNKRLSESVPCMPHKKAG
14540..15223                       HTH-type transcriptional regulator MlrA; FE846_RS05470                               N/A                 EscherichiacoliPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDNGVQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSLRTWIKERGQDYPAQTLTTHLFIPLRRRLQYQQPTLQALLAILDGVLINYIAICLASARKKQGKDALVVGWNIQDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQGHDIFPLGI
15283..15390                       protein YohO; FE846_RS05475                                                          N/A                 EscherichiacoliMRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG
complement(15371..16102)           glycine betaine ABC transporter permease YehW; FE846_RS05480                         N/A                 EscherichiacoliMKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQESFAALALAHFWLVGISSLFAVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAVLAIAVPVIGFGLQPAIIALILYGVLPVLQATLAGLGAIDASVTEVAKGMGMSRGQRLRKVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGALLVALAAIIADRLFERLVQALSQHAK
complement(16107..17033)           PHAGE_Bacill_G_NC_023719: gp245; FE846_RS05485; phage(gi593777701)                   6.49e-29            EscherichiacoliMIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGELRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQLQKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGNPLTMLTRPANDFVRQFFGRSELGVRLLSLRSVADYVRREERAEGEALAEEMTLRDALSLFVARGCEVLPVVNTQGQPSGTLHFQDLLVEA

#### region 2 ####
246808..246819                     attL                                                                                 N/A                 AACGTCAACTCT
261315..262247                     PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; FE846_RS06555; phage(gi966197797)     0.0                 EscherichiacoliMDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHIRQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFHVELEGVPGSFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLMRLWGVVLLGNILGTGIAAWAFEYMPIFNEETRDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKAEARQKAERAENIKKNDKNPA
262323..262397                     tRNA                                                                                 N/A                 GTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCA
262559..263716                     PHAGE_Entero_VT2phi_272_NC_028656: putative integrase; FE846_RS06565; phage(gi966197798)     0.0                 EscherichiacoliMLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKRQVWSAAYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLAEAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMQWKNVDFENRIITIEASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKSICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDGKVE
complement(263891..265027)         PHAGE_Entero_IME10_NC_019501: gp20; FE846_RS06570; phage(gi422934289)                4.99e-80            EscherichiacoliMATWQQGINSGGFLAGIGGQNSNAPKASDVSEALAYIRQNNEMERSGRNNIGLQALQGLGSVAQTSQAAKQQEADAAFQKEYAAAIQSGDRQQVRDLMTKYPGQLEKIQSGMKWADEDQRNSIGTLAAGARLAASSPEAMQSWLQNNAKELARVGVDPNNVAQMYQQNPSGFGEFVYHLGMAALGPIDYFNVQDKMAGREIDRGRLAETIRSNQAGDFEFKSKPSYLVLSFAEISSVVFILMSVYMVAKSQNSNGLQYDALFIPSMAFSILVFSFNGGIISKIISNKVMILLGDASFSFYLVHTIVISTLSKFFNVSGLGAISVIKFIVMALFASLFISIMMYLFFEKPINNKLRKWWSGFKNDVSTTRVEKIEGNQL
complement(265037..265717)         PHAGE_Entero_IME10_NC_019501: DNA transfer protein; FE846_RS06575; phage(gi422934288)     3.05e-76            EscherichiacoliMLVLSESFKNKLLPMNGYMKGGSDSGSKAQARATEKGIELQREMWQTNMQNLAPFTPLAQQYVSQLQNLSSLQGQGQALNQYYNSQQYKDLAGQARYQSLAAAEATGGLGSTATGNQLAAIAPTLGQNWLSGQMNNYNNLANIGLGALTGQANAGQNYANNVSQLYQQQAAASAANANKPSGLQSFATGAIGGAASGAMIGSAVPVIGTGIGALAGGVIGGLGSLF
complement(265704..266171)         PHAGE_Sodali_phiSG1_NC_007902: hypothetical protein; FE846_RS06580; phage(gi89885999)     5.00e-82            EscherichiacoliMEIKLIDNPVKLAEFLNNPVNTGNIVDSGDKYYIKPDAVYLGIYEGLVLAGVHEVRNFWHSVVECHAVYDPGFRGEYALQGHRLFCKWLLENSPFLNSITMVPDTTKYGRAIIRLLGATRVGHLDDAYMSNGKPVGITLYQLPRSKYEELLNVST
complement(266171..266737)         PHAGE_Shigel_Sf6_NC_005344: gene 9 protein; FE846_RS06585; phage(gi41057287)         7.54e-122           EscherichiacoliMSPLHDVNPLIALNESDIASLDTRVQSLESQVSDHETRINALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGTLAPFFDTVNNKMVVFNENKTLFFKLSIVGTWPSGTANRSMQLTFSGSVPDTLVSSRNSATTTDNILLATFFSVDKDGFLATNGSTLTIQSNGAAFTATTIKIIAEQ
267815..267826                     attR                                                                                 N/A                 AACGTCAACTCT
