gi|00000000|ref|NZ_VCXL02000001.1|  Salmonella enterica subsp. enterica serovar Typhimurium strain 577194, gc%: 51.88%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
73999..74044                       attL                                                                                 N/A                 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA
complement(74059..75222)           PHAGE_Salmon_SPN9CC_NC_017985: integrase; FG605_RS00380; phage(gi389060492)          0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMSLFRRGETWYASFTLPNGKRFKQSLGTKDKRQATELHDKLKAEAWRVNKLGETPGMTFEEACVRWLEEKAHKKSLDDDKSRIGFWLQHFAGMQLKDITETKIYSAIQKMTNRRHEENWKLMDEACRKNGKQPPVFKPKPAAVATKATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAKRLIDECQEPLKSVVEFALSTGLRRSNIINLEWQQIDMQRKVAWIHPEQSKSNHAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANTAWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDSIFGTSVPNMSHSKNKEGTNNT
complement(75135..75449)           PHAGE_Entero_UAB_Phi20_NC_031019: tail fiber protein; FG605_RS00385; phage(gi100052)     9.63e-73            SalmonellaentericasubspentericaserovarTyphimuriumMESHSLTLDEACAFLKISRPTATNWIRTGRLQATRKDPTKPKSPYLTTRQACVAALQSPLHTVQVSAGDDITEELKCHYSAEVKPGTPVSHCRTAKDLSSLLGQR
complement(75452..75802)           PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; FG605_RS00390; phage(gi389060493)     4.02e-80            SalmonellaentericasubspentericaserovarTyphimuriumMSDLAMKVLRWQTKGHVGISSATMASIALGLEKNFYHGRFDAPRDPADLRRCMMLVDEIPEIKDSFPLIAKKVKRFSPILREWDSLIALLKLELKRPDKRAPKTYKWIEELLSDQE
complement(75873..76541)           PHAGE_Salmon_SPN9CC_NC_017985: Eaa protein; FG605_RS00395; phage(gi389060494)        1.90e-166           SalmonellaentericasubspentericaserovarTyphimuriumMTTITKERIELFVKSPLENGLTRGEQMELARIALVSLTAEPVAWMCEDEEGREYNSSNEFSCGRFGVPLYASPPAPVVPEDISGIIERFQYQADHLSDWRHIDEHSCKVNRRDLMTALEFMDSCRAAMLQGKFRDLSQPVDPQVADYEKTMLQAGNSPVTPGGWISCSERMPAQDDWVLIYSKYGEYLAGQVQGEYVELNDGTLSWLGAALHWMPLPEPPQQ
complement(76545..76733)           PHAGE_Salmon_SPN9CC_NC_017985: EaI protein; FG605_RS00400; phage(gi389060495)        6.32e-37            SalmonellaentericasubspentericaserovarTyphimuriumMKMGEHMEPVIELLEELNGNDADAKLKLLALVISEYMLNADVTGFEVSAGRMKVAVDISVED
complement(76856..77143)           PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; FG605_RS00405; phage(gi389060497)     1.18e-63            SalmonellaentericasubspentericaserovarTyphimuriumMKLNIDLGKYVITGTKHDLILNEKRKVTDEKSKNFGNEVLVRCGYYSKFEHLVKELCHREILASEAQSFQELQKHIESLGLTLSKAVNSFVGENA
complement(77154..77447)           PHAGE_Salmon_SPN9CC_NC_017985: anti-RecBCD protein 2; FG605_RS00410; phage(gi389060498)     1.10e-67            SalmonellaentericasubspentericaserovarTyphimuriumMPAPLYGADDPRRCSGNSVSEVLDKFRKNYDLIMSLPQETKEEKEFRHCIWLAEKEERERIYQTSIRPFRKATYTQFIETDPRLRDYRSRYGAISNN
complement(77494..77778)           PHAGE_Salmon_SPN9CC_NC_017985: Abc1; FG605_RS00415; phage(gi389060499)               4.20e-64            SalmonellaentericasubspentericaserovarTyphimuriumMRRLNITPAEMESVCGRMVACRAAEHLGLNINQFYYIAKKLSLKTAFVKPRWSENEDKKMQALISSGYTQRNVAKILGRSEESVKSRLSRLRKK
complement(77778..78485)           PHAGE_Salmon_SPN9CC_NC_017985: putative Erf recombination protein; FG605_RS00420; phage(gi389060500)     2.32e-176           SalmonellaentericasubspentericaserovarTyphimuriumMDLNKFDAPFNPEDIEWRIQRSGKMHDGKVWALVLAYVTNRAIMKRLDDVCGKAGWRNEYRDIPNNGGVECGISIKIGSEWVTKWDAAENTQVEAIKGGRSGAMKRAAVQWGIGRYLYNLEEGFAQISNDKKQGWHRAKLKDGTEFYWLPPSLPGWAIPASGNQPSPENTNQKSPSVDCEQILKDFSEYAVTETDKKKLIERYQHDWQLMAGHEDAQAKCVQVMNIRINELKQVA
complement(78767..78937)           PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; FG605_RS24960; phage(gi100014)     1.22e-34            SalmonellaentericasubspentericaserovarTyphimuriumMQQFAIAGAASVRPFNPILSVQHSRKNILTGADFKQPRMKSLLEKLWDILKQQGRP
complement(79177..79542)           PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; FG605_RS00435; phage(gi389060503)     2.66e-81            SalmonellaentericasubspentericaserovarTyphimuriumMEEQANKILVELLQKASNGIDAAVSFSQAQIPDVIHQLLMWHAVSSAGIQAICVLVIIACVYLMIFAWNKGDDADIVLLSLLVTSGIAITSIVVFFNYFDWLKIWLAPKLYLIEYAASLVK
79686..80264                       PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; FG605_RS00440; phage(gi100016)     2.65e-141           SalmonellaentericasubspentericaserovarTyphimuriumMNNSWWQELMHFFLQGMTLKQLIHMLIILILLIVVMPVSVKEWVNLHNPEILPQYWMYYILLFCVSYVLNGVVNSVYHAVNERIEASTAQQRKAREEKVVRDLFDSLTPGERAYLAFAVAANNQLKTEKGSPESISLLEKGLITRLPSVIGYPDIDRFVIPEKYFNECYMRFAGKSDILMNELIAQDEQLKK
complement(80285..80668)           PHAGE_Salmon_SPN9CC_NC_017985: anti-termination protein N; FG605_RS00445; phage(gi389060505)     2.07e-89            SalmonellaentericasubspentericaserovarTyphimuriumMTRRTQFKGTSRARRRERLKAKALANGVLAREEAITSEVLHRPTLSRAQIQAKGKHETPKRIEDAKSLQFMAKDAFWQLEEYRRNLERAAIVYANEFGHKPPETGVCLPDVALYAAGHRKSKQITAR
81000..81203                       PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; FG605_RS00455; phage(gi100018)     2.07e-39            SalmonellaentericasubspentericaserovarTyphimuriumMKSEDEFFAELHPQVVEVLGTALMQVLVEQREPSREALIEMIQVLWQEEDVDLAVELAIDVLTLPKE
complement(81242..82321)           PHAGE_Entero_ST104_NC_005841: ORF23; FG605_RS00460; phage(gi46358670)                0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMQAHFTTKSACIMSDKESKEPTGKSKGGVARANALSAEERSAIARKAAAARWGGDGEVEIAKRSGDIVIGDLKIQCAVLEDGTRVLSERAITKAFGGKRGGSHWKRMKENPDGAYLPVFLSAKNIKPFINNELSEGLSRRRLFKINKGAAPAYGIEASLLPKICNVYLKMRDQGDALQSSQIPISVQADIIMRGLAEVGIVALVDEATGHIDEKRQDEYRILFQEFIKEQVREYEKEFPKQFTDGLYRLYGLTQKKAGRHPQFFGKFTRKYIYEPLASSKGAILEMLDEKNPVVYANGGRRYKMFQFLTDSIGVPMFRAHLWQVVGILSSSRNKAEFDRAFKRAFPSPGTQFELLDEDE
complement(82455..83108)           PHAGE_Salmon_SPN9CC_NC_017985: CI protein; FG605_RS00465; phage(gi389060508)         4.19e-162           SalmonellaentericasubspentericaserovarTyphimuriumMNWYDIAKQRIDQLGLNQDKVAEHLGVTKGAVSHWLNGRRNPSIQEIGAIFQYLGVTDVRFNADGTFSVGESTEQKPVKPQFEYPFFSHVQAGMFTPEFRTFTERDAECWISTTKKASDSSFWLEVEGHSMTAPAGSRPSFPEGMLILVDPEVPVDPGDFCIARLCGDEFTFKKLIKDSGQVFLQPLNPQFPIMPCNEQCRVVGKVVASQWPDEIFG
83218..83427                       PHAGE_Salmon_SPN9CC_NC_017985: Cro; FG605_RS00470; phage(gi389060509)                9.73e-46            SalmonellaentericasubspentericaserovarTyphimuriumMNNIRNFRERFGLTQEDLAKVLGCTRGAVCHYETGRRGMDINLCRAFINAFKEYGYELTIDDLFPPKAA
83561..83851                       PHAGE_Salmon_SPN9CC_NC_017985: CII protein; FG605_RS00475; phage(gi389060510)        7.09e-65            SalmonellaentericasubspentericaserovarTyphimuriumMELTNHSKKIREVETELRARLVSMGQTNFAKMAGWSDSKVSRLNIQDMAVTFVLLEKVWETSLIREVARQAVEAVMPRNKKRPAATERSDQIQMDF
83872..84033                       PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; FG605_RS24965; phage(gi100022)     1.35e-31            SalmonellaentericasubspentericaserovarTyphimuriumMTKRSKKYQEKEEIRHPDSPEGLVVAAANNRAFAERLVGVYRLAKAGVKHGRR
84020..84841                       PHAGE_Salmon_SPN9CC_NC_017985: bacteriophage replication protein O; FG605_RS00480; phage(gi389060512)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMGVVKLADYRPHLEVVEHRVADTEDGFMRVANEITDSLLMADLTVRQLKVMLAIMRKTYGFNKPMDRLTNTQIAAMTGIHHTHVCAAKRQLIERKFLIADGVKIGVNKVVSQWISQDSLTLAKTANKTLAKSANGYKPSQLNTKDNIQKTINTNTPLPPNGGGDGQVKPERRKAERIDYESFLNAYNTEVGDRLPHAVAVNEKRKRRLKKIIPQLKTPNVDGFRAYVRAFVHQAKPFYFGDNDTGWTADFDYLLREDSLTGVREGKFADRGIA
84838..86214                       PHAGE_Salmon_SPN9CC_NC_017985: replicative DNA helicase; FG605_RS00485; phage(gi389060513)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMRQDIEASVIGGLLIGGLTPTASDVLATLEPEAFSIPLYRKAFEVIRKQARNRNLIDGLMVAEECGDEYATAVMMTARSCPSAANLKGYAGMVADSYQRRQVLQLLDEMREPISNGTLDASGRAMDDLVKRLSAIRKPRDEVKPVRLGEIINDYTDTLDRRLRNGEESDTLKTGIEELDAITGGMNAEDLVIIAARPGMGKTELALKIAEGVASRVIPGSGVRRGVLIFSMEMSAIQVVERGIAGAGMMSVSVLRNPSRMDDEGWARVASGMKLLADLDVWVVDASRLSVEEIRSISERHKQEHPNLSLIMADYLGLIEKPKAERNDLAIAHISGSLKAMAKDLKTPVISLSQLSRDVEKRPNKRPTNADLRDSGSIEQDADSIIMLYREAVYDENSSAAPFAEIIVTKNRFGSLGTVYQRFCNGHFVACDQDEARQICTASNAPAGRRKRYAQGADV
86287..86493                       PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; FG605_RS00490; phage(gi389060515)     6.18e-41            SalmonellaentericasubspentericaserovarTyphimuriumMVNWMLAAIKCIGVGWILLTFFIVLRNYISLVNGGKDPFSTLFGAAFVWVLIGIVPVAIAKMAWRFIN
86508..86705                       PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; FG605_RS00495; phage(gi389060516)     6.25e-40            SalmonellaentericasubspentericaserovarTyphimuriumMSTVEQLLNADMKEAAARKKQYMSSSNLPLLEKVAAYPRPKKSPRDRVLRRILSMKLDAIFVNFM
86966..87229                       PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; FG605_RS00500; phage(gi389060517)     2.70e-57            SalmonellaentericasubspentericaserovarTyphimuriumMDESRKQFLEWWRHPEQEELRISCAEGWGEKIWSASRSAIAIELPAKNDISSDDYSIPDLVDWGDGRNAGIQECAEAIRAAGIKVKE
87454..87891                       PHAGE_Salmon_SPN9CC_NC_017985: recombination protein NinB; FG605_RS00505; phage(gi389060519)     1.15e-103           SalmonellaentericasubspentericaserovarTyphimuriumMKKLTFEIRSPAHQQNAIHAVQQILPDPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVEWHGRWLDAESWKCVFTAALKQQDVVPNLAGNGFVVIGQSTSRMRVSEFAELLELIQAFGTERGVKWSDEARLALEWKARFGDAA
87888..88061                       PHAGE_Entero_UAB_Phi20_NC_031019: hypothetical protein; FG605_RS24970; phage(gi100006)     9.16e-37            SalmonellaentericasubspentericaserovarTyphimuriumMKHCYRCGESKDDYRFRPNQPYWHQWCIRCERSPVGNFPLPETKEDVWHNSDEVSPT
88028..88204                       PHAGE_Salmon_SPN9CC_NC_017985: NinE; FG605_RS00515; phage(gi389060520)               1.04e-36            SalmonellaentericasubspentericaserovarTyphimuriumMAQQRRSITDIICENCKYLPTKRSRNKPKPIPKESDVKTFNYTAHLWDIRWLRERARK
88207..88548                       PHAGE_Salmon_SPN9CC_NC_017985: NinX; FG605_RS00520; phage(gi389060521)               2.07e-81            SalmonellaentericasubspentericaserovarTyphimuriumMDYSQLSDFEINRMVGDIIFKGLWACKPETSGNNTNKWYYGNADTTFEPLNHLPDYCNDPSASWPIIEKHRISILDQLTEWCVDANGVSPIFDTRPLRAAMIVFLMMQDANNA
88541..88717                       PHAGE_Salmon_SPN9CC_NC_017985: NinF; FG605_RS00525; phage(gi389060522)               9.26e-36            SalmonellaentericasubspentericaserovarTyphimuriumMLSPSQYLQYQKESVERALTCANCGQKLHVLEVHVCEHCCAELMSDPNSSMYEEEDDE
88710..88979                       PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; FG605_RS00530; phage(gi389060523)     6.44e-61            SalmonellaentericasubspentericaserovarTyphimuriumMSDLSELISFKKDREEMRTESVYYVQHRNKRSVLDQELVITGDLSFRTYKASMEMKDFPKCGSEREAALKLAEWMQRMAAAIENYWSEP
88979..89269                       PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; FG605_RS00535; phage(gi389060524)     1.27e-66            SalmonellaentericasubspentericaserovarTyphimuriumMANLRKEARGRECQVRIYGVCNGNPETTVLAHYRMAGICGTGMKPDDLIGAWACSACHDEIDRRTHNLDNKDARLYHLEGVIRTQAILLKEGKIKS
89266..89661                       PHAGE_Salmon_SPN9CC_NC_017985: endodeoxyribonuclease; FG605_RS00540; phage(gi389060525)     3.91e-93            SalmonellaentericasubspentericaserovarTyphimuriumMKTYRIKLPWPPSNNRYWRHSRGIHYISDWGKRYRREVIEIIQQQQLDLKITPRIRITILAAPPDNRKRDLDNLPKAVFDALTSAGFWLDDGQIDDMRIKRCQAVKGGMLVLVVTETCWRLPMITELLEAA
89658..90227                       PHAGE_Salmon_SPN9CC_NC_017985: putative HNH endonuclease; FG605_RS00545; phage(gi389060526)     1.32e-137           SalmonellaentericasubspentericaserovarTyphimuriumMSECIIWKGRVKNGYGWRTWRRQTTTAHRIEYCIAKGIALADIEGMIIRHQCDNPLCINPDHLVVGTQQQNVNDMYERHRECRKIPLEIISAIKNEYVKGSSTHGSPALAKKYGVSQPHVSQIINGTALSGSSISDYVSAFGDRKMISEWAKDERCTVTAKTILRRILSGIPPEQAISSKRRPDIREAA
90224..90427                       PHAGE_Salmon_SPN9CC_NC_017985: NinH; FG605_RS00550; phage(gi389060527)               1.42e-43            SalmonellaentericasubspentericaserovarTyphimuriumMTHTIKTIPDMLIETYGNQTEVARRLSCHRNTVRRYLYDKEARHHAIVNGVLMIHQGGRGIYDRNQH
90408..90587                       PHAGE_Salmon_SPN9CC_NC_017985: NinZ; FG605_RS00555; phage(gi389060528)               1.08e-36            SalmonellaentericasubspentericaserovarTyphimuriumMTVTSINQAKQQSERDEAELRSVREMTEQHQKAMDYLHERERELVNRLGLNKPAGGDAA
90584..91102                       PHAGE_Salmon_118970_sal4_NC_030919: putative phosphoesterase; FG605_RS00560; phage(gi100037)     9.27e-127           SalmonellaentericasubspentericaserovarTyphimuriumMSIRELNLTKEQHDWLNGWLELWGAWVYSGRLEKRMSSVIAKFMESVEPGRVMTRPMCNDDDGMLISQVVDSVMYIDKKAFGILLSYYAHGSSKRAIASYYHATAKPRKMCGRGGDGWRKPSLATCRNEIDDILKASLFVLYQPMQNAFKMRKRVEKVKHVAVKSLDMQLSI
91164..91239                       tRNA                                                                                 N/A                 TGGGTCAGTCGTATAAAGGTCATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGAGTCCACGCTGTCCAGCCA
91245..91320                       tRNA                                                                                 N/A                 GCTGGTTTAGCTCCAATGGTAGAGCAGTCGCCTTGTAAGCGAATGGGTAGCGGTTCAAGTCCGTTAACCAGCACCA
91566..91769                       PHAGE_Salmon_SEN22_NC_028696: class II holin; FG605_RS00575; phage(gi966201365)      9.81e-43            SalmonellaentericasubspentericaserovarTyphimuriumMYRMDKIREWFSYSFGGLTAMGGILSLNDWAVIIGILCTVGTFGINWYYKRKEREDRLNGNVTGTTK
91747..92244                       PHAGE_Salmon_SPN9CC_NC_017985: phage lysozyme; FG605_RS00580; phage(gi389060531)     4.68e-119           SalmonellaentericasubspentericaserovarTyphimuriumMSPALRNSVIAAISGGAIAIASVLITGPGGNDGLEGVRYKPYKDVVGVLTVCYGHVGKDIMLGKTYTEAECEALLNKDLATVARQINPYIKVDIPETTRGALYSFVYNVGAGNFRTSTLLRKINQGDIKGACDQLRRWTYAGGKQWKGLMTRREIEREVCLWGQQ
92241..92708                       PHAGE_Salmon_SPN9CC_NC_017985: endopeptidase; FG605_RS00585; phage(gi389060532)      3.78e-110           SalmonellaentericasubspentericaserovarTyphimuriumMSRVTAIISALVICIIVCLSWAVNHYRDNAIAYKEQRDKKVSELKQATATITDMQQRQRDADALDAKYTKELADAKAENDALRRKLDNGGRVLVKGKCPVPSSAETSSASGMGNDATVELSPVAGRNVLGIRDGIIRDQTALRTLQEYIVTQCLK
92921..93607                       PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; FG605_RS00595; phage(gi389060533)     1.56e-169           SalmonellaentericasubspentericaserovarTyphimuriumMQLVEIKKLDLVTNSAVIATGVKKDHKPVIQLIRKYKSDLEEFGRVEFEMRPFQTDGGMQKQEIALLNEQQTTLLITYMRNNEVVREFKKRLVAEFFTMRSALAKKKMDRNSARLEYKPMTDAIKHEREAQGKQIAPHHFSNEADLINRLALGMTAAKFRVHHEIGKKEPIRDYLTPEQIHCITELQRANTVFISMGWDFEQRKEVLRGMFERNHRQPLIEEQHRLAA
93918..94160                       PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; FG605_RS00600; phage(gi389060534)     1.54e-48            SalmonellaentericasubspentericaserovarTyphimuriumMAEITALTELQQMNLDILRLVQSDTAAAEKAIAFVAGSKLNFELFKDQLVLAQGEGTALARAEKAIREAKEALDLFTAGV
94163..94567                       PHAGE_Salmon_SPN9CC_NC_017985: decoration protein; FG605_RS00605; phage(gi389060535)     2.56e-92            SalmonellaentericasubspentericaserovarTyphimuriumMANPNFTPSWPLYKDADGAYVSALPIKAIKYANDGSASAEFDGPYADQYMSAQTVAVFKPEVGGYLLRSQYGELLYMSKTAFEAKYTSASGSVTNADTADKLSTARTITLTGAVTGSTSFDGSANVTIATTQGS
94571..95059                       PHAGE_Salmon_SPN9CC_NC_017985: terminase small subunit; FG605_RS00610; phage(gi389060536)     1.27e-118           SalmonellaentericasubspentericaserovarTyphimuriumMAAPKGNRFWEARSSHGRNPKFESPEALWAACCEYFEWVEANPLWEMKAFSYQGEVTQEPIAKMRAMTITGLTLFLDVTLETWRTYRMREDLSEVVTRAEQIIYDQKFSGAAADLLNANIIARDLGLKEQSQVEDVTPDKGDRDKRRSRIKELFNRGTGRDS
95037..96536                       PHAGE_Salmon_SPN9CC_NC_017985: terminase large subunit; FG605_RS00615; phage(gi389060537)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMELDAILDSLSDEEQIELLELLEEEENYRNTHLLYEFTPYSKQREFIDAGHDYPERCFMAGNQLGKSFTGAAEVAFHLTGRYPGTKGYPADGKYGGEWKGKRFYEPVVFWIGGETNETVTKTTQRILCGRIEENDEPGYGSIPKEDIISWKKSPFFPNLVDHLLVKHHTADGVEDGISICYFKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKDADTIYVSRVWKAKEKTAVQAWGAVKSWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELRDMMLDGRFKVFNTCEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRDIKKPKEKKIPAPIRPIARRT
96537..98711                       PHAGE_Salmon_SPN9CC_NC_017985: portal protein; FG605_RS00620; phage(gi389060538)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMADENRLNSILCKFDADWMASDEARREAKNDLFFSRVSQWDDWLSQYTTLQYRGQFDVVRPVVRKLVSEMRQNPVDVLYRPKDGASPDAADVLMGMYRTDMRHNTAKIAVNVAVREQIESGVGAWRLVTDYEDQSPTSNNQVIRREPIHSACSHVIWDSNSKLMDKSDARHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTIQIAEFYEVVEKKETAFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHIPIVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHMYDGNDDYPYYLLNRTDENNGEMPTQPLAYYENPEVPQANAYMLEAATSAVKEVATLGVDAEAVNGGQVAYDTVNQLNMRADLETYVFQDNLATAMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKDVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPSFQSMKQQNRSEILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQNQTLSLQIDAAKVEAQNQLNAARIAEIFNNMDLSKQSEFREFLKTVASFQQDRSEDARANAELLLKGDEQTHKQRMDIANILQSQRQNQPSGSVAETPQ
98725..99636                       PHAGE_Salmon_UPF_BP1_NC_047875: putative phosphoesterase; FG605_RS00625; phage(gi100037)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMEPTTEIQATEDLTLSGDHAAASADSLVVDNANDNAGQEEGFEIVLKDDETAPKQDPAKNAEFARRRIERKRQRELEQQMEAVKRGELPESLRVNPDLPPQPDINAYLSEEGLAKYDYDNSRALAAFNAANTEWLMKAQDARSNAVAEQGRKTQEFTQQSAQYVEAARKHYDAAEKLNIPDYQEKEDAFMQLVPPAVGADIMRLFPEKSAALMYHLGANPEKARQLLAMDGQSALIELTRLSERLTLKPRGKQISSAPPADQPITGDVSAANKDAIRKQMDAAASKGDVETYRKLKAKLKGIR
99636..100928                      PHAGE_Salmon_SPN9CC_NC_017985: coat protein; FG605_RS00630; phage(gi389060540)       0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMALNEGQIVTLAVDEIIETISAITPMAQKAKKYTPPAASMQRSSNTIWMPVEQESPTQEGWDLTDKATGLLELNVAVNMGEPDNDFFQLRADDLRDETAYRHRIQSAARKLANNVELKVANMAAEMGSLVITSPDAIGTNTADAWNFVADAEEIMFSRELNRDMGTSYFFNPQDYKKAGYDLTKRDIFGRIPEEAYRDGTIQRQVAGFDDVLRSPKLPVLTKSTATGITVSGAQSFKPVAWQLDNDGNKVNVDNRFATVTLSATTGLKRGDKISFAGVKFLGQMAKNVLAQDATFSVVRVVDSTHVEITPKPVALDDVSLSPEQRAYANVNTSLADAMAVNILNVKDARTNVFWADDAIRIVSQPIPANHELFAGMKTTSFSIPDVGLNGIFATQGDISTLSGLCRIALWYGVNATRPEAIGVGLPGQTA
100967..101176                     PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; FG605_RS00635; phage(gi389060541)     1.44e-43            SalmonellaentericasubspentericaserovarTyphimuriumMKIAIYKPGGSVMVWGVMAQMKVIDSSELPEYVKDGWFNHPSKLLSSESGDAKPRKGRKPKAVSDADKD
101160..101660                     PHAGE_Salmon_SPN9CC_NC_017985: DNA stabilization protein; FG605_RS00640; phage(gi389060542)     5.85e-122           SalmonellaentericasubspentericaserovarTyphimuriumMQIKTKGDLVRAALRKLGVASDATLTDVEPQSMQDAVDDLEAMMAEWYQDGKGIITGYVFSDDDNPPAEGDDHGLRSSAVSAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPGEQNADSTTPHDEGNG
101620..103038                     PHAGE_Salmon_SPN9CC_NC_017985: packaged DNA stabilization protein; FG605_RS00645; phage(gi389060543)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMPIQQLPMMKGMGKDFKNADYIDYLPINMLATPKEVLNSSGYLRSFPGIAKRNDVNGVSRGVEYNTAQNAVYRVLGSKLYKGETVVGDVAGSGRVSMAHGRTSQAVCVNGQLVEYRYDGTVKTVSNWPADSGFTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAQYRAESQPDGIIGIGSWRDFIVCFGSSTIEYFSLTGATTAGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISHPATGAPSVYIIGSGQASPIATASIEKIIRSYTAEELATGVMETLRFDSHELLIIHLPRHVLVYDASSSQNGPQWCVLKTGLYDDVYRAIDFMYEGNQITCGDKSEAVTGQLQFDISSQYDKQQEHLLFTPLFKADNARCFDLEVESSTGVAQYADRLFLSATTDGINYGREQMIEQNEPFVYDKRVLWKRVGRIRRLIGFKLRVITKSPVTLSGCQIRLE
103042..103743                     PHAGE_Salmon_SPN9CC_NC_017985: packaged DNA stabilization protein; FG605_RS00650; phage(gi389060544)     7.93e-166           SalmonellaentericasubspentericaserovarTyphimuriumMADPSLNNPVIIQAARLDASILPRNVFSQSYLLYVIAQGADVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEAKIQQLRIDVDDHEIRITANTNAIATLDVRLTTAEGEIVTLQADVSALDGRVATVEGNISALLADYVSKTATATQSLASPLNVTTSYSVGGTKVIGARQTGWTAATGAALLGAFNANQAYTVSATYTQSEVSAMATGLQQARQRIKALEDAIRTHGLIN
103743..104198                     PHAGE_Salmon_SPN9CC_NC_017985: head assembly protein; FG605_RS00655; phage(gi389060545)     7.73e-111           SalmonellaentericasubspentericaserovarTyphimuriumMITFTPTRNIDLIETVGNHPDIIAGSNNGDGYDYKPECRYFEVSVHGQFGGIVYYNEIQPLTFDCHAMYLPEIRGFSKEIGLTFWRYILTNTTVQCVTSFAARKFRHGQMYCSMIGLKRVGTIKKYFKGVDDVTFYSATREELIDFLNHGR
104201..104890                     PHAGE_Salmon_SPN9CC_NC_017985: DNA transfer protein 1; FG605_RS00660; phage(gi389060546)     4.09e-155           SalmonellaentericasubspentericaserovarTyphimuriumMLYAFKLGRKLRGEEPLYPEKGGKGGSSSSGAKEAARATQYAADLQNQQFNRVMEQLAPYAAAGLPALQQIQQLSTLEGQNSALNQYYNSDQYKQLADQARYQSLNAAEATGGLGSTATSNQIASIAPTLGQNWLSGQMQNYGNLLNVGQSAAAGQASAGQNYANNAGNLAQQMAAIRSQGSGQSTLGSAISGGTSGALAGAGLAGMLGASTPWGAGIGAGIGLLGSLF
104900..106270                     PHAGE_Salmon_SPN9CC_NC_017985: DNA transfer protein 2; FG605_RS00665; phage(gi389060547)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMATFQLAGLPSMQVANQNAPGQPSLSSYDFSQRPNVGVQLAHGLGAVGQAIQQNEAAQRLSDFQKAFGQAYAAGDRDALRQLAATNPDQIETIRQGMGFVDADRNQAMGDMSARLNIAAAQGPEAVMRVLATHKNTLQQIGVSPEQAWQTYQQSPEGFTQLTDLIGMHAVGPEKYFDIQDKLTGREIDRGRLAETIRSNKAGEGLQARGQNITMRGQDMSASTARRGQDLAMQRANSRTISGVDGNRVVQLADGRTVNIDGKLHGAGANAFYEGIDDNGNMVRVPASAIAAPPTSAASAQNYAMKKDIDAIANADASALDFMTGMTGGAGNPAIGADVRSRLTGKEQRQLYNSAQRIQGRMQNQGVAAARDMGASGINTIAEAKMYFQGMPQVDYSSPEAMQQSIREIQEYTNNYNQQYNVDVGNGGQKSSRQQPATQQSVGGSYTSKSGIQFTVE
106270..108201                     PHAGE_Salmon_SPN9CC_NC_017985: DNA transfer protein 3; FG605_RS00670; phage(gi389060548)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMKVTANGKTFTFPEGTSTEDIGSAIDEYFAGQSAQQEQQGTSTTPESQPQQQSGFISNLGNAAAETGRGLLQAGVNLANIPASMADAVASAGAWAGQKLGIGDGTYQPAPRVTTQGLEQGFGLQQGALTPQTTEGKIFSEALPYLTPVGVERIAAQAPSIAGRVAQGASRLLAENAVGSLAANSERDNPEALATDLGTGVALGGAINKLGRAAGAAYRGIRGTIAPEAQQAIQFANAADVPLHTTDVLQPNSRVGRMAQTTAENIPFAGTSTMRANQQEARSQLVDEFASRFGEYDPSIVVGSLKAKTSGIKRAAGNRLEQVQNAMAGVNIQPSKAIQQIDTEIASLQKLGKVADNDTISKLQAYRDELTRNAGASGPVAMDLQQLSGLRSQFRQDVKGERTVLPNRSDAAIQRIYNAMTSDIDSAIGQNLGNDTLRRYKQANAIYADEANKLQNTRLKNVIMKGDLTPEVVNNMLFSKNKSEVQNLYRSVGQVGRAQMRNGIIGKAMEKSGGSPDQFLRQVNLMSNQTGIAFKGRDAAYLKGIKNYLEATKRAGQAGVTTPTGQQTIPFILGIGTVTNPALVGVGGGYGLLARMYESEPARNAMLRLANTPRGSTAFEKALAEVERAVNSVAQGAKSDALSE
108340..108633                     PHAGE_Entero_ST104_NC_005841: ORF62; FG605_RS00675; phage(gi46358710)                8.54e-65            SalmonellaentericasubspentericaserovarTyphimuriumMKKGVMVGCFCVFLAGCATATKTYAPDGREAYTIECSGVGGSWAMCQAKAGDLCGSKGYDLISTGSDQGAIANIDGSTGNAFATNTISRSMYIACKK
complement(108654..108902)         PHAGE_Salmon_SPN9CC_NC_017985: regulatory protein; FG605_RS00680; phage(gi389060549)     6.02e-53            SalmonellaentericasubspentericaserovarTyphimuriumMGRDDPQFNLRLPYELKEKVKQRAKANGRSLNAELVQIVADSLEKPTPVIGYRDDAEREADIVSREIQELVFEKLKDFYRKK
109038..111041                     PHAGE_Salmon_SPN9CC_NC_017985: tailspike protein; FG605_RS00685; phage(gi389060550)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMTDITANVVVSNPRPIFTESRSFKAVANGKIYIGQIDTDPVNPANQIPVYIENEDGSHVQIAQPLIINAAGKIVYNGQLVKIVTVQGHSMAIYDANGSQVDYIANVLKYDPDQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDVDYHFYNGEKVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQGLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFSYDSAAIKLRIHKLSKTLDSGALYSHINGEPGSGSAWTQLTAISGNTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
complement(111100..112557)         PHAGE_Salmon_SPN9CC_NC_017985: O-antigen conversion translocase; FG605_RS00690; phage(gi389060489)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMKFNSNDRIFISIFLGLAIIYTFPLLTHQSFFVDDLGRSLYGGLGWSGNGRPLSDFIFYIINFGTPIIDASPLPLMLGIVILALALSCVREKLFGDDYITASLCFMMILANPFFIENLSYRYDSLTMCMSVAISIISSYVAYQYKPINIIISSILTIAFLSLYQAALNTYAIFLLAFIISDVVKKNSISNITKNTASSVAGLIIGYFSYSYFIAKRLVTGSYNIEHSKIIEINSSLFEGIISNVLSFYRMFSTILNGDNYLIYYSLFFALIISLIVIVLKVIKRDENKKTKFLLVVLILLASMFFIIGPMIFLKSPIYAPRVLIGMGGFMFFCCLCVFYAFEDKQLISRIYFSFILLISTIFSYGACNAINAQFQLEESIVNRISQDIDYLGFGRDKKNIKFIGTEPYASINENIVIKHPLMRELIPRIINNNWMWSEVLMQRNVFSRNYRLYDKEVKLENGWKKSGNNVYDIGVVGETIVVRFN
complement(112547..113479)         PHAGE_Salmon_SPN9CC_NC_017985: O-antigen conversion protein; FG605_RS00695; phage(gi389060490)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMKISLVVPVFNEEATIPIFYKTVREFEELKPYEVEIVFINDGSKDATESIINKIAASDPLVIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKHSDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMKGVLSWVGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMSFLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKQRPKYILKRKGFKSEI
complement(113476..113838)         PHAGE_Salmon_SPN9CC_NC_017985: bactoprenol-linked glucose translocase; FG605_RS00700; phage(gi389060491)     9.15e-83            SalmonellaentericasubspentericaserovarTyphimuriumMLKLFAKYTSIGVLNTLIHWGVFAFCVYGMHTHQALANFSGFVIAVSFSFYANARFTFNASTTTLRYMMYVGFMGTLSAVVGWMADKCSLPPLLTLVTFSAISLICGFIYSKFIVFRDAK
114127..114172                     attR                                                                                 N/A                 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA
complement(114435..115214)         PROPHAGE_Escher_MG1655: IS3 transposase B; FG605_RS00705; phage(gi16128284)          8.78e-160           SalmonellaentericasubspentericaserovarTyphimuriumYVWHQRRHQINRRQRFHLVCDNVFREAFSDAKQRYGAPRLTDELRAQGYQFNVKTVAASLRRQGLRAKASRRFRPVSYRKHGLPVSENLLKQDFYASGPNQKWVGDITYLRTGEGWLYLAVVIDLWSRSVIGWSMSSRMTAQLACDALQMALWRRKCPENVIVHTDRGGQYCSTDYQSLLKRHNLRGSMSARGCCYDNACAESFFHTLKVECIHGEDFVSREIMRTAVFNYSECDYNRRRHSACGGLSPEQFENQNLA

#### region 2 ####
344437..344448                     attL                                                                                 N/A                 TCGATGTTAAAA
complement(358961..359086)         PHAGE_Salmon_BTP1_NC_042346: hypothetical protein; FG605_RS01875; phage(gi100018)     9.44e-15            SalmonellaentericasubspentericaserovarTyphimuriumVIHRYAHLAPNHLTEHARKIDDIFGDDVPNMSHMENKEEIKK
complement(359055..359722)         PROPHAGE_Xantho_33913: ISxac3 transposase; FG605_RS01880; phage(gi21231087)          1.66e-13            SalmonellaentericasubspentericaserovarTyphimuriumMSGKRYPEEFKIEAVRQVVERGHSVSSAATHLDITTHSLYARIKKYGSNSSTNKEIKSSQMIRPESADSRKSSGLLTSGTYKKKPQIQLVTATMNDKRSPECASDGRVATSPAMNGSRSNRTDWRAEAVVATVMTMRLQKAFSSYSVNGRKRSTERETKPEAIFLITKCFITVDAGMVRASRCHRLNMKTYIINDSEVSRLSVVIHRYAHLAPAA
complement(360109..361761)         PHAGE_Salmon_epsilon34_NC_011976: GtrC; putative membrane protein; FG605_RS01885; phage(gi221328637)     4.82e-102           SalmonellaentericasubspentericaserovarTyphimuriumMRRKMVNNRLKMVIAILIVFSLVYSIGFITPMNSDDYTYALRELSLSSVKMHYLGWSGRVVSDTISTSLLKFFSPHIYNAINSAALTLMVLCWTMIPATLTKSSPSPYVMIFLFFLYFVANPALGQTNFWLVGSANYLWTNMFIAIYILISIYLSNGKKSNLILFVYAISSIFAGCSNENTSLVVVLISVAYFFIMNRNKYLLIGVFGSAIGAGVLLLAPGNLSRASTIQDWYNQPLAWRVLEHFSERLPSAMGAYWQVYIAFIILLISVVLSRNSSSKLMFGSFLFMLGAIAANVAFLASPAMPSRALNGALCFMILSISFVAHSAFTKFNKASIYLSVTTYAMAFLYFIPSYILYYSSIKSISKQTEIREEIIDRAKHNKQDQAIIPDYYFPPVLHAGPSLDTFNSEAMSRYYGIDLKITAPGFFDYSRAFNFKPLNINAKICNNVYIKSLWIYKQQMGIKTFVIFEFNKNPADSLDENTAMFISFKTKDGKIINADVDKKTFQIDGRWLSGRAINGIDSNELESITSGTWDVRTGARTNENITEIIK
complement(361742..362668)         PHAGE_Entero_UAB_Phi20_NC_031019: exonuclease; FG605_RS01890; phage(gi100048)        0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMKISLVVPVFNEEATIPIFYKTVREFEELKPYEVEIVFINDGSKDATESIINKIAASDPLVIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMSREVVENIKQMPERNLFMKGVLSWVGGKTDVVEYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMSFLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKKRPKYIIKNEKKNG
complement(362665..363027)         PHAGE_Entero_UAB_Phi20_NC_031019: recombination protein; FG605_RS01895; phage(gi100049)     1.82e-79            SalmonellaentericasubspentericaserovarTyphimuriumMLKLFAKYTSIGVLNTLIHWGVFAFCVYGMHTHQALANFSGFVIAVSFSFYANARFTFNASTTTLRYMMYVGFMGTLSAVVGWMADKCSLPPLLTLVTFSAISLICGFIYSKFIVFRDAK
363268..363361                     tRNA                                                                                 N/A                 GCGCCGTAGTAATGGGATAACTTGTTGTTAGCTCAGGTAGTTCCAGGAACATCTAAGCCGTGGGTCGCAGGTTCGAATCCTGCACGGCGCGCCA
complement(363525..363656)         hypothetical protein; FG605_RS24975                                                  N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMNNGDAFAHQQMAQTQKPSAPATVENATSFSEMDDYEKAMVIH
complement(363895..364284)         GHKL domain-containing protein; FG605_RS01905                                        N/A                 SalmonellaentericasubspentericaserovarTyphimuriumKGVGSLRFEGRACITGDPIMLRRAISNLLSNTMRYTPPGKTITLRIKEADDQIHIIVENPGTPIAPEHLPLLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVTAHRGKISVTSDTRATRFILTFPKHLR
364279..364512                     efflux RND transporter permease subunit; FG605_RS01910                               N/A                 SalmonellaentericasubspentericaserovarTyphimuriumTFSAEKLDEALYHGAVLRVRPKAMTVAVIIAGLLPVLWGTGAGSEVMSRITAPLLSLFIIPAAYKLMWLRRHRRLAA
complement(364563..365417)         PHAGE_Bordet_vB_BbrM_PHB04_NC_047861: exonuclease; FG605_RS01915; phage(gi100048)     4.61e-07            SalmonellaentericasubspentericaserovarTyphimuriumMDALSRLLTLNAPQGSIDKNCPLGGDWQLPHAAGELSVIRWHTVTQGEAQLEMPTGDAMTLTPGKVVILPQNSAHRLRQSGESPTHIVCGSLRLHTTSRYFLTALPEVLCLAPPPHSPASIWINATILLLQQESERHLPGADVLYSQQCATLFTLAVRDWLSQAGTAKSVLNLLLHPRLGRVILHMLETPAHPWTVETLAQRVHMSRASFAQLFRDVSATTPLAVLTTLRLQIAAQTLSREVLPVMVIAESVGYASESSFHKAFVREFGCTPGEYRKRVSALGR
367112..367123                     attR                                                                                 N/A                 TCGATGTTAAAA
