gi|00000000|ref|NZ_VIMW01000003.1|  Clostridioides difficile strain Gcol.A38 .cdiff_col_A38.3, whole 409876, gc%: 28.38%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
125..137                           attL                                                                                 N/A                 TTATTTATATTTT
177..188                           attL                                                                                 N/A                 TTTATTTAACTT
complement(246..689)               PHAGE_Clostr_phiCD27_NC_011398: putative endodeoxyribonuclease; FLH41_RS05060; phage(gi209901305)     2.68e-48            ClostridioidesdifficileMKINFVIDGEPKAKARPRMSTANGKAYTPDQTVLYENWIRLMYNSTVKHFFEGNVKMTVICYFDITKKDREALKKNKVNTKAYKDAIGKVEGLIRPNKKPDLDNIIKSVADSLNGIAYKDDSQIVEVVSKKYYSDRPRVEVELEDII
complement(814..1155)              PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; FLH41_RS05070; phage(gi209901303)     1.66e-71            ClostridioidesdifficileMANIYCENYNCENYFEDMCMLERIEINNLKVCESYIEGKNELYKLENGYTIHPKDLKMVKSKDYSVEVTHIPTGITVKCRSTNSILKNKNKCLEVLEEELIKINSHLELEDLR
complement(1250..1603)             PHAGE_Clostr_phiCDHM19_NC_028996: putative regulatory protein; FLH41_RS05075; phage(gi971763943)     5.93e-78            ClostridioidesdifficileMTELGELLREIREEEGEYISDMAKRLNISCEDIYAINRGKRELSKNEINNVVKKYELEGEHLYLLKNITHKDKLFDIACNECGSKNVAIGMFDVANDIIEFRCRNCNMIDVVSVDFY
complement(1600..1767)             PHAGE_Clostr_phiCDHM19_NC_028996: hypothetical protein; FLH41_RS05080; phage(gi971763942)     2.93e-28            ClostridioidesdifficileMTNKEMCKLKNLDEREVYKEFGKEICGSCKNNKGDCESKNCSEACKNWLEKVCKS
complement(1776..2780)             PHAGE_Clostr_CDKM15_NC_048643: terminase large subunit; FLH41_RS05085; phage(gi100070)     0.0                 ClostridioidesdifficileMIIHKFIIHVLDKNSDTPILNDFEGRVSQDIEAFFQKKISKVSRDNDIRIAVFNDYSNNLIKSCCEQIIYDESSFLNNSKEIASYLFEIMKLNATLESCDLAICLYSQKDEKKVAILKLDYNKSYTHSIEFKDDKFNIQMSKNEINIQETKTVKIAALVGLSGMNDEYHLRVLDKNAEKEEANSKFVTEFLNATKVKDDKYKTKMFKSTAENWITNALGNDIKQAEDVRSILNYTLKEKHEIDINNFVDKTIKDDKLKDSFKEHMEEKGLDKGFSIDKKWVEKKLKKRNIKTDNGFDIKGNLTDFEDPMKYTVRQNQNGSIDIIIKNVKFYEEK
complement(2777..2998)             PHAGE_Clostr_phiCD505_NC_028764: hypothetical protein; FLH41_RS05090; phage(gi971819897)     4.34e-42            ClostridioidesdifficileMSKYVLRWQKGLLLDERKINYSCGSIENLKKKAELLAKDDKILLVTIDKVEEVIKDTRSQKMAEYYCDGGIEI
complement(3014..3709)             PHAGE_Burkho_phi1026b_NC_005284: gp47; FLH41_RS05095; phage(gi38707937)              2.65e-19            ClostridioidesdifficileMDLNKIMNDALVEIEESGFVEETVKKELEETIKRAVNEIFGSYSKFRKNIEQHLGENININLDELDIQKYNLLVANVVKEKVDATMKGQGIEHLKRNLDNMLVGLKKEYKMSELLEELKEDKYNLDEYPCDEDCITFILESNFNSEWARWIDFDECPNVSRNNCEHSILLRNDGTIAAFRYQNREISSKDIMNGFGNFGDLLFKIYAHNSKIILDLGNDVDDYDLTNGEDY
complement(3793..4866)             PHAGE_Clostr_CDKM15_NC_048643: head morphogenesis protein; FLH41_RS05100; phage(gi100068)     0.0                 ClostridioidesdifficileMLTFLDLFAGIGGFRLGMEKAGHKCLGHCEYDKFANLSYNAMHKPKEDEWFERDIREIRTENIPRADVWCFGFPCQDISVAGKQFGFRGERSSLFFTVTKLIRELKEEDRPKYLLIENVKNLLSVNGGFDFLKVLVELDEIGYDAEWQVLNSKNFGVPQNRERIFIVGHFRGRSTRKVFPIERKSRKNLEQLNNPTHSTNRIYDAVGIARCIRSQAGGGGAKTGLYFIDLNKNSKVTINARCLKAKYNAGVTNRNCDNSGVLVNAVLTPDRVNKRQNGRRIKESGETMFTLTAQDKHGILKNGDIRRLTPKECFRLQGFPDKYYERAASVCSDSQLYKQAGNAVTANVVYEIAKRMG
complement(4974..5309)             PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; FLH41_RS05105; phage(gi209901298)     7.39e-72            ClostridioidesdifficileMNILASVILVIGSFIAGRVYEYRLNLNENDEADSKVLLDVFNEISVLREENKSLKEKLQEKELLFINRLIDFLHDKKICECCIYDCKIDDIEYDCEDGIKKWLDSEELIFE
complement(5427..5792)             PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; FLH41_RS05110; phage(gi209901296)     2.20e-84            ClostridioidesdifficileMLKVERYFSGSVADNIFEDDLTLRNYLALYCCIYGVNKNGELVFPTRGKMLIEFNVDRDRKKRKKASKVKLINVKTGEEKIFDSIDSAACFLRLQSQAVYQTIKKKTKTRSGWKAEYIEEE
complement(5806..6063)             PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; FLH41_RS05115; phage(gi209901295)     1.27e-53            ClostridioidesdifficileMIIIRSQNKLDLMRVNRVEIDSRYVYAVFEGESNVREIGRYKSEERAIEVLNRIQEAIIAGTKFDIINKDGVRCNKEKVFEMPVE
complement(6397..6804)             PHAGE_Clostr_phiCD27_NC_011398: putative single stranded DNA binding protein; FLH41_RS05120; phage(gi209901294)     2.92e-96            ClostridioidesdifficileMNTITLVGRLVADAELKYLPNSGTPKITFSMAVDRRFKDKNGNKITDFIQCEQLGKHVENLVQYLVKGKPIYAVGELNIYNYKDENGCWKSITKVNVNALELLSSKNDNNAKQEYVPPGLDPQGFQAIDDDDIPF
complement(6820..6993)             PHAGE_Clostr_phiCD27_NC_011398: putative resolvase/integrase; FLH41_RS05125; phage(gi209901293)     7.13e-34            ClostridioidesdifficileMARIYAQRSGSLNEQDRLELLRLLGKAGYTVKVAREKQNSKTTYTYFVEYTEEQEEK
complement(7054..8004)             PHAGE_Clostr_phiCD27_NC_011398: putative phage replication protein; FLH41_RS05130; phage(gi209901292)     0.0                 ClostridioidesdifficileMNFNNETYFHINFDDPFTRVPNTILDNENLSYSAIGVVTQMLRFQRSGSHKVYAKSLISYRKDSKTKVSNALKELMQEGFVIRTQIRDEKGQMKGYRYDIFDTPQNVNSESVETTESQPCAVFPTPVKPEAGKTEVGETGSRQNRGREIGNIKENSIKKKIGLKENDVITTVIAEQSEKNKTVYIKKYYESYIGVITPNNFLQLLTYLDDGMEADVIIRAVDEAVGSGVKNYKYVKTILNNWIEAGVKTVLELTEYQNEFERKKKSKQEKKQSNSKTVNTHNVNKNKFANFNQTFTQYEEKELDEIIKKSQKEKFK
complement(8013..8621)             PHAGE_Clostr_phiCD27_NC_011398: putative essential recombination function protein; FLH41_RS05135; phage(gi209901291)     1.27e-144           ClostridioidesdifficileMETNNVYIKLVNIQSTLKAPKSQFNSFGKYNYRSCEDILEGLKPILKEEKALVILDDKVVQIGTRFYVEATATLIDAETGEKVSAKALAREDETKKGMDLAQVTGSVSSYARKYALNGLFCIDDTKDSDATNTHGKEQKKREVSEDELSTLYFLGESIDKDKNRVDSEVYKKFSKLAIDLTKQEYEKVLNGYKSILDKQNQE
complement(8631..9140)             PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; FLH41_RS05140; phage(gi209901290)     2.06e-113           ClostridioidesdifficileMSTLYELTTDLLEIEEGLTEITGNEAEKLEEIKEIIKQEIQNKNTRIVSVIIDIDSDINSLDLEIKRMQELKKIKKNSLDRLKSNIKECMELLGIKKVETFLGNISIRKSAGSLVIEDEEKIPAIYKTVEQVVKVDKNTIKDFIKKGHEVEGCRIEYGTTLTIPKAKKE
complement(9226..9543)             PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; FLH41_RS05145; phage(gi209901289)     2.44e-68            ClostridioidesdifficileMESLKIVKQYVEGQLNLSSLEIDKNKETYEILKNKSSRDMLDDINLNDALREVTVNERLKIFAESLLELLDTQIKIKESEESEDYKRLCMYLDEFGRDRPIDVQI
complement(9643..9862)             hypothetical protein; FLH41_RS05150                                                  N/A                 ClostridioidesdifficileLKVNFNLEKLKNRKCSECKFEVWVQYLYCSSSNGGTKFSLLQRGMYVSSIDTRGYIWLYSKIRLG
complement(9846..10034)            PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; FLH41_RS05155; phage(gi209901287)     1.61e-37            ClostridioidesdifficileMGKKSEYTVTTVGEPNLDALGETLAKILTEKFGVLITHTYIENYYVDKERGGDVDGAIESEL
complement(10095..10883)           PHAGE_Clostr_phiCD27_NC_011398: putative antirepressor; FLH41_RS05160; phage(gi209901286)     0.0                 ClostridioidesdifficileMNDLTIIKQNNQFLVESREVAELIEKKHDNLLRDIRGYKKILEDSSNLRSQDFFIESTYINTQNKIQPCYLLTKKGCDMVANKMTGEKGIIFTAIYVTKFEEMERELKEQQPKLPTTYKEALQQLLIEVEEKEQLQLENQEKDKVIQLQQPKVLFADSVASSDNSILVGELAKLLRQNGIDTGQNRLFDWLRNNGYLIKRKGEDYNTPTQKSVDLGVIETKEGTRVHPDGHTSITKTPKITGKGQIYFINKFKKNNQISMLS
complement(10900..11070)           PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; FLH41_RS20550; phage(gi209901285)     1.52e-32            ClostridioidesdifficileMPTKSKRISITIFPELETDLDVLKKEKFYKESQSEMLRYLIKLGLQVNKEKVYKNE
11226..11399                       PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; FLH41_RS20555; phage(gi209901284)     1.91e-33            ClostridioidesdifficileMATQKPRFTITVDDELLKEIDDFRFDKRFSTRTQATIELIKLGLEKLNAEKCKETKE
11510..11521                       attR                                                                                 N/A                 TTTATTTAACTT
complement(11540..11743)           PHAGE_Clostr_phiCD27_NC_011398: putative phage antirepressor; FLH41_RS05165; phage(gi209901283)     4.38e-43            ClostridioidesdifficileMSNNLQVIERNNKRVLTTQQLADVYETDSKNISNNFNNNKDRFIEGKHYFLLQGDDLKNFKGIHTEYQ
complement(11791..12012)           PHAGE_Clostr_phiCD27_NC_011398: putative phage repressor; FLH41_RS05170; phage(gi209901282)     7.08e-46            ClostridioidesdifficileMNISKLKGKMVEKKYTQKKLAEELGMTVQALNAKLNNRSQFKIEEAVKISNILQIEEPGEIFFDNYIPKMQRN
12166..12621                       PHAGE_Clostr_phiCD27_NC_011398: putative phage repressor; FLH41_RS05175; phage(gi209901281)     7.93e-107           ClostridioidesdifficileMNTENDLKMLEITNRIKNKRLELNMSYQDLANKTGLSKSTLQRYETGAIKNIPLDKLEILAHALDESPAFIMGWNEDCKQIKIKENKLLSSFNALNDIGQNEAIKRVDELTQIGKYVNKNHIDTIAAHNEHLHEEGEIEKIYQDLDDMDNW
12639..13112                       PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; FLH41_RS05180; phage(gi209901280)     8.52e-111           ClostridioidesdifficileMNSYEKLLSEADDNNIIVREVPLISNSHGLYKNNRIALNKNTLNNISEKACVLAEELGHHYTSYGNILDLNKVENSKQEYKARLMAYNKLIGLKGIIDSFNAGCKTITEMAEYLDVTEKFLNEALECYKSKYGFSATLDNYVIFFEPRFSIMNANFL
13177..14535                       PHAGE_Clostr_phiCD27_NC_011398: putative phage site-specific recombinase; FLH41_RS05185; phage(gi209901279)     0.0                 ClostridioidesdifficileMLRVALYIRVSTEEQALNGDSIRTQIEALEQYSKENDFNIVGKYIDEGCSATNLKRPNLQRLLRDVEKDKVDLVLMTKIDRLSRGVKNYYKIMETLEKHKCDWKTILENYDSSTAAGRLHINIMLSVAENEAAQTSERIKFVFQDKLRRKEVISGTIPIGYKIENKHLVIDKEKKYIVKAIFDEYEKSGSVRTLIETINNLHGELYSYNKIKNILRNELYIGIYNKRGFYVEDYCEPIISKKQFKQIQRILEKNKKTTPNKNIHYHIFSGLLKCKECGYTLKGNSSNVGEKLYLSYRCSTFYLNKNCVHNVTHNEKHIENYLLTNLKPQLHKHMVKLEAQNEKIRRNKKSNKKDEKKKIMKKLDKIKDLYLEDLIDKETYRKDYEKLQSQLDNITEEQESQIIDTSHIKKFLDIDINEMYSDLSRVERRRFWLSIIDYIEIDNNKNITINFI
27213..27225                       attR                                                                                 N/A                 TTATTTATATTTT
