Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region,
   the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.

Method 2:
1. If the number of certain phage organism in this table  is more than 50% of the total number of CDS of the region, that phage 
   organism is considered as the major potential phage for that region; the percentage of the total number
   of that phage organism in this table in the  total number of proteins of the region is calculated and 
   then multipled by 100; the percentage of the length of that phage organism in this table in the length 
   of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).

Method 3:
1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber',
   'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased 
   by 10 for each keyword found.
2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
3. If there are at least 40 proteins in the region, the score will be increased by 10.
4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of
   the total number of proteins in the region, the score will be increased by 10.

Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
   


Totally 9 intact prophage regions have been identified.




                                  REGION         REGION_LENGTH            COMPLETENESS(score)           SPECIFIC_KEYWORD                             REGION_POSITION          TRNA_NUM                 TOTAL_PROTEIN_NUM       PHAGE_HIT_PROTEIN_NUM            HYPOTHETICAL_PROTEIN_NUM         PHAGE+HYPO_PROTEIN_PERCENTAGE    BACTERIAL_PROTEIN_NUM            ATT_SITE_SHOWUP                  PHAGE_SPECIES_NUM                MOST_COMMON_PHAGE_NAME(hit_genes_count)    FIRST_MOST_COMMON_PHAGE_NUM      FIRST_MOST_COMMON_PHAGE_PERCENTAGE   GC_PERCENTAGE                 
                                 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
                                  1              5.5Kb                    incomplete(30)                transposase                                  164396-169920            0                        9                       6                                3                                100%                             0                                no                               5                                PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640(2),PHAGE_Bacill_G_NC_023719(2),PHAGE_Burkho_BcepC6B_NC_005887(1),PHAGE_Stx2_c_Stx2a_F451_NC_049924(1),PHAGE_Vibrio_vB_VspP_pVa5_NC_049379(1),PHAGE_Vibrio_1.097.O._10N.286.49.B3_NC_049431(1),PHAGE_Stx2_c_Stx2a_WGPS9_NC_049923(1),PHAGE_Escher_ArgO145_NC_049918(1),PHAGE_Escher_Lys12581Vzw_NC_049917(1),PHAGE_Lactoc_bIL312_NC_002671(1),PHAGE_Escher_SH2026Stx1_NC_049919(1),PHAGE_Pseudo_pYD6_A_NC_020849(1),PHAGE_Cellul_phi14:2_NC_021806(1),PHAGE_Vibrio_1.026.O._10N.222.49.C7_NC_049430(1)   2                                22.22%                           47.20%                        
                                  2              5.9Kb                    questionable(80)              transposase                                  836492-842442            0                        7                       7                                0                                100%                             0                                no                               1                                PHAGE_Stx2_c_1717_NC_011357(3),PHAGE_Escher_SH2026Stx1_NC_049919(3),PHAGE_Stx2_c_Stx2a_F451_NC_049924(3),PHAGE_Entero_BP_4795_NC_004813(1)   7                                42.85%                           55.03%                        
                                  3              11.6Kb                   incomplete(50)                transposase,integrase                        880458-892067            0                        17                      9                                8                                100%                             0                                yes                              5                                PHAGE_Stx2_c_Stx2a_WGPS9_NC_049923(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Entero_VT2phi_272_NC_028656(2),PHAGE_Stx2_II_NC_004914(2),PHAGE_Erwini_vB_EamM_Kwan_NC_031010(1),PHAGE_Escher_RCS47_NC_042128(1),PHAGE_Erwini_Wellington_NC_048016(1),PHAGE_Salmon_SPN3US_NC_027402(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Erwini_phiEaH2_NC_019929(1),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Escher_PA28_NC_041935(1),PHAGE_Clostr_phiCD211_NC_029048(1)   2                                11.76%                           46.17%                        
                                  4              54.6Kb                   intact(150)                   integrase,tail,lysin,terminase,portal,protease,plate     1249896-1304510          1                        66                      61                               5                                100%                             0                                yes                              16                               PHAGE_Entero_mEp460_NC_019716(34),PHAGE_Entero_cdtI_NC_009514(32),PHAGE_Entero_SfV_NC_003444(13),PHAGE_Escher_500465_1_NC_049342(12),PHAGE_Shigel_SfIV_NC_022749(11),PHAGE_Salmon_Fels_1_NC_010391(11),PHAGE_Shigel_SfII_NC_021857(11),PHAGE_Phage_Gifsy_2_NC_010393(10),PHAGE_Entero_c_1_NC_019706(9),PHAGE_Phage_Gifsy_1_NC_010392(8),PHAGE_Entero_lambda_NC_001416(6),PHAGE_Entero_mEp213_NC_019720(6),PHAGE_Entero_DE3_NC_042057(5),PHAGE_Entero_HK630_NC_019723(4),PHAGE_Salmon_ST64B_NC_004313(4),PHAGE_Salmon_118970_sal3_NC_031940(3),PHAGE_Entero_phiP27_NC_003356(3),PHAGE_Entero_HK629_NC_019711(3),PHAGE_Entero_BP_4795_NC_004813(2),PHAGE_Burkho_KL3_NC_015266(2),PHAGE_Entero_VT2phi_272_NC_028656(2),PHAGE_Cronob_phiES15_NC_018454(2),PHAGE_Escher_ArgO145_NC_049918(2),PHAGE_Entero_SfI_NC_027339(2),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Endosy_APSE_1_NC_000935(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Entero_RB43_NC_007023(1),PHAGE_Entero_IME10_NC_019501(1),PHAGE_Staphy_StauST398_5_NC_023500(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Escher_vB_EcoM_12474III_NC_049457(1),PHAGE_Serrat_2050HW_NC_048668(1),PHAGE_Klebsi_ST15_OXA48phi14.1_NC_049454(1),PHAGE_Entero_RB16_NC_014467(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Serrat_Moabite_NC_048792(1),PHAGE_Klebsi_ST437_OXA245phi4.1_NC_049448(1),PHAGE_Entero_mEp235_NC_019708(1),PHAGE_Bordet_BPP_1_NC_005357(1),PHAGE_Citrob_Miller_NC_025414(1),PHAGE_Klebsi_vB_KpnM_KpV477_NC_031087(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Salmon_g341c_NC_013059(1),PHAGE_Erwini_vB_EhrS_59_NC_048198(1),PHAGE_Escher_Lys12581Vzw_NC_049917(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Salico_CGphi29_NC_020844(1),PHAGE_Salmon_RE_2010_NC_019488(1),PHAGE_Pectob_ZF40_NC_019522(1),PHAGE_Pseudo_OBP_NC_016571(1),PHAGE_Pseudo_phiCTX_NC_003278(1),PHAGE_Salmon_vB_SemP_Emek_NC_018275(1),PHAGE_Bacter_APSE_2_NC_011551(1),PHAGE_Entero_UAB_Phi20_NC_031019(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Salmon_epsilon34_NC_011976(1),PHAGE_Citrob_vB_CfrM_CfP1_NC_031057(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Entero_phi80_NC_021190(1)   34                               51.51%                           50.26%                        
                                  5              12.8Kb                   incomplete(20)                capsid                                       1818633-1831469          0                        13                      9                                4                                100%                             0                                yes                              3                                PHAGE_Escher_RCS47_NC_042128(3),PHAGE_Salmon_SJ46_NC_031129(2),PHAGE_Staphy_SPbeta_like_NC_029119(1),PHAGE_Bacill_SPbeta_NC_001884(1)   5                                23.07%                           51.84%                        
                                  6              41.5Kb                   intact(130)                   transposase,integrase,tail,terminase,portal,coat,head,injection     1943533-1985110          0                        53                      46                               7                                100%                             0                                yes                              18                               PHAGE_Entero_Sf101_NC_027398(23),PHAGE_Salmon_HK620_NC_002730(13),PHAGE_Salmon_epsilon34_NC_011976(8),PHAGE_Shigel_Sf6_NC_005344(8),PHAGE_Entero_HK629_NC_019711(6),PHAGE_Salmon_SEN22_NC_028696(6),PHAGE_Entero_HK446_NC_019714(6),PHAGE_Entero_IME10_NC_019501(6),PHAGE_Entero_c_1_NC_019706(6),PHAGE_Entero_HK544_NC_019767(6),PHAGE_Salmon_UPF_BP1_NC_047875(5),PHAGE_Entero_mEp234_NC_019715(5),PHAGE_Entero_UAB_Phi20_NC_031019(5),PHAGE_Salmon_103203_sal5_NC_031946(4),PHAGE_Salmon_118970_sal4_NC_030919(4),PHAGE_Salmon_vB_SemP_Emek_NC_018275(4),PHAGE_Salmon_g341c_NC_013059(3),PHAGE_Entero_VT2_Sakai_NC_000902(3),PHAGE_Escher_Skarpretter_NC_048112(3),PHAGE_Stx2_c_1717_NC_011357(3),PHAGE_Salmon_ST160_NC_014900(3),PHAGE_Entero_HK542_NC_019769(3),PHAGE_Entero_HK106_NC_019768(3),PHAGE_Entero_HK97_NC_002167(2),PHAGE_Escher_P13374_NC_018846(2),PHAGE_Escher_Lys12581Vzw_NC_049917(2),PHAGE_Sodali_phiSG1_NC_007902(2),PHAGE_Stx2_II_NC_004914(2),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(2),PHAGE_Entero_HK633_NC_019719(2),PHAGE_Salmon_SE1_NC_011802(2),PHAGE_Escher_phage_NC_004913(2),PHAGE_Entero_IME_EC2_NC_047742(2),PHAGE_Entero_SfI_NC_027339(2),PHAGE_Entero_ST104_NC_005841(2),PHAGE_Salmon_Lumpael_NC_048113(2),PHAGE_Escher_ECP1_NC_049926(2),PHAGE_Acinet_AbP2_NC_041998(2),PHAGE_Klebsi_vB_KpnS_IME279_NC_047862(2),PHAGE_Entero_P22_NC_002371(2),PHAGE_Entero_HK140_NC_019710(2),PHAGE_Escher_C130_2_NC_048067(2),PHAGE_Acinet_LZ35_NC_031117(2),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Salmon_BTP1_NC_042346(1),PHAGE_Vibrio_12A4_NC_021068(1),PHAGE_Salmon_64795_sal3_NC_031918(1),PHAGE_Escher_SH2026Stx1_NC_049919(1),PHAGE_Stx2_c_86_NC_008464(1),PHAGE_Riemer_RAP44_NC_019490(1),PHAGE_Hypert_2_NC_014321(1),PHAGE_Pseudo_phiPSA1_NC_024365(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Shewan_3/49_NC_025466(1),PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Ralsto_RSK1_NC_022915(1),PHAGE_Stx2_c_Stx2a_F451_NC_049924(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Endosy_APSE_1_NC_000935(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Entero_HK630_NC_019723(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Entero_mEp235_NC_019708(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Bacter_crAss001_NC_049977(1),PHAGE_Escher_Av_05_NC_025830(1)   23                               43.39%                           46.69%                        
                                  7              6.2Kb                    incomplete(60)                transposase                                  2014296-2020583          0                        8                       6                                2                                100%                             0                                no                               4                                PHAGE_Escher_500465_1_NC_049342(3),PHAGE_Escher_503458_NC_049341(2),PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Escher_520873_NC_049344(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Escher_SH2026Stx1_NC_049919(1),PHAGE_Bacill_PfEFR_5_NC_031055(1),PHAGE_Salmon_vB_SemP_Emek_NC_018275(1),PHAGE_Bacill_PfEFR_4_NC_048641(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Bacill_vB_BceS_MY192_NC_048633(1),PHAGE_Salmon_g341c_NC_013059(1),PHAGE_Entero_P4_NC_001609(1),PHAGE_Entero_fiAA91_ss_NC_022750(1),PHAGE_Stenot_S1_NC_011589(1)   3                                37.5%                            52.69%                        
                                  8              49.4Kb                   intact(150)                   integrase,tail,head,terminase,capsid,plate     2135266-2184736          3                        68                      48                               20                               100%                             0                                yes                              29                               PHAGE_Pectob_ZF40_NC_019522(13),PHAGE_Phage_Gifsy_1_NC_010392(6),PHAGE_Pseudo_PPpW_3_NC_023006(6),PHAGE_Entero_HK225_NC_019717(6),PHAGE_Entero_mEp237_NC_019704(6),PHAGE_Entero_N15_NC_001901(5),PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995(5),PHAGE_Entero_DE3_NC_042057(5),PHAGE_Entero_phi80_NC_021190(5),PHAGE_Entero_mEp390_NC_019721(4),PHAGE_Escher_vB_EcoM_ep3_NC_025430(4),PHAGE_Escher_vB_EcoM_ECOO78_NC_041926(4),PHAGE_Entero_Arya_NC_031048(4),PHAGE_Entero_lambda_NC_001416(3),PHAGE_Entero_HK629_NC_019711(3),PHAGE_Salmon_118970_sal3_NC_031940(3),PHAGE_Escher_HK639_NC_016158(3),PHAGE_Entero_HK630_NC_019723(3),PHAGE_Vibrio_VP58.5_NC_027981(3),PHAGE_Vibrio_VHML_NC_004456(3),PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(3),PHAGE_Burkho_KS5_NC_015265(2),PHAGE_Ralsto_RSA1_NC_009382(2),PHAGE_Phage_Gifsy_2_NC_010393(2),PHAGE_Cronob_phiES15_NC_018454(2),PHAGE_Klebsi_KpCHEMY26_NC_049467(2),PHAGE_Escher_ECP1_NC_049926(2),PHAGE_Salmon_SEN34_NC_028699(2),PHAGE_Entero_VT2_Sakai_NC_000902(2),PHAGE_Pseudo_Dobby_NC_048109(2),PHAGE_Pseudo_PMG1_NC_016765(2),PHAGE_Burkho_AP3_NC_047752(2),PHAGE_Escher_vB_EcoM_Goslar_NC_048170(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Burkho_KS14_NC_015273(1),PHAGE_Mannhe_vB_MhM_587AP1_NC_028898(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Gordon_Kita_NC_031233(1),PHAGE_Serrat_Parlo_NC_048758(1),PHAGE_Sphing_PAU_NC_019521(1),PHAGE_Clostr_phiMMP02_NC_019421(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Shigel_Sf6_NC_005344(1),PHAGE_Escher_ArgO145_NC_049918(1),PHAGE_Escher_520873_NC_049344(1),PHAGE_Entero_186_NC_001317(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Escher_D108_NC_013594(1),PHAGE_Entero_SfMu_NC_027382(1),PHAGE_Entero_HK022_NC_002166(1),PHAGE_Escher_Lys12581Vzw_NC_049917(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Mannhe_vB_MhS_587AP2_NC_028743(1),PHAGE_Klebsi_ST16_OXA48phi5.4_NC_049450(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Escher_phage_NC_004913(1),PHAGE_Pseudo_phiCTX_NC_003278(1),PHAGE_Crocei_P2559Y_NC_023614(1),PHAGE_Entero_EcP1_NC_019485(1),PHAGE_Clostr_c_st_NC_007581(1),PHAGE_Stx2_c_Stx2a_F451_NC_049924(1),PHAGE_Burkho_ST79_NC_021343(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Salmon_SP_076_NC_021782(1),PHAGE_Pseudo_H66_NC_042342(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Klebsi_ST147_VIM1phi7.1_NC_049451(1),PHAGE_Klebsi_Pylas_NC_049444(1),PHAGE_Pseudo_ZC08_NC_048639(1),PHAGE_Ralsto_RSY1_NC_025115(1),PHAGE_Myovir_sp._NC_048846(1),PHAGE_Ralsto_RsoM1USA_NC_049432(1),PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Pseudo_F116_NC_006552(1),PHAGE_Pseudo_ZC03_NC_048638(1),PHAGE_Vibrio_PWH3a_P1_NC_020863(1),PHAGE_Stenot_Smp131_NC_023588(1),PHAGE_Escher_vB_EcoM_12474III_NC_049457(1),PHAGE_Escher_pro483_NC_028943(1),PHAGE_Entero_HK140_NC_019710(1),PHAGE_Proteu_VB_PmiS_Isfahan_NC_041925(1),PHAGE_Escher_Pollock_NC_027381(1),PHAGE_Salmon_SP_058_NC_021772(1),PHAGE_Stx2_c_86_NC_008464(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Thermo_THSA_485A_NC_018264(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Shigel_Stx_NC_029120(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Pectob_PM1_NC_023865(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Mycoba_Che9c_NC_004683(1),PHAGE_Pectob_PP101_NC_047791(1)   13                               19.11%                           48.17%                        
                                  9              63.4Kb                   intact(130)                   integrase,tail,head                          2215775-2279267          0                        75                      64                               11                               100%                             0                                yes                              28                               PHAGE_Entero_phiP27_NC_003356(16),PHAGE_Entero_DE3_NC_042057(16),PHAGE_Entero_lambda_NC_001416(14),PHAGE_Entero_HK630_NC_019723(13),PHAGE_Entero_HK629_NC_019711(13),PHAGE_Entero_BP_4795_NC_004813(12),PHAGE_Entero_YYZ_2008_NC_011356(11),PHAGE_Entero_cdtI_NC_009514(9),PHAGE_Phage_Gifsy_1_NC_010392(9),PHAGE_Entero_mEp460_NC_019716(7),PHAGE_Entero_HK225_NC_019717(6),PHAGE_Salmon_118970_sal3_NC_031940(5),PHAGE_Stx2_c_86_NC_008464(5),PHAGE_Stx2_c_1717_NC_011357(5),PHAGE_Entero_phi80_NC_021190(4),PHAGE_Entero_N15_NC_001901(4),PHAGE_Entero_SfV_NC_003444(4),PHAGE_Entero_mEp237_NC_019704(3),PHAGE_Stx2_c_Stx2a_F451_NC_049924(3),PHAGE_Shigel_Ss_VASD_NC_028685(3),PHAGE_Salmon_ST64B_NC_004313(3),PHAGE_Escher_SH2026Stx1_NC_049919(3),PHAGE_Escher_Lys12581Vzw_NC_049917(3),PHAGE_Escher_vB_EcoM_12474III_NC_049457(2),PHAGE_Endosy_APSE_1_NC_000935(2),PHAGE_Bacter_APSE_2_NC_011551(2),PHAGE_Shigel_Stx_NC_029120(2),PHAGE_Salmon_Fels_1_NC_010391(2),PHAGE_Salmon_103203_sal5_NC_031946(2),PHAGE_Stx2_vB_EcoP_24B_NC_027984(2),PHAGE_Entero_UAB_Phi20_NC_031019(2),PHAGE_Shigel_POCJ13_NC_025434(2),PHAGE_Escher_ArgO145_NC_049918(2),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Escher_ECD7_NC_041936(1),PHAGE_Escher_Av_05_NC_025830(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Entero_HK140_NC_019710(1),PHAGE_Entero_JSE_NC_012740(1),PHAGE_Stx2_c_Stx2a_WGPS9_NC_049923(1),PHAGE_Vibrio_VP58.5_NC_027981(1),PHAGE_Salmon_SEN4_NC_029015(1),PHAGE_Pseudo_Noxifer_NC_041994(1),PHAGE_Erwini_vB_EamM_Yoloswag_NC_047815(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Dickey_vB_DsoM_AD1_NC_048054(1),PHAGE_Entero_Phi1_NC_009821(1),PHAGE_Escher_RCS47_NC_042128(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Strept_SpSL1_NC_027396(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Strept_phiARI0923_NC_030946(1),PHAGE_Burkho_BcepIL02_NC_012743(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Lactob_JCL1032_NC_019456(1),PHAGE_Entero_RB49_NC_005066(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Entero_ES18_NC_006949(1),PHAGE_Salmon_SEN5_NC_028701(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Escher_PA28_NC_041935(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Bordet_BPP_1_NC_005357(1),PHAGE_Pseudo_YMC11/02/R656_NC_028657(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Salmon_IME207_NC_031924(1),PHAGE_Erwini_vB_EamM_Alexandra_NC_047995(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Entero_WPhi_NC_005056(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Salmon_II_E1_NC_010495(1),PHAGE_Salmon_FSLSP030_NC_021779(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Entero_IME10_NC_019501(1),PHAGE_Escher_phage_NC_004913(1),PHAGE_Salmon_RE_2010_NC_019488(1),PHAGE_Staphy_SPbeta_like_NC_029119(1),PHAGE_Salmon_35_NC_048632(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Erwini_vB_EamM_Y3_NC_047880(1),PHAGE_Klebsi_ST16_OXA48phi5.4_NC_049450(1),PHAGE_Salmon_BSPM4_NC_048655(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Salmon_g341c_NC_013059(1),PHAGE_Lactob_jlb1_NC_024206(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Haemop_SuMu_NC_019455(1)   16                               21.33%                           50.41%                        
                                  10             53.8Kb                   intact(150)                   tail,transposase,head,portal,terminase,lysis,integrase     2787723-2841567          2                        66                      52                               14                               100%                             0                                yes                              23                               PHAGE_Entero_BP_4795_NC_004813(23),PHAGE_Entero_YYZ_2008_NC_011356(21),PHAGE_Stx2_c_1717_NC_011357(17),PHAGE_Entero_mEp460_NC_019716(6),PHAGE_Entero_cdtI_NC_009514(6),PHAGE_Entero_DE3_NC_042057(5),PHAGE_Entero_phiP27_NC_003356(5),PHAGE_Salmon_118970_sal3_NC_031940(5),PHAGE_Escher_503458_NC_049341(4),PHAGE_Pectob_ZF40_NC_019522(4),PHAGE_Shigel_Stx_NC_029120(4),PHAGE_Shigel_POCJ13_NC_025434(4),PHAGE_Stx2_c_86_NC_008464(4),PHAGE_Escher_SH2026Stx1_NC_049919(4),PHAGE_Escher_520873_NC_049344(4),PHAGE_Entero_HK446_NC_019714(3),PHAGE_Entero_SfV_NC_003444(3),PHAGE_Entero_HK629_NC_019711(3),PHAGE_Entero_lambda_NC_001416(3),PHAGE_Entero_mEp235_NC_019708(3),PHAGE_Escher_ECP1_NC_049926(3),PHAGE_Entero_mEp390_NC_019721(3),PHAGE_Salmon_ST64B_NC_004313(2),PHAGE_Entero_HK225_NC_019717(2),PHAGE_Entero_P88_NC_026014(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Escher_Lys12581Vzw_NC_049917(2),PHAGE_Entero_SfMu_NC_027382(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Pseudo_PAJU2_NC_011373(2),PHAGE_Burkho_Bcep176_NC_007497(2),PHAGE_Escher_PA28_NC_041935(2),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Entero_HK544_NC_019767(2),PHAGE_Entero_mEp237_NC_019704(2),PHAGE_Stx2_c_Stx2a_WGPS9_NC_049923(2),PHAGE_Entero_HK630_NC_019723(2),PHAGE_Escher_HK75_NC_016160(2),PHAGE_Escher_TL_2011c_NC_019442(2),PHAGE_Stx2_c_Stx2a_F451_NC_049924(2),PHAGE_Entero_fiAA91_ss_NC_022750(2),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Entero_mEp234_NC_019715(1),PHAGE_Escher_phage_NC_004913(1),PHAGE_Rhodob_RcapNL_NC_020489(1),PHAGE_Escher_RCS47_NC_042128(1),PHAGE_Cronob_ENT39118_NC_019934(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Erwini_vB_EhrS_59_NC_048198(1),PHAGE_Bacill_PM1_NC_020883(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Escher_D108_NC_013594(1),PHAGE_Entero_HK022_NC_002166(1),PHAGE_Salico_CGphi29_NC_020844(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Escher_ArgO145_NC_049918(1),PHAGE_Erwini_vB_EhrS_49_NC_048197(1),PHAGE_Xantho_OP1_NC_007709(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Vibrio_VHML_NC_004456(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Entero_HK106_NC_019768(1),PHAGE_Pantoe_vB_PagM_LIET2_NC_048751(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Xantho_phiL7_NC_012742(1),PHAGE_Yersin_L_413C_NC_004745(1),PHAGE_Cronob_ESSI_2_NC_047854(1),PHAGE_Escher_500465_1_NC_049342(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Escher_HK639_NC_016158(1),PHAGE_Entero_Mu_NC_000929(1)   22                               34.84%                           51.93%                        
                                  11             48.6Kb                   intact(130)                   tail,lysin,transposase,integrase             2979223-3027870          0                        59                      53                               6                                100%                             0                                yes                              22                               PHAGE_Entero_DE3_NC_042057(25),PHAGE_Entero_lambda_NC_001416(24),PHAGE_Entero_HK630_NC_019723(23),PHAGE_Entero_HK629_NC_019711(21),PHAGE_Entero_mEp237_NC_019704(9),PHAGE_Escher_SH2026Stx1_NC_049919(8),PHAGE_Entero_HK225_NC_019717(8),PHAGE_Entero_BP_4795_NC_004813(7),PHAGE_Stx2_c_Stx2a_F451_NC_049924(6),PHAGE_Entero_phi80_NC_021190(5),PHAGE_Stx2_c_1717_NC_011357(4),PHAGE_Escher_HK639_NC_016158(4),PHAGE_Entero_933W_NC_000924(4),PHAGE_Escher_PA28_NC_041935(4),PHAGE_Entero_cdtI_NC_009514(4),PHAGE_Cronob_phiES15_NC_018454(4),PHAGE_Entero_N15_NC_001901(3),PHAGE_Entero_SfI_NC_027339(3),PHAGE_Salmon_ST160_NC_014900(2),PHAGE_Stx2_vB_EcoP_24B_NC_027984(2),PHAGE_Erwini_phiEt88_NC_015295(2),PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Phage_Gifsy_1_NC_010392(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Salmon_103203_sal5_NC_031946(2),PHAGE_Salmon_SEN34_NC_028699(2),PHAGE_Salmon_ST64T_NC_004348(2),PHAGE_Stx2_II_NC_004914(2),PHAGE_Entero_HK022_NC_002166(2),PHAGE_Salmon_118970_sal4_NC_030919(2),PHAGE_Entero_JenP1_NC_029028(2),PHAGE_Entero_JenP2_NC_028997(2),PHAGE_Salmon_UPF_BP1_NC_047875(2),PHAGE_Entero_ST104_NC_005841(2),PHAGE_Entero_mEp460_NC_019716(2),PHAGE_Escher_ECP1_NC_049926(1),PHAGE_Vibrio_VspSw_1_NC_048151(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Mycoba_Ariel_NC_028876(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Shigel_JK16_NC_049814(1),PHAGE_Entero_mEp235_NC_019708(1),PHAGE_Escher_SECphi27_NC_047938(1),PHAGE_Escher_tonn_NC_049815(1),PHAGE_Sphing_Lacusarx_NC_041927(1),PHAGE_Mycoba_Gaia_NC_026590(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Stx2_c_Stx2a_WGPS9_NC_049923(1),PHAGE_Escher_tunus_NC_049816(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Entero_HK140_NC_019710(1),PHAGE_Mycoba_MiaZeal_NC_028953(1),PHAGE_Lactob_3_521_NC_048753(1),PHAGE_Pseudo_phi2_NC_030931(1),PHAGE_Entero_HK106_NC_019768(1),PHAGE_Mycoba_Courthouse_NC_023690(1),PHAGE_Vibrio_vB_VpS_PG07_NC_048041(1),PHAGE_Escher_ArgO145_NC_049918(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Salmon_BTP1_NC_042346(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Mycoba_Omega_NC_004688(1),PHAGE_Altero_vB_AcoS_R7M_NC_048878(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Halomo_phiHAP_1_NC_010342(1),PHAGE_Strept_YDN12_NC_028974(1),PHAGE_Shigel_Stx_NC_029120(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Entero_HK446_NC_019714(1),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Escher_phage_NC_004913(1),PHAGE_Pectob_ZF40_NC_019522(1),PHAGE_Salmon_L6jm_NC_048852(1),PHAGE_Escher_vB_EcoS_swan01_NC_048202(1)   25                               42.37%                           51.20%                        
                                  12             36.8Kb                   intact(100)                   tail                                         3240357-3277160          0                        55                      46                               9                                100%                             0                                no                               15                               PHAGE_Burkho_BcepMu_NC_005882(31),PHAGE_Burkho_phiE255_NC_009237(31),PHAGE_Pseudo_B3_NC_006548(13),PHAGE_Pseudo_JBD67_NC_042135(11),PHAGE_Rhizob_RR1_B_NC_021557(9),PHAGE_Pseudo_vB_PaeS_PM105_NC_028667(8),PHAGE_Pseudo_JBD18_NC_027986(8),PHAGE_Pseudo_JBD25_NC_027992(8),PHAGE_Vibrio_X29_NC_024369(4),PHAGE_Escher_D108_NC_013594(4),PHAGE_Entero_SfMu_NC_027382(3),PHAGE_Entero_Mu_NC_000929(3),PHAGE_Escher_500465_1_NC_049342(3),PHAGE_Entero_HK97_NC_002167(2),PHAGE_Bacter_Lily_NC_028841(2),PHAGE_Rhodob_RcapMu_NC_016165(2),PHAGE_Pseudo_JD024_NC_024330(2),PHAGE_Entero_HK106_NC_019768(2),PHAGE_Escher_vB_EcoM_12474III_NC_049457(2),PHAGE_Escher_vB_EcoM_ECOO78_NC_041926(2),PHAGE_Burkho_KS10_NC_011216(2),PHAGE_Pseudo_PPpW_3_NC_023006(2),PHAGE_Vibrio_12B12_NC_021070(2),PHAGE_Escher_pro483_NC_028943(2),PHAGE_Clostr_phiCTC2B_NC_030951(1),PHAGE_Pseudo_JBD24_NC_020203(1),PHAGE_Faecal_FP_Taranis_NC_047914(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Entero_phiT5282H_NC_049429(1),PHAGE_Escher_500465_2_NC_049343(1),PHAGE_Burkho_AP3_NC_047752(1),PHAGE_Aeromo_phiA8_29_NC_048660(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Pseudo_MP42_NC_018274(1),PHAGE_Escher_503458_NC_049341(1),PHAGE_Pseudo_JBD93_NC_030918(1),PHAGE_Cellul_phi10:1_NC_021802(1),PHAGE_Clostr_phiCT19406B_NC_030947(1),PHAGE_Burkho_KS9_NC_013055(1),PHAGE_Vibrio_VP882_NC_009016(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Brevib_Osiris_NC_028969(1),PHAGE_Entero_P2_NC_001895(1),PHAGE_Butyri_Arawn_NC_048848(1),PHAGE_Faecal_FP_Epona_NC_047910(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Ralsto_RsoM1USA_NC_049432(1),PHAGE_Erwini_ENT90_NC_019932(1),PHAGE_Stenot_Smp131_NC_023588(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Brevib_Jimmer1_NC_029104(1),PHAGE_Shigel_Sf6_NC_005344(1),PHAGE_Burkho_phi52237_NC_007145(1),PHAGE_Pseudo_JBD30_NC_020198(1),PHAGE_Burkho_ST79_NC_021343(1),PHAGE_Escher_P2_NC_041848(1),PHAGE_Pseudo_MP38_NC_011611(1),PHAGE_Pseudo_JBD5_NC_020202(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Klebsi_ST147_VIM1phi7.1_NC_049451(1),PHAGE_Burkho_phiE202_NC_009234(1),PHAGE_Pseudo_PA1phi_NC_023700(1),PHAGE_Brevib_Jimmer2_NC_041976(1),PHAGE_Salmon_SP_004_NC_021774(1),PHAGE_Pseudo_MP29_NC_011613(1)   31                               56.36%                           54.94%                        
                                  13             49.5Kb                   intact(150)                   integrase,recombinase,portal,terminase,capsid,head,tail,lysin,plate     3290257-3339838          0                        57                      50                               7                                100%                             0                                yes                              9                                PHAGE_Entero_P88_NC_026014(41),PHAGE_Escher_520873_NC_049344(30),PHAGE_Escher_503458_NC_049341(26),PHAGE_Escher_500465_2_NC_049343(22),PHAGE_Entero_phiT5282H_NC_049429(18),PHAGE_Klebsi_ST16_OXA48phi5.4_NC_049450(8),PHAGE_Klebsi_3LV2017_NC_047817(5),PHAGE_Escher_RCS47_NC_042128(4),PHAGE_Salmon_SEN5_NC_028701(3),PHAGE_Escher_pro147_NC_028896(3),PHAGE_Escher_ArgO145_NC_049918(2),PHAGE_Entero_P2_NC_001895(2),PHAGE_Entero_SfMu_NC_027382(2),PHAGE_Escher_D108_NC_013594(2),PHAGE_Escher_pro483_NC_028943(2),PHAGE_Entero_Mu_NC_000929(2),PHAGE_Bacill_G_NC_023719(2),PHAGE_Bacill_SP_15_NC_031245(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Mycoba_Courthouse_NC_023690(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Mycoba_Baka_NC_042316(1),PHAGE_Escher_Lys12581Vzw_NC_049917(1),PHAGE_Stx2_c_86_NC_008464(1),PHAGE_Salmon_SEN4_NC_029015(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Stx2_c_Stx2a_WGPS9_NC_049923(1),PHAGE_Klebsi_ST15_OXA48phi14.1_NC_049454(1),PHAGE_Mycoba_Minerva_NC_026584(1),PHAGE_Mycoba_MiaZeal_NC_028953(1),PHAGE_Vibrio_SSP002_NC_041910(1),PHAGE_Dinoro_vB_DshS_R5C_NC_041921(1),PHAGE_Salmon_SEN8_NC_047753(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Stx2_c_Stx2a_F451_NC_049924(1),PHAGE_Escher_P2_NC_041848(1),PHAGE_Entero_fiAA91_ss_NC_022750(1),PHAGE_Mycoba_Ariel_NC_028876(1),PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453(1),PHAGE_Entero_WPhi_NC_005056(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Salmon_9NA_NC_025443(1),PHAGE_Yersin_L_413C_NC_004745(1)   41                               71.92%                           52.02%                        
                                  14             6.8Kb                    incomplete(30)                capsid,transposase                           3972561-3979360          0                        9                       6                                3                                100%                             0                                no                               6                                PHAGE_Entero_P1_NC_005856(2),PHAGE_Mycoba_SirPhilip_NC_051627(1),PHAGE_Mycoba_ScottMcG_NC_011269(1),PHAGE_Mycoba_Amgine_NC_051605(1),PHAGE_Escher_RCS47_NC_042128(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Bacill_Moonbeam_NC_027374(1),PHAGE_Bacill_Mater_NC_027366(1),PHAGE_Cronob_ENT39118_NC_019934(1),PHAGE_Coryne_Dina_NC_048787(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Gordon_Cucurbita_NC_031029(1),PHAGE_Bacill_TsarBomba_NC_028890(1),PHAGE_Coryne_SamW_NC_048069(1)   1                                22.22%                           52.19%                        
                                  15             4.6Kb                    incomplete(50)                transposase                                  4431553-4436202          0                        7                       6                                1                                100%                             0                                no                               4                                PHAGE_Escher_SH2026Stx1_NC_049919(2),PHAGE_Stx2_c_Stx2a_F451_NC_049924(2),PHAGE_Stx2_c_1717_NC_011357(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Escher_PA28_NC_041935(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Escher_RCS47_NC_042128(1)   2                                28.57%                           54.02%                        
                                  16             20.3Kb                   incomplete(60)                transposase,integrase                        4450704-4471043          0                        17                      8                                9                                100%                             0                                yes                              5                                PHAGE_Stx2_c_1717_NC_011357(3),PHAGE_Escher_SH2026Stx1_NC_049919(3),PHAGE_Stx2_c_Stx2a_F451_NC_049924(3),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Synech_S_CAM1_NC_020837(1),PHAGE_Shigel_Sf6_NC_005344(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Synech_S_T4_NC_048049(1),PHAGE_Arthro_Maja_NC_048140(1)   4                                17.64%                           46.30%                        
                                  17             7.6Kb                    intact(120)                   transposase                                  4638688-4646385          0                        12                      11                               1                                100%                             0                                no                               4                                PHAGE_Escher_SH2026Stx1_NC_049919(3),PHAGE_Stx2_c_1717_NC_011357(3),PHAGE_Stx2_c_Stx2a_F451_NC_049924(3),PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Mannhe_vB_MhM_587AP1_NC_028898(1),PHAGE_Escher_RCS47_NC_042128(1),PHAGE_Mannhe_vB_MhM_1127AP1_NC_047750(1)   6                                25%                              52.77%                        
                                  18             8.5Kb                    incomplete(40)                tail,transposase,plate                       4689328-4697869          0                        9                       6                                3                                100%                             0                                no                               6                                PHAGE_Entero_BP_4795_NC_004813(2),PHAGE_Klebsi_ST437_OXA245phi4.1_NC_049448(1),PHAGE_Morgan_vB_MmoM_MP1_NC_031020(1),PHAGE_Entero_vB_KleM_RaK2_NC_019526(1),PHAGE_Entero_PG7_NC_023561(1),PHAGE_Serrat_BF_NC_041917(1),PHAGE_Acinet_Berthold_NC_049490(1),PHAGE_Yersin_fHe_Yen9_04_NC_042116(1),PHAGE_Acinet_vB_ApiM_fHyAci03_NC_049438(1),PHAGE_Acinet_AM101_NC_049511(1),PHAGE_Prochl_P_TIM68_NC_028955(1),PHAGE_Acinet_KARL_1_NC_049441(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Acinet_ZZ1_NC_018087(1)   1                                22.22%                           50.32%                        
