Submission Results

Sequence Name: Armatimonadetes bacterium CG_4_8_14_3_um_filter_58_9, whole genome

GenBank Accession Number: PFIR00000000.1

GenInfo (GI) Number: 1278180470

Download Results: PFIR00000000.1.PHASTER.zip

gi|00000000|ref|| Armatimonadetes bacterium CG_4_8_14_3_um_filter_58_9, whole genome [asmbl_id: NC_000000].5052025, gc%: 58.36%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
116Kbincomplete40164900225-4916296 info_outlinePHAGE_Pseudo_NP1_NC_031058(9)53.88%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|| Armatimonadetes bacterium CG_4_8_14_3_um_filter_58_9, whole genome [asmbl_id: NC_000000].5052025, gc%: 58.36%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 16 CDS

#CDS PositionBLAST HitE-ValueSequence
14900225..4900408PHAGE_Pseudo_NP1_NC_031058: hypothetical protein; COZ56_21310; phage(gi100009)1.46e-26Showinfo_outline
24900470..4900985PHAGE_Pseudo_NP1_NC_031058: hypothetical protein; COZ56_21315; phage(gi100010)4.37e-43Showinfo_outline
34901040..4901723PHAGE_Vibrio_VpKK5_NC_026610: hypothetical protein; COZ56_21320; phage(gi764162160)6.72e-12Showinfo_outline
44901835..4902410PHAGE_Pseudo_NP1_NC_031058: hypothetical protein; COZ56_21325; phage(gi100013)9.46e-22Showinfo_outline
54902407..4902796hypothetical protein; COZ56_213300.0Showinfo_outline
64902983..4903228PHAGE_Phage_phiJL001_NC_006938: gp77; COZ56_21335; phage(gi62327181)7.68e-16Showinfo_outline
74903240..4904754PHAGE_Pseudo_NP1_NC_031058: hypothetical protein; COZ56_21340; phage(gi100016)3.01e-147Showinfo_outline
84904835..4905335PHAGE_Pseudo_NP1_NC_031058: hypothetical protein; COZ56_21345; phage(gi100017)1.22e-23Showinfo_outline
94905446..4905658hypothetical protein; COZ56_213500.0Showinfo_outline
104905651..4906226PHAGE_Pseudo_NP1_NC_031058: hypothetical protein; COZ56_21355; phage(gi100019)3.80e-09Showinfo_outline
114906226..4909684PHAGE_Pseudo_NP1_NC_031058: hypothetical protein; COZ56_21360; phage(gi100020)9.65e-40Showinfo_outline
124909687..4910334PHAGE_Rhodob_RcRhea_NC_028954: tail protein; COZ56_21365; phage(gi971760176)2.76e-54Showinfo_outline
134910334..4911230PHAGE_Rhodob_RcRhea_NC_028954: minor tail protein; COZ56_21370; phage(gi971760178)4.57e-59Showinfo_outline
144911240..4911671PHAGE_Roseob_1_NC_015466: phage cell wall peptidase; COZ56_21375; phage(gi331028137)3.45e-30Showinfo_outline
154911674..4915729PHAGE_Rhodob_RcRhea_NC_028954: tail protein; COZ56_21380; phage(gi971760180)0.0Showinfo_outline
164915726..4916296PHAGE_Pseudo_NP1_NC_031058: hypothetical protein; COZ56_21385; phage(gi100028)3.59e-17Showinfo_outline
Armatimonadetes bacterium CG_4_8_14_3_um_filter_58_9, whole genome
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 5052025 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download