Submission Results

Sequence Name: Not Available

GenBank Accession Number: PGCW01000055.1

GenInfo (GI) Number: 0000000000

Download Results:

gi|00000000|ref|PGCW01000055.1| Enterococcus faecalis strain G701R2B0C1 140866, gc%: 37.82%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
122.1Kbquestionable902997-22267 info_outlinePHAGE_Entero_phiFL4A_NC_013644(26)37.38%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|PGCW01000055.1| Enterococcus faecalis strain G701R2B0C1 140866, gc%: 37.82%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 29 CDS

#CDS PositionBLAST HitE-ValueSequence
197..417PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; CUR52_00605; phage(gi281416461)1.02e-71Showinfo_outline
2424..1788PHAGE_Entero_phiFL4A_NC_013644: DNA helicase; CUR52_00610; phage(gi281416462)0.0Showinfo_outline
31791..1991hypothetical protein; CUR52_006150.0Showinfo_outline
41972..2412PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; CUR52_00620; phage(gi281416463)1.53e-101Showinfo_outline
52499..2948PHAGE_Entero_phiFL4A_NC_013644: terminase small subunit; CUR52_00625; phage(gi281416464)1.97e-75Showinfo_outline
62945..4201PHAGE_Entero_phiFL4A_NC_013644: terminase large subunit; CUR52_00630; phage(gi281416465)0.0Showinfo_outline
7complement(4350..4568)PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; CUR52_00635; phage(gi281416467)9.99e-43Showinfo_outline
84651..6183PHAGE_Entero_phiFL4A_NC_013644: portal protein; CUR52_00640; phage(gi281416468)0.0Showinfo_outline
96113..7576PHAGE_Entero_phiFL4A_NC_013644: phage head protein; CUR52_00645; phage(gi281416469)0.0Showinfo_outline
107569..7772hypothetical protein; CUR52_006500.0Showinfo_outline
117923..8129PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; CUR52_00655; phage(gi281416471)8.94e-43Showinfo_outline
128266..8838PHAGE_Entero_phiFL4A_NC_013644: scaffold protein; CUR52_00660; phage(gi281416472)3.40e-125Showinfo_outline
138854..9717PHAGE_Entero_phiFL4A_NC_013644: capsid protein; CUR52_00665; phage(gi281416473)0.0Showinfo_outline
149855..10007PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; CUR52_00670; phage(gi281416474)1.08e-26Showinfo_outline
1510011..10553PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; CUR52_00675; phage(gi281416475)1.26e-128Showinfo_outline
1610553..10891PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; CUR52_00680; phage(gi281416476)1.78e-77Showinfo_outline
1710878..11309PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; CUR52_00685; phage(gi281416477)1.10e-98Showinfo_outline
1811313..11696PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; CUR52_00690; phage(gi281416478)1.76e-88Showinfo_outline
1911683..12642PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; CUR52_00695; phage(gi281416479)0.0Showinfo_outline
20complement(12675..13154)hypothetical protein; CUR52_007000.0Showinfo_outline
2113167..13454PHAGE_Entero_phiFL4A_NC_013644: peptide methionine sulfoxide reductase domain-containing protein; CUR52_00705; phage(gi281416481)8.45e-45Showinfo_outline
2213454..16603PHAGE_Entero_phiFL4A_NC_013644: tail tape measure protein; CUR52_00710; phage(gi281416482)0.0Showinfo_outline
2316617..17492PHAGE_Entero_phiFL4A_NC_013644: tail protein; CUR52_00715; phage(gi281416483)0.0Showinfo_outline
2417492..18577PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; CUR52_00720; phage(gi281416484)0.0Showinfo_outline
2518588..19622PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; CUR52_00725; phage(gi281416485)3.04e-123Showinfo_outline
2619633..20424PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; CUR52_00730; phage(gi281416486)1.58e-08Showinfo_outline
2720500..20754PHAGE_Entero_phiFL4A_NC_013644: holin; CUR52_00735; phage(gi281416487)1.12e-53Showinfo_outline
2820757..20963PHAGE_Entero_phiFL4A_NC_013644: holin; CUR52_00740; phage(gi281416488)9.07e-29Showinfo_outline
2920966..22267PHAGE_Entero_phiFL4A_NC_013644: endolysin; CUR52_00745; phage(gi281416489)0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 140866 bps
Phages: 1
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Portal Protein
Coat Protein
Tail Shaft
Attachment Site
Phage-like Protein
Hypotheical Protein
Fiber Protein
Plate Protein

Download data as .txt file: png_input file_download