Submission Results

Sequence Name: Not Available

GenBank Accession Number: PTVI01000106.1

GenInfo (GI) Number: 0000000000

Download Results: PTVI01000106.1.PHASTER.zip

gi|00000000|ref|PTVI01000106.1| Enterococcus faecalis strain CVM N59896F 32841, gc%: 34.80%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
130.7Kbintact120422117-32841 info_outlinePHAGE_Entero_phiFL3A_NC_013648(14)34.52%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|PTVI01000106.1| Enterococcus faecalis strain CVM N59896F 32841, gc%: 34.80%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 45 CDS

#CDS PositionBLAST HitE-ValueSequence
12117..2129attL0.0Showinfo_outline
28328..8672PHAGE_Entero_phiFL3A_NC_013648: ribosomal protein; CUN05_13535; phage(gi281416258)3.87e-06Showinfo_outline
38685..897250S ribosomal protein L27; CUN05_135400.0Showinfo_outline
4complement(9060..10214)PROPHAGE_Oceano_HTE831: integrase; CUN05_13545; phage(gi23097608)2.16e-89Showinfo_outline
5complement(10280..10747)hypothetical protein; CUN05_135500.0Showinfo_outline
6complement(10789..11244)PHAGE_Anoxyb_A403_NC_048701: tail fiber protein; CUN05_13555; phage(gi100052)2.77e-17Showinfo_outline
7complement(11280..11705)PHAGE_Bacill_BCJA1c_NC_006557: repressor; CUN05_13560; phage(gi56694874)2.85e-38Showinfo_outline
811940..12140PHAGE_Lactoc_bIL312_NC_002671: repressor; CUN05_13565; phage(gi13095896)4.44e-11Showinfo_outline
912153..12437hypothetical protein; CUN05_135700.0Showinfo_outline
1012452..13174PHAGE_Entero_phiFL3A_NC_013648: anti-repressor protein; CUN05_13575; phage(gi281416221)7.62e-57Showinfo_outline
1113768..14091PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; CUN05_13580; phage(gi281416230)3.96e-66Showinfo_outline
1214091..14318PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; CUN05_13585; phage(gi281416337)6.79e-49Showinfo_outline
1314318..14416PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; CUN05_13590; phage(gi281416338)8.47e-13Showinfo_outline
1414413..14688hypothetical protein; CUN05_135950.0Showinfo_outline
15complement(14650..15027)hypothetical protein; CUN05_136000.0Showinfo_outline
1615100..16041PHAGE_Entero_phiFL3A_NC_013648: endonuclease YqaJ superfamily; CUN05_13605; phage(gi281416231)0.0Showinfo_outline
1716044..16934PHAGE_Entero_phiFL3A_NC_013648: RecT family protein; CUN05_13610; phage(gi281416232)0.0Showinfo_outline
1816948..17907PHAGE_Entero_phiFL3A_NC_013648: recombinase; CUN05_13615; phage(gi281416233)0.0Showinfo_outline
1917911..18210PHAGE_Entero_phiFL3A_NC_013648: ArpR DNA binding protein; CUN05_13620; phage(gi281416235)1.30e-56Showinfo_outline
2018228..18653PHAGE_Entero_phiFL3A_NC_013648: resolvase; CUN05_13625; phage(gi281416236)9.39e-84Showinfo_outline
2118650..19411PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; CUN05_13630; phage(gi281416237)9.57e-134Showinfo_outline
2219706..19816restriction endonuclease subunit M; CUN05_136350.0Showinfo_outline
2319838..20023hypothetical protein; CUN05_136400.0Showinfo_outline
2419983..20189hypothetical protein; CUN05_136450.0Showinfo_outline
2520193..20387hypothetical protein; CUN05_136500.0Showinfo_outline
2620400..20624hypothetical protein; CUN05_136550.0Showinfo_outline
2720677..21135PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; CUN05_13660; phage(gi966198995)1.52e-51Showinfo_outline
2821147..21650PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; CUN05_13665; phage(gi281416245)7.58e-54Showinfo_outline
2922267..22788PHAGE_Brocho_NF5_NC_015252: gp53; CUN05_13670; phage(gi327197638)7.57e-13Showinfo_outline
3022825..23081hypothetical protein; CUN05_136750.0Showinfo_outline
3123165..23236tRNA0.0Showinfo_outline
3223669..23836hypothetical protein; CUN05_136850.0Showinfo_outline
3323839..25173PHAGE_Entero_phiFL3A_NC_013648: DNA adenine methyltransferase; CUN05_13690; phage(gi281416249)0.0Showinfo_outline
3425211..25402PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; CUN05_13695; phage(gi281416250)6.31e-35Showinfo_outline
3525539..25727PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; CUN05_13700; phage(gi281416251)7.59e-35Showinfo_outline
3625785..26642PHAGE_Entero_phiFL3A_NC_013648: terminase small subunit; CUN05_13705; phage(gi281416254)7.07e-36Showinfo_outline
3726620..27912PHAGE_Oenoco_phiS11_NC_023571: Phage terminase large subunit; CUN05_13710; phage(gi589286629)0.0Showinfo_outline
3827912..29396PHAGE_Lactoc_ul36_NC_004066: putative portal protein; CUN05_13715; phage(gi21716109)1.63e-104Showinfo_outline
3929389..30315PHAGE_Lactoc_TP901_1_NC_002747: ORF33; CUN05_13720; phage(gi13786564)8.23e-79Showinfo_outline
4030420..31073PHAGE_Entero_vB_IME197_NC_028671: capsid and scaffold protein; CUN05_13725; phage(gi966199012)1.24e-16Showinfo_outline
4131086..31982PHAGE_Lactob_phiJB_NC_022775: major capsid protein; CUN05_13730; phage(gi571797882)1.42e-92Showinfo_outline
4232024..32036attR0.0Showinfo_outline
4332053..32385PHAGE_Lactob_CL2_NC_028835: DNA packaging minor head protein; CUN05_13735; phage(gi971748020)1.42e-11Showinfo_outline
4432382..32657hypothetical protein; CUN05_137400.0Showinfo_outline
4532654..32841PHAGE_Lactoc_Tuc2009_NC_002703: hypothetical protein; CUN05_13745; phage(gi13487842)2.24e-06Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 32841 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download