PHASTER

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Submission Results

Sequence Name: Not Available

GenBank Accession Number: PTVU01000058.1

GenInfo (GI) Number: 0000000000

Download Results: PTVU01000058.1.PHASTER.zip

Summary
Details
Genome Viewer

gi|00000000|ref|PTVU01000058.1| Enterococcus faecalis strain CVM N60392F 12474, gc%: 34.45%

Download summary as .txt file: summary.txt

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

Region	Region Length	Completeness	Score	# Total Proteins	Region Position	Most Common Phage	GC %	Details
1	12.3Kb	incomplete	20	23	24-12362	PHAGE_Entero_phiFL3A_NC_013648(9)	34.44%	Show

Region DNA

>1	 24-12362
CTAATTTTTTGTTAAAAAATTAATTGTTATTTTGCCATGAGGGTCTACAATTAAGTTTTT
AAGTACTGATCTCCAAACAAACCTTTTTTCTTCTTCATCGAAATCATGATAAGTACTTTC
TATATTTTTGTTAAACCAATTCGATTTAAATACTATAGTTTCCTTAGGCTTGACTTGAAC
AATCATCTGTTCAAGCTCTTTTCTATCTTTCTTATATTCGTCTAAACTTATAACCTCATT
AAGATACGCTTTTTTTAACCGTTCTATTTTCTTTAGTATTTTTGAATTATTGTTTTTTTC
AGGAGCAGAAACTGCTATCTTCTTCTGTTTAGCTTCAAAGTTTTCCGCGTCTGCTTTAAT
GTTGTTTAATAAATACTCTTCAAGTATCTCTTCAGCTATATTTATCTTATTTGGGCATTT
ATTTCTTTTATAAGTGTTTCCGTTACAACGGTATACTTTTTTTGTATAATACATCACTGT
GCCATCTTTTTTAATATATTTTCTTTTTCGATAACGTCCAGTCATTTTTTTACCGCAACA
ACTACATACTACCAGTCCTGAAAAGATATAAGTACGTTTTGCTATAGATGAAATATTTTT
ATCTAATAGATTTTGAACCTTCTCAAAGGTTTCCTTATCTACTATGGGAGGACAATAATT
TTTGTTACCAGAAACTTCACCTATATATTTTCTATTCCTTAACATGTGCTTGATTGTTCG
AGAACTTCTTGTAATATCATATTCATTGAATAGATATTCAACAGTTAGGCGTATACTGTT
GTGAATAGAATAATGTTTAAAAATGTCTTTTGCGATAGGTGCATTTTCGTTAGGAATTAA
CTTCTTATCACAGATTTTATAACCAAAAGGAACACTCCCAGTTACTACTTCACCCTTTCT
AATTTTGTTTTCAAATACTGCTTTGATGCGTTCAGACGCCATTTGTGCTTCTAATTCAGC
AAAACTCATTGACTGATTAACAAAGGAACGTCCATAAGCAGTATCAGTATTGAAAAATGG
TTGCGAAACGGCAAGCCATGTTACGCCAGAATTATCTAATATTTCTTGGATATTTAAGTA
ATGACGTAAATTTCTAAACCATCGATCTAATTTGGTAAACAAAATAATATCTATTCTGTT
CTTTTTTATATCTTCTAATAAGCGTTGAAATTCATCGCGGTACAATTTTTGTCCTGAAAT
GCCGTCATCAATATACGTGTCAATGATTGTCAAATTGTCTTGAGTACTTACATAATCTTT
TAAAGTAGCTATTTGTGCGTCTAAACTATCCCCGTGTTTTGCTTGTTGATCAGTAGAAAC
CCTAATGTATAACGCTGCTCTCTTTAGCATAAACGAATCCCCCTATCTTATTTAAAAACT
ACTCTTGGTCTTTCTCAACATTAAGCTTGTTTAATTGTAAAAATAACTGAGCATAATCAG
ATTTAAGCTCTTGGTATTCTTTTTCAGTAAATCTGTGACTAGGTCCTGTACGTAAATTTA
AGTTAATATATTCAATATTCAACTCTTCGCAAAGTCTTTTTTCTACCTCATATTTATTCA
TAATATCCCTCCTTAGAGAATGTATGTTCTTTTTTTGTAAGAAGAAAAGTCCGAGGGTTA
AAATTTATATTTATTTCTTAGCTAACCACGAACTATTCTTCTATAAATTATTTTTTTAAA
CAGATTGGTCTTTAATAGAATACTTTTAAGTCTAATACAAAAGTTCTATAATATAACTTT
TCCAATAATTCTAATTTTTTCATTTTCTAAAATTCTATCTTCATATTTGGTATTGATTGA
TCTCAAAATAATTTGTTTATTTGAGTAGTCTTTAATTACTTTCTTACATGTAACACCATC
ATTATCAATTTCTACGATTGCAATTTCACCATTTTCAACATCACATTGTTTTTTATAAAA
AACAATGCTTCCATCTTTAATTAGCGGTTCCATTGAATCTCCCTGAATATTAATAGCACA
ATCTGCTCCTTCCGGCACGTGTGCGAAAGAGTGCTGTTCAACGTCTATATCTCCATATTC
TAGAACTGCAGGGTTTGCTGCGGTCTTTCCTACCAATGGAACAACTTTTCTATTGCGTGA
TTCCGTTTCAAGAATTTGCTTATCTAATTCTTTCTCGGCAAATATTAATACATTTTTTTG
TCTTTTAGTTTCTAACTTAGCTGAGGTTTCGTTTATTTTCGTTAAAATTTGAGAAAGTGG
TTCTTCTTCAAATCCTAATAGGTATTCTGGACTTGTTTCTAAAGCTTTGGCAAAATCAGC
TATCTTATTAACAGGGAATTGTCTTGTTCTATTTTCGTAACGTGACATTGCGGACTTAGC
TATCCCTACTTTTTCTGCTAATTCAGTGGATGTCATTTTTTTCTGTTTGCGCAAATCTGT
AATTAATGTCATGATCTCATCGTTTGTTCTCAAATTATTCACCTCCTAAGAGAATAATAC
TAATAAAGTTCCCAATAGTCAACAAAAAATGTTCTAATTCGGCACAATTAGTTGACAATC
GGGAATTGTCGATATATCATTAAAGCACATTCATGGATGAATAAAAATCAAGGAGGGAAT
TATTAATATGGAATTTGAACTCAATCGTTTAAAGGCTGAAAGGATTGCTAAGGGTTATTC
GCAAGAAGAATTAGCAAAAAAATTAGGTTGGACCAGAAGTATGTATACAAAACGTGAAAA
TGGTACAGTTTCATTGGGAGTTGACGAACTAGCAAAAATAGCAACAGCATTAGAAATGCC
AGAATCTAGAATATCTATTTTTTTTAATCGTTGAGTTCCCGAATGTCAACAAAGGAGGAG
GGAAGTGTGATATGAATCAAAAGTCGTCAGAAAAAGTAGATATCGATTTATTGGCACAAG
CTTTTGCTGATGTTTTAACGCGACGTACTGGCATACAACATGTTTGTAAAATAAAAAGTA
AAAGTGAATCTAAGAAAAGTGAAGGTAACAGTTATCAGAAAGAAGCTAACTAAAAATGAA
GGGAGAAACAGAATATGCAATTAGTAATAATGAAAAATAAACAAGTGGTAACAAGCAGTT
TACAAGTTGCTGAAACATTTAGAAAACAGCATAAACATGTTTTAGAAGCCATTGATGAAT
TAAAGCAAGGGCTAGCCGAAAATTCGGCAGACTTATTTTATGAAGATATATATGTTCACC
CGCAAAACAAACAATCTTATCGCCAAGTTATCATGAATCGCGACGGCTTCACTTTATTAG
CAATGGGGTTCACTGGTCAAAAGGCATTGCAGTTCAAACTGAAATATATTGAGGCTTTTA
ATCAAATGGAAAAAGAAATTCAACAGCCTAAACTTCCAACCTCGCAAAGAGAATTGGCGA
TGCTTGCTTTATCAGCAAATGAAGAAACAAATGAGCGTGTAGATGTAATTGAAAAAGAAG
TAGCAGACTTAAAAGACAATCAAAAAATCGGTGCAGATGATTATAGCTACTTATCACGTA
GAGTTCATCAACGAGTAGCAGAAGTTGCAAGAGGATTTGGAAAAATCACAAAGGAACAGC
GTGGCAAGCTTTACAAAGATATTAATTCAGGTATTAAGCAAATCACAGGCGTGGGTACTC
GATCACAATTAAGAGAAAAACATTATCCAATCGTAATTGAATATATTAACGACTGGGAGC
CGTCCACAGCCACAAAAACAGTTGTAAGACAAATGAGTTTTGACTTAAACGATATTGCTT
AGGGAGAATATTATGGCTTATACAACTGAACAAGAAAGCTGGATACTCAACCAAATCAAA
AAAGAGCGTAAACAGCTACAAGATGATAGAGCAGCGCTTAGACAATCAGAACAACTGACC
GAAGGAAAAGCATATCAAATTGAAAAAGAACTTGAATTTTTAAGATACTTAGAGATTCAA
AATAGAATGCATATTTAAGGAGAAATGAAATGAGAAAAATTTATAACTTAAGAAGAATTG
CAGTGTTGCTAATCGTTTTCGGATTGGGGTTGATAGTAGGCGGAAATTTTAATCCGATTA
TCCAAAATATATATATCGGCTTATTCATCATTTGGACACTGTTTTATGATCTGGCACTTG
AAGATAGAGAGGTTAAGAAATGACAAGAAAAGACAAATTAGAACAAACGAAAAAACTTGC
TGATTTATGGTACCAGCAACAAAAAAATAAAATATACATTGCGCAACAAAAAGAGCGCAG
AGGGATTGCATGATGAAAAAAGCGACTATGCCGCCAAGCAATTAGTCGCAAAAACATATA
TTGATAGGGGAATTATATCATGAAAGTAGAATTTGATTCAATTGGGAGAATTCATTTACT
TGATGAATCTTCGCCCTATGGTTCTTTAATTTTTGAGAAAGACATTGAAAACGATCATGT
TGCTGTGTATCAAGATAGCGAAGATGAAGAGGTTAGATTTGCATTTGAAAGTTTAGATGA
ATGTGCTTATTTCAAAAAATCTGAATTAATTGAAGGATTAGAAAAAGTTCTTTCATTGTT
GAAAGAGGAGGAACGAAATGAATACTTGCAGTGAAAATTTAGAAAAACTTTTTGATGGTA
TGTATAAATTAAAAAGTAAGTTAACTCAACCGAAATTTGATGCAGAAGTTGCCTATTCGA
CTAAAAAAGGAGCAATGAATTTCCAGTATGCCACTCTTAAAGCGATTGAAGAAGCGATTA
GAAAAGCTGCGCAAGAATCCGAAAGCGGAATTGATTTTCAACAAAATGTTGTCAATGAAA
ATAATGCGTTAAAAGTTACAACAATTATCACTCATATAAGTGGGCAGTATATCATTCATG
GTCCATTTGAATTTCCTGATAGCGGAACAAATCCTCAAGGATTAGGAAGTTTAACAACAT
ATGCAAGACGTTATTCGCTTTCGGCAGCATTTGGAATAGCAGCAGATAAAGACGACGATG
GCCAAACGGCAGCTGAAAAGAACAGCGATACTCCGAAAGTTAATTTGATTAGCGGTAAAC
AGTTAGCTATGTTGAATGATCATATCCGACAACTTTCTGAATTATCAAATTCTGAACTTG
ATTATGTACGCAATGAACTAAGTAAAGAATTAAATATAGATGTCAATGAAAACATGCCAG
CTAGCATGTTCAATAAAGCTATTGGAGTTTTGAGGAAATGGATACAACAATTCCAGCCAC
AACCAGAAGAAAACATTACATGGGGGCAAAAATAATGACAAACGAATTAACAACAGATTT
GCAATTTAATGTTGATTTTAAAGCTAGTGAAATCACTATTCAAAATGAAACACAATTGGC
TGAAATGGTCGATAGCGCCGTTAGTCACTATTCAACAATGATTTTTACTGATGAAAACAT
TCCAGAAGCAAAAAAAGCAAGAGCAGACTTAAACAAAGTTGCGACGTTGCTAGATGATCA
ACGTAAAGTGGTTAAAAATCAATATAATAAGCCGTTAAAAGATTTTGAGAAAAAAATAAA
AAAATATATGAGCCAAATTGAAGATGTTAGCGATGAAATCAATAAAAATATTCAAGCATA
TGAAGAAGCGGAACGTCAGAAGCGATTAGAAAAAATTCAAACAGTAATCGATGAAATGTC
TGAAAACTATAATGTATCAATGGAGGAAATTGAAATTTCCAATTCATGGCTTAACAAGAC
CTCTTTTACAGCTAAAGGAGAGCCAACTAAAAAAATTATTGAAGAGATTACATCTGTGAT
GACAACATTAGCCAATGAAAAAGAACGTATTGAGAACGATAAAAAAATAATTGAAAACTA
TACTAAAGCGGTTGGTTTAGAACCATATTCTTGGGTTGGTTTGATTGATAGCGGGCGTAC
AGCATCAGAATTGATAAAGGAAATTGATTCAGCCTTTGCTTTAAAAAAAGAACAAGAAGA
ACGAGAAAAAGCAAAAAAAGAGCACGACGATGCTATTGCTGCCTTGAAAACTGAAACAAT
CAACAATAAAACAGTTGACACTGAAACAGGCGAAATCATCACAGAAGAAGTGCCAAAAAC
CAGCAGAAAACAACAAGAGAAAACAGTTACGTTAAGACTAACAGCAGAGCATCAAAAGTT
AGTTGCGTTAAACAATTTTATTATTAATAACGGCATTCAAGTGGAAGTGGTTGAATGAAC
CTAGACAACGTTTATTCCGCAGTTATTAAATCTTTAAAAGGTCAAAGGATAACTGCGGAC
ATAAATGAAGTAATTAATATTGAACGGCTTAAAACAATGTACTACGGATATGATGGACCA
AGGGAAGTTGAAATTCGTTTTATTGATCCAAGACAATTTACTGCAGCACAACGAAACTTT
ATATATGCGCTGTTAGGAGATATTAGCAGAGAAACAGGGGATAAAATCTCTTTGTTGAAG
GATATGTTCTATTCACACTTTGAAGAGCTTAGGGGTTATCCTATGAGCTTAAAAAAGGAA
TCAAAAAACACGGTAGACGATGCAACAATTTTAGCAAATATAATTCTTGATTATATTTTT
GAAAATAGCATTCCCTTTAAAAAAGGTTACGATATTTTGCCAGGAAACCAAGAATATTAT
TTTTATAAATGTATTACTAAACGTGTTTGCTGCATTTGTGGAAAAACTAGCGCAGAGATT
GATCATTTTGATAAAGCGTTAGGACGAAGAAACAGAAGGAAAGTTGACCATACAGAATAT
ACATTTGCATCTTTATGTCATTGCCATCATAAAGAAAAACACGATATAGGAATAAAAGCA
TTTAAAGCTAAATATCATGTTAAAGGAATTAAATTAAATCAAAATGCCATCAAAAAGTTA
AACATAGGGGGTTAAACAATGGCAGAAATCAGTTGGATAAAACTAAAAACGACCATGTTC
GATGATGAAAAGATAAAACTTATCCAATCGATGCCAGAAGCCGATGCAATACTAGTGATT
TGGATTCGATTACTAGTATTGGCTGGCAAAACTAATGATGAGGGATTGATCTATATTCAG
AGGAACATGCCTTATACCGAAGAAATGTTAGCGACGTTGTTTTCTAAGCCTGTCAATGTT
GTTCGTTTGGCTTTAATGACTTTACAGCAATTCAATATGATTGATTTAAACGAAGATGGG
TCAATTGCTATTGAAAATTGGGACAAGCACCAAAACATTGAAGGCATGGAAAAAGTACGT
TTGAAAAATGCAGAACGAGTTAGAAAATATCGAGAACGCAAGAAACAACAGGCTTTAGAG
GATAAAAACAGTGGTAACGTTACATGTAACGTTACAGTAACGGATTGTAACGGTACAGAT
AAAGATATAGATAAAGAAATAGATATAGATAAAGATAAAAAGAATAGGTCAAAAACATCT
TGTAAATATTCTGACGAACATTTACGTCTTGCTGAAAAGTTAAAAAATAATTTAATCAAT
GATTTTCCAAGTGAAATGAAAAGAGTGAACATTGAAAAATGGGCTGATACGTTCAGGTTA
ATAGAAGAACGAGATCAAAAAACTATTGCAGCAATTGACTATGTTCTTGATTGGTTACCT
ACAAATTCATTCTGGTTTGGAAACATTAGAAGTGCTTCCAAGCTAAGAACACAGTTTGAA
AAACTAAAATTTGAAATCAAGAATGAAAAAGAACGGGGCCAACAACGAACGACTTACCAA
CGTCAAAATGTTAGAACTGAAAGTTTACCAGAATGGGCAAAAGAATCAAATAACCAGCAA
GAAGAAAAGTTATCGCCAGAAGAGCAAGCGGAACTTGATAGACAAATAAAAGAATTGTTG
GGAGGAGAGTAAATCATGATTGAAATGAGAGTACTTGATTATCGAATTACTAGCGATGAT
AGGCAAGTAATCGTAAATAAAGCGAGACGAAATGAACACGGAGAGTTAACCATTTTGACT
GATAAAGACGGTACACAAAAAGAATCACTCGCTTTGATTGGTTATTATGGCAATTTAAGT
AAGGCTCTCGTCGCAATAGAACGCGATTATGTGCTTTCTAGTGGTAAAACAATACAAACA
GTCAAAGAATACAAAAAAGAGCTAGAATCGATTCACAGCAAGCTAAAACGTGAATTAGAT
TTCGGGGAGGAATTTTAGATGGATGAATTAGTTAAATTAGTGGAAGAGTGGGCGAAAGAA
AAGCGTTTAGATAAAGCAGAGCCTGAAAAGCAAATGCTAAAAGTGATTGAGGAAGTCGGA
GAAGTTGGTGCTGCATTAGCAAGAAACAACGAAAACGACCTAAGAGATGGTATTGGGGAT
GTGATTGTGACGTTAATTATTCTCGCTATGCAAAATAACATGGACTTACACGAATGCTTA
AATCAAGCATATAGAGAAATCAAAAATCGCCAAGGGAAAATGGTAAACGGAGTATTCGTC
AAAGAAGCCGATTTGTAAGGTTCGAGGTGGAAGAGATGCGAATTATTCTACCGATTGAAC
CTAAACCACAAAGTCGTCCAAGATTCGCAAGACGTGGAAATTATGTTCAAACGTACGAAG
ATCGAGCGATGAAAGAATACAAAAATCAAGTAAAGAATTATCTTCGTAAATCAAGAGCAA
AGTTGATTGAAAAAGGGCCAATTTCCGCACATGTGACGTTTTACATCCATCCGCCTAAAT
CAGCTCTAAGCAATAAACAAAAGCGATTAAAGGTAAATATGGAGCGAATGTATTGTGATA
AAAAGCCCGATTTGGACAACTATTTCAAAGCAGTGACAGATGCTGCTGAAGGTATTTTAT
ATAAAAATGATGGTCAAATTGCTGTGATGGTTTGCCAAAAACTGTATAGCATGCGACCGC
GAACAGAAATTGAAATTATGAGTTTGGAGGAAAAGGAATGACGAAAAACAAACTCAGAGA
AACAAAAAGAGCCATTCGTCAGAGAATTCTTTTTTTGACTGGTGATGATGAATCATGGAT
GAATAATCCAGAAATCGTGGAAGAGGTCCAGAGATTATCAAAACGACTGAATTCTAACCT
TATAAACGATAAGCGACCATTACCAAAATTAGAGCCTGACAAGCTGACGAAAGAAGAATA
TCAGCACTTATTAGACTTAGGTTATCAAGTAAACGATATTAAGAAAGCTCTCGGACTTGG
AACAACCACATTTCAAAACTGGCGAAAGGCAAACGGCATAGAAAACATAATTAAGCGAAA
AGAAAATAACAAAGTAGAGGAGACAAAACACATGAAATTTAATTTAAATACAGCAACGTT
ACTTATTTCAGGAAATTTTGGAGTAAAAGCAGAGGAATGTTTAACGATCTCAAAAAGCGG
TCTGGCTTTAAGTGGTCCAGTAGTTCAACGATTGAACAAACCAGAATGGGTCCAACTGTA
TTTAGACGAACAGAACAAAGCGTTATTTGTTTTACCATGTGTGGCAACTGCGGAAGGTGC
AAGAAGTTGTGTAAGTCCTAAGGCAAATAAAAAAACGGGCTATCGAAAAAGCTGGAATGG
TCATGTGTTAAAAAAAGCTGCCGAAGTTGGAGGGTTTAACATTGAAACAGATGTTTACCA
TGTAAAACCAGAAGAAGTTGAAGGATATCCAAACGCTTTAGGATTCGATTTGACAAAGGC
GGTCAAAGTGAATGGGTAAAACTAAATCTAAAATCAAAAAGAAAAAACGTAGATTAAAAG
AAAAAGCTATTGCAAACGGCACATACAGTAAGCGAGGTAAAAGCGATGGTATGTATAAAA
TGCAAGGGACAGATGATTGTCTGGGAAAAAGATAGATACGGTCATTCAAAAGCAACTTCT
TGTCCACTATGCAATAAAAGTGGGCAAAGTGTTGCGAAAAAGTTAGCTGAAATAAAGAAG
AAATAAACGAAAGGAGTGGAGGTTTGGTCGACCACAAAGAATTCTTTACTCCTTTGAGAT
TATGAAAATACTAGAATTATTTGCTGGTACACGATCGATAGGAAAGGCGTTTGAATCACA
GGAACATGAAGTCTTTAGTGTCGAGTGGGATAAGAAACACAAAAATATTGATTGGTATGC
TGACATCGGAAAAATATCTGCAGTGGAAATTTTAGAGAAGTTCGGAAAGCCCGATGTGAT
ATGGGCTAGTCCTGACTGCACAAGCTACAGCATTGCTGCCATTTCCCATCACAGGAAAAA
AGAAAGTGATGGAAACCTTGCGCCAGTTTCAGATTATGCAAAATTCTGCGATGAAGTGAA
TCAACATGTTTTGAGATTGATTGAGGAATTAAATCCAAAATATTGGTTTATTGAAAATCC
TCGTGGAGGAATGCGCAAAATGAACTTTATGAAAGGTTTAACCAGATACACTGTAACCTA
TTGTCAGTATGGCGACAATCGAATGAAACCCACAGACATTTGGACGAATCACCCAGATCC
TTGCTTTAAACCGATGTGTAAGAACGGAGCGCCGTGCCATGTGGCTGCACCTAGAGGGAG
TAGGACAGGCACCCAAGGTTTGAAAGGTAGTATTGAAAGGTCCAGAATTCCAGAAAAATT
ATGCAAGCACATTGTAAGCATTTGTGAAAAATAAATAGAAAGGAGCGGGAGATTTGCGGC
CGCATAAAAAGCTTTTTGCTCCTTTGAAATTATGCAGAGAGAACCGAAAATACAATTATT
TAACGATCATTTTCAAAATTATAAACGATACGGCATACCGAAAGCACAATTAGTTATTGC
AGACATACCGTACAACTTAGGTAAAAATGCTTATGCATCCAGTTCTGCATGGTATGAGGG
TGGAAAAATTGAAAATGGAGAATCGGATAAAGCGAATAAAAGCTTTTTTGACACCGATGA
GAATTTTAGAATATCAGAGTTTATGCATTTTTGCTCAAAAATGTTAAAGAAAGAACCTAA
AGAAGTTGGAAAAGCGCCAGCTATGATTGTATTTTGCGCTTTTCAACAGCTTCAAATGGT
GATTGATTATGGTAAACGGTACGGCTTTAAAAATCACATTCCACTAGTTTTTATTAAGAA
GTCCAGTCCTCAAGTACTAAAAGCAAATATGAGGATCGTAGGGGCTACAGAATATGCACT
AGTTCTTTACAGAGAAAAACTTCCCAAATTCAATAACGACGGCCGTATGGTTCTAAATTG
GTTTGAATGGGAAACGGATAACAGCTACCCAAAAATACATCCGACACAAAAACCGGTACC
CGTTATTAAACGGTTAATTGAAATTTTCACAGATTATGGGGATGTTGTAATAGATCCATG
CGCTGGTAGTGGCTCTACGCTTAGAGCTGCAGCAGAACTCAATAGAAATGCTTATGGCTT
TGAAATAAAGAAAGAGATGCACGAAGTTGCACAGGAAAAAATGTTGTCAAATATCCCAAT
GGGGCTATTTATATGAATTGGAGAACAGCTGTCATTATTTTAGAAAGTGAGTGAAGAAGA
TGATTCCAAAGTTTAGAGCAAGAAATGAACGAGGAAACTGGCATGTTGGACTTCTGACTT
TTATGTTTGGCCAATATGCCATCGTAAATGAAACAGATGAAAATACGGTTTATCTGATTG
ATAAGGAAACAGTCGGACAATCAACAGGCTTGAAAGACAAGAACGGCGTTGAAATTTTTG
AGGGTGATATTTGCATCCAACGTGGCGAAGAACCTTACTCTGATGAAAATATGACATTGG
ATGATGATTGGGAATACACAGGTATTATTAAGTTTCAGGATTTTGCATATTGGCTTCAGG
ACAATGAAGGTTTCTCAAAATGGTTGGGAACGGATTATGACGAAATTGAAGTAATCGGCA
ATGTATGGGATAACCCAGAACTATTGGAGGGAACAGAATGAGTGAATTAAGACATCAAGA
AATAATTGATCGGGTCCATCACATGTATTTACAGACGGACGGAATAATAGAATTTCCGAA
TAGCTTCGAAGGAGACTTGTTAAAAATAGCATATGGAACTGCGGTTCAATCAATTAAGCA
ATCGCAGCTCAACGAAAGTCAGCAGATTGTGCTGGATTGGTTGAAAGAATCATGCAAATT
AAATGGATTACGTGAAGTTATTGAAATCATGGGATTTTTGCCAACTACTGGTGGAAAAAT
GAAGTATAAGCAAATAGCTTATGCATATGCTGATTTAAATGAGGTTGAATTAGCGCAAGT
TATCCAAGCATTTAGCCAGTGGGCTATTGAACAGGAGGAAGCTGAATGAGTCTTGAAAAA
TGCAAAGCATGTTCTGACTATTTCAAATGGGATGACGACGTTATACAAGTAGACAATGAT
TATTATCATAGAGACTGTGTAACGTTATACCCAACTGGCTATTGCGCTTTCCTTTATGAG
GACTGTTTAGGAGAAACGGAAAATGATGATGGTGATATGGCTTTTAGTCTTTTGAGTAAG
GGTGAGTATATAGATTTGGATGAGGAGGAAACGGAATGA

Region Details

Region	1
Region Length	12.3Kb
Completeness(score)	incomplete(20)
Specific Keyword	integrase
Region Position	24-12362
# tRNA	0
# Total Proteins	23
# Phage Hit Proteins	22
# Hypothetical Proteins	1
Phage + Hypothetical Protein %	100%
# Bacterial Proteins	0
Attachment Site	no
# Phage Species	9
Most Common Phage Name(hit genes count)	PHAGE_Entero_phiFL3A_NC_013648(9) PHAGE_Entero_phiFL1A_NC_013646(9) PHAGE_Entero_vB_IME197_NC_028671(8) PHAGE_Entero_phiEf11_NC_013696(8) PHAGE_Entero_phiFL2A_NC_013643(7) PHAGE_Lactob_Sha1_NC_019489(4) PHAGE_Entero_EFLK1_NC_029026(2) PHAGE_Entero_EFC_1_NC_025453(2) PHAGE_Entero_ECP3_NC_027335(2) PHAGE_Lactob_CL1_NC_028888(2) PHAGE_Oenoco_phiS13_NC_023560(1) PHAGE_Lactob_phig1e_NC_004305(1) PHAGE_Bacill_vB_BceM_Bc431v3_NC_020873(1) PHAGE_Strept_315.5_NC_004588(1) PHAGE_Brocho_NF5_NC_015252(1) PHAGE_Lister_A500_NC_009810(1) PHAGE_Staphy_JS01_NC_021773(1) PHAGE_Staphy_Ipla7_NC_018284(1) PHAGE_Brocho_BL3_NC_015254(1) PHAGE_Entero_phiEF24C_NC_009904(1) PHAGE_Bacter_B40_8_NC_011222(1) PHAGE_Strept_phiARI0462_NC_031942(1) PHAGE_Bacill_JBP901_NC_027352(1) PHAGE_Entero_EFDG1_NC_029009(1) PHAGE_Bacill_PM1_NC_020883(1) PHAGE_Staphy_phiRS7_NC_022914(1) PHAGE_Oenoco_phiS11_NC_023571(1) PHAGE_Staphy_80alpha_NC_009526(1) PHAGE_Deep_s_D6E_NC_019544(1) PHAGE_Staphy_phi7401PVL_NC_020199(1) PHAGE_Lactoc_BM13_NC_021861(1) PHAGE_Strept_A25_NC_028697(1) PHAGE_Lactob_LL_H_NC_009554(1) PHAGE_Bacill_BM15_NC_042140(1) PHAGE_Lactoc_Tuc2009_NC_002703(1) PHAGE_Staphy_ROSA_NC_007058(1) PHAGE_Clostr_phiCD27_NC_011398(1) PHAGE_Bacill_Blue_NC_031056(1) PHAGE_Lister_LP_101_NC_024387(1) PHAGE_Entero_phiFL4A_NC_013644(1) PHAGE_Lactob_Lrm1_NC_011104(1) PHAGE_Lactob_PL_1_NC_022757(1) PHAGE_Gordon_GMA4_NC_030939(1) PHAGE_Strept_7201_NC_002185(1) PHAGE_Lister_LP_030_2_NC_021539(1) PHAGE_Lactob_iLp1308_NC_028911(1)
First Most Common Phage #	9
First Most Common Phage %	39.13%
GC %	34.44%

Region:	The number assigned to the region.
Region Length:	The length of the sequence of that region (in bp).
Completeness:	A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Specific Keyword:	The specific phage-related keyword(s) found in protein name(s) in the region.
Region Position:	The start and end positions of the region on the bacterial chromosome.
# tRNA:	The number of tRNA genes present in the region.
# Total Proteins:	The number of ORFs present in the region.
# Phage Hit Proteins:	The number of proteins in the region with matches in the phage protein database.
# Hypothetical Proteins:	The number of hypothetical proteins in the region without a match in the database.
Phage + Hypothetical Protein %:	The combined percentage of phage proteins and hypothetical proteins in the region.
# Bacterial Proteins:	The number of proteins in the region with matches in the nrfilt database.
Attachment Site:	The putative phage attachment site.
# Phage Species:	The number of different phages that have similar proteins to those in the region.
Most Common Phage:	The phage(s) with the highest number of proteins most similar to those in the region.
First Most Common Phage #:	The highest number of proteins in a phage most similar to those in the region.
First Most Common Phage %:	The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins.
GC %:	The percentage of GC nucleotides of the region.

Intact (score > 90)

Questionable (score 70-90)

Incomplete (score < 70)

Region:	The number assigned to the region.
Region Length:	The length of the sequence of that region (in bp).
Completeness:	A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score:	The score of the region based on the above criteria.
# Total Proteins:	The number of ORFs present in the region.
Region Position:	The start and end positions of the region on the bacterial chromosome.
Most Common Phage:	The phage(s) with the highest number of proteins most similar to those in the region.
GC %:	The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.

Method 2:

If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).

Method 3:

If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
If the size of the region is greater than 30 Kb, the score will be increased by 10.
If there are at least 40 proteins in the region, the score will be increased by 10.
If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.

Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|PTVU01000058.1| Enterococcus faecalis strain CVM N60392F 12474, gc%: 34.45%

Download details as .txt file: detail.txt

Hits against Virus and Prophage Database

Hits against Bacterial Database or GenBank File

Region 1, total 23 CDS

#	CDS Position	BLAST Hit	E-Value	Sequence
1	complement(24..1373)	PHAGE_Entero_phiFL1A_NC_013646: integrase; CUN39_13965; phage(gi281416324)	1.73e-175	Show
2	complement(1402..1584)	hypothetical protein; CUN39_13970	0.0	Show
3	complement(1749..2435)	PHAGE_Brocho_BL3_NC_015254: gp32; CUN39_13975; phage(gi327409424)	1.15e-57	Show
4	2611..2817	PHAGE_Lactob_Sha1_NC_019489: Cro family transcriptional regulator; CUN39_13980; phage(gi418489832)	8.59e-21	Show
5	3053..3745	PHAGE_Entero_phiFL1A_NC_013646: anti-repressor protein; CUN39_13985; phage(gi281416331)	4.30e-158	Show
6	3756..3941	PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; CUN39_13990; phage(gi281416332)	1.43e-29	Show
7	3953..4126	PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; CUN39_13995; phage(gi966198978)	2.13e-32	Show
8	4123..4236	PHAGE_Entero_phiEf11_NC_013696: hypothetical protein; CUN39_14000; phage(gi282598721)	8.50e-14	Show
9	4303..4557	PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; CUN39_14005; phage(gi966198981)	2.32e-33	Show
10	4541..5218	PHAGE_Entero_vB_IME197_NC_028671: putative recombination protein; CUN39_14010; phage(gi966198982)	2.19e-155	Show
11	5203..6141	PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; CUN39_14015; phage(gi966198983)	0.0	Show
12	6138..6818	PHAGE_Entero_phiEf11_NC_013696: hypothetical protein; CUN39_14020; phage(gi282598737)	2.55e-125	Show
13	6822..7775	PHAGE_Entero_phiEf11_NC_013696: putative phage replisome organizer; CUN39_14025; phage(gi282598734)	2.07e-145	Show
14	7779..8081	PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; CUN39_14030; phage(gi281416234)	1.27e-66	Show
15	8082..8381	PHAGE_Entero_phiFL1A_NC_013646: DNA binding protein; CUN39_14035; phage(gi281416342)	8.81e-59	Show
16	8399..8824	PHAGE_Entero_phiFL1A_NC_013646: resolvase; CUN39_14040; phage(gi281416343)	3.91e-80	Show
17	8821..9582	PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; CUN39_14045; phage(gi281416344)	2.03e-178	Show
18	9669..9809	PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; CUN39_14050; phage(gi281416346)	1.76e-19	Show
19	9865..10497	PHAGE_Bacill_JBP901_NC_027352: putative C-5 cytosine-specific DNA methylase II; CUN39_14055; phage(gi849251778)	7.92e-124	Show
20	10555..11319	PHAGE_Lactob_Lrm1_NC_011104: DNA methylase; CUN39_14060; phage(gi195661243)	1.23e-143	Show
21	11363..11764	PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; CUN39_14065; phage(gi281416349)	6.57e-38	Show
22	11761..12132	PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; CUN39_14070; phage(gi281416350)	1.38e-40	Show
23	12129..12362	PHAGE_Entero_phiEF24C_NC_009904: hypothetical protein; CUN39_14075; phage(gi158079496)	4.14e-16	Show

Click on a region to see details.

Intact (score > 90)

Questionable (score 70-90)

Incomplete (score < 70)

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Length: 12474 bps

Phages: 1

Click on a region in the genome above to show details here.

Click on a sequence to see details.

Lysis

Terminase

Portal Protein

Protease

Coat Protein

Tail Shaft

Attachment Site

Integrase

Phage-like Protein

Hypotheical Protein

Other

Transposase

Fiber Protein

Plate Protein

tRNA

Download data as .txt file: png_input