Submission Results

Sequence Name: Not Available

GenBank Accession Number: PTYJ01000024.1

GenInfo (GI) Number: 0000000000

Download Results: PTYJ01000024.1.PHASTER.zip

gi|00000000|ref|PTYJ01000024.1| Enterococcus faecalis strain CVM N53405 15465, gc%: 36.95%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
114.9Kbquestionable80171-14988 info_outlinePHAGE_Lactob_Lj928_NC_005354(5)37.06%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|PTYJ01000024.1| Enterococcus faecalis strain CVM N53405 15465, gc%: 36.95%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 17 CDS

#CDS PositionBLAST HitE-ValueSequence
11..1412PHAGE_Lactoc_ul36_NC_004066: putative portal protein; CUS06_05355; phage(gi21716109)5.73e-105Showinfo_outline
21405..2331PHAGE_Lactoc_TP901_1_NC_002747: ORF33; CUS06_05360; phage(gi13786564)1.61e-77Showinfo_outline
32436..3089PHAGE_Entero_vB_IME197_NC_028671: capsid and scaffold protein; CUS06_05365; phage(gi966199012)2.97e-16Showinfo_outline
43102..3998PHAGE_Lactob_phiJB_NC_022775: major capsid protein; CUS06_05370; phage(gi571797882)1.42e-92Showinfo_outline
54069..4401PHAGE_Lactob_CL2_NC_028835: DNA packaging minor head protein; CUS06_05375; phage(gi971748020)1.42e-11Showinfo_outline
64398..4673hypothetical protein; CUS06_053800.0Showinfo_outline
74670..5008PHAGE_Lactob_Lj928_NC_005354: putative major tail protein; CUS06_05385; phage(gi41179323)2.04e-15Showinfo_outline
85005..5397PHAGE_Lactob_Lj928_NC_005354: hypothetical protein; CUS06_05390; phage(gi41179324)5.17e-16Showinfo_outline
95417..6022PHAGE_Lactob_Lj928_NC_005354: hypothetical protein; CUS06_05395; phage(gi41179325)5.20e-34Showinfo_outline
106025..6333PHAGE_Entero_phiEf11_NC_013696: putative phage major tail protein; CUS06_05400; phage(gi282598736)1.37e-15Showinfo_outline
116396..6794PHAGE_Entero_phiEf11_NC_013696: hypothetical protein; CUS06_05405; phage(gi282598743)1.05e-08Showinfo_outline
126863..7168hypothetical protein; CUS06_054100.0Showinfo_outline
137155..11609PHAGE_Erysip_SE_1_NC_029078: tail tape measure protein; CUS06_05415; phage(gi985758890)2.14e-93Showinfo_outline
1411606..12328PHAGE_Lactob_Lj928_NC_005354: hypothetical protein; CUS06_05420; phage(gi41179329)1.38e-23Showinfo_outline
1512328..13773PHAGE_Lactob_Lj928_NC_005354: hypothetical protein; CUS06_05425; phage(gi41179330)2.21e-26Showinfo_outline
1613779..14519hypothetical protein; CUS06_054300.0Showinfo_outline
1714536..14988PHAGE_Entero_EFAP_1_NC_012419: host specificity protein; CUS06_05435; phage(gi225626383)4.05e-20Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 15465 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download