Submission Results

Sequence Name: Not Available

GenBank Accession Number: UFXO01000002.1

GenInfo (GI) Number: 0000000000

Download Results: UFXO01000002.1.PHASTER.zip

gi|00000000|ref|UFXO01000002.1| Corynebacterium jeikeium strain NCTC11913 genome assembly, contig: 2516825, gc%: 61.43%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 1 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
124.4Kbincomplete2027363108-387510 info_outlinePHAGE_Mycoba_MichelleMyBell_NC_023572(2)58.79%Show info_outline
251.3Kbintact15051699036-750371 info_outlinePHAGE_Geobac_E2_NC_009552(3)61.45%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UFXO01000002.1| Corynebacterium jeikeium strain NCTC11913 genome assembly, contig: 2516825, gc%: 61.43%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 29 CDS

#CDS PositionBLAST HitE-ValueSequence
1363108..363119attL0.0Showinfo_outline
2complement(363235..364410)PHAGE_Coryne_Poushou_NC_042139: replication and recombination DNA helicase; NCTC11913_00348; phage(gi100033)8.57e-22Showinfo_outline
3complement(364420..365136)Uncharacterised protein; NCTC11913_003490.0Showinfo_outline
4complement(365149..365535)PHAGE_Coryne_Poushou_NC_042139: RecA-like recombination protein; NCTC11913_00350; phage(gi100035)8.63e-11Showinfo_outline
5complement(365532..365927)DNA-binding protein; NCTC11913_003510.0Showinfo_outline
6366070..366303Uncharacterised protein; NCTC11913_003520.0Showinfo_outline
7366358..367269PHAGE_Staphy_StB12_NC_020490: hypothetical protein; NCTC11913_00353; phage(gi939535483)2.17e-09Showinfo_outline
8367266..367772Uncharacterised protein; NCTC11913_003540.0Showinfo_outline
9367840..368010Uncharacterised protein; NCTC11913_003550.0Showinfo_outline
10368596..368772DNA binding domain, excisionase family; NCTC11913_003560.0Showinfo_outline
11368769..369035Uncharacterised protein; NCTC11913_003570.0Showinfo_outline
12369035..369154Uncharacterised protein; NCTC11913_003580.0Showinfo_outline
13369196..369459Uncharacterised protein; NCTC11913_003590.0Showinfo_outline
14369465..369752Uncharacterised protein; NCTC11913_003600.0Showinfo_outline
15369737..370627PHAGE_Lactob_iA2_NC_028830: recombinase; NCTC11913_00361; phage(gi971747664)1.97e-08Showinfo_outline
16370620..371195PHAGE_Mycoba_Archie_NC_028878: hypothetical protein; NCTC11913_00362; phage(gi971751573)5.19e-33Showinfo_outline
17371182..371535PHAGE_Mycoba_Lolly9_NC_028843: hypothetical protein; NCTC11913_00363; phage(gi971748533)1.37e-17Showinfo_outline
18371522..371851PHAGE_Gordon_Splinter_NC_030927: hypothetical protein; NCTC11913_00364; phage(gi100050)3.64e-09Showinfo_outline
19371829..372713PHAGE_Mycoba_Pipsqueaks_NC_042055: RNA ligase 1; NCTC11913_00365; phage(gi100066)2.33e-33Showinfo_outline
20372695..373234Uncharacterised protein; NCTC11913_003660.0Showinfo_outline
21373240..373731PHAGE_Propio_Anatole_NC_041890: rnaseH; NCTC11913_00367; phage(gi100048)1.10e-16Showinfo_outline
22373712..374143PHAGE_Mycoba_MichelleMyBell_NC_023572: RusA; NCTC11913_00368; phage(gi589890737)6.87e-26Showinfo_outline
23374140..374355Uncharacterised protein; NCTC11913_003690.0Showinfo_outline
24374352..374618Uncharacterised protein; NCTC11913_003700.0Showinfo_outline
25374615..375292Uncharacterised protein; NCTC11913_003710.0Showinfo_outline
26375384..375560Uncharacterised protein; NCTC11913_003720.0Showinfo_outline
27375741..376127Uncharacterised protein; NCTC11913_003730.0Showinfo_outline
28376124..376411PHAGE_Mycoba_Oaker_NC_023578: hypothetical protein; NCTC11913_00374; phage(gi589891126)1.25e-16Showinfo_outline
29387510..387521attR0.0Showinfo_outline

Region 2, total 53 CDS

#CDS PositionBLAST HitE-ValueSequence
1699036..699047attL0.0Showinfo_outline
2complement(701633..703231)PHAGE_Bacill_phBC6A51_NC_004820: Site-specific recombinase; NCTC11913_00660; phage(gi31415812)4.63e-28Showinfo_outline
3complement(703232..704722)PHAGE_Geobac_E2_NC_009552: putative recombinase; NCTC11913_00661; phage(gi148747753)3.28e-22Showinfo_outline
4complement(704688..704903)phage protein; NCTC11913_006620.0Showinfo_outline
5complement(704900..705310)Uncharacterised protein; NCTC11913_006630.0Showinfo_outline
6complement(705796..706638)PHAGE_Propio_B3_NC_041892: DNA primase subunit; NCTC11913_00664; phage(gi100025)1.65e-72Showinfo_outline
7complement(706638..707108)PHAGE_Bacill_IEBH_NC_011167: holin; NCTC11913_00665; phage(gi197261577)1.88e-26Showinfo_outline
8complement(707194..707397)phage protein; NCTC11913_006660.0Showinfo_outline
9complement(707403..707834)PHAGE_Lactob_iA2_NC_028830: hypothetical protein; NCTC11913_00667; phage(gi971747645)1.15e-16Showinfo_outline
10complement(707855..712195)PHAGE_Lactob_iA2_NC_028830: tail protein; NCTC11913_00668; phage(gi971747644)1.88e-61Showinfo_outline
11complement(712282..712968)PHAGE_Lactob_iA2_NC_028830: tail protein; NCTC11913_00669; phage(gi971747643)1.08e-20Showinfo_outline
12complement(712968..715655)PHAGE_Microb_Golden_NC_042117: exonuclease A; NCTC11913_00670; phage(gi100018)1.70e-100Showinfo_outline
13complement(715682..715858)phage protein; NCTC11913_006710.0Showinfo_outline
14complement(715876..716283)phage protein; NCTC11913_006720.0Showinfo_outline
15complement(716296..716892)PHAGE_Paenib_Harrison_NC_028746: major tail protein; NCTC11913_00673; phage(gi971482321)1.21e-27Showinfo_outline
16complement(716911..717255)phage protein; NCTC11913_006740.0Showinfo_outline
17complement(717252..717689)phage protein, HK97 gp10 family; NCTC11913_006750.0Showinfo_outline
18complement(717658..718020)putative phage head-tail adaptor; NCTC11913_006760.0Showinfo_outline
19complement(718024..718338)phage protein; NCTC11913_006770.0Showinfo_outline
20complement(718374..719597)PHAGE_Azospi_Cd_NC_010355: Phage major capsid protein; NCTC11913_00678; phage(gi168495136)1.80e-38Showinfo_outline
21complement(719608..720450)PHAGE_Geobac_E2_NC_009552: putative Clp peptidase; NCTC11913_00679; phage(gi148747731)2.95e-45Showinfo_outline
22complement(720447..721175)PHAGE_Burkho_phi6442_NC_009235: gp4, phage portal protein, HK97 family; NCTC11913_00680; phage(gi134288632)1.09e-58Showinfo_outline
23721397..722536transposase IS1249a; NCTC11913_006810.0Showinfo_outline
24complement(722575..723165)PHAGE_Pseudo_D3_NC_002484: portal protein; NCTC11913_00682; phage(gi9635589)2.81e-34Showinfo_outline
25complement(723195..724793)PHAGE_Gordon_Zirinka_NC_031097: hypothetical protein; NCTC11913_00683; phage(gi100002)1.01e-108Showinfo_outline
26complement(724900..725190)phage protein; NCTC11913_006840.0Showinfo_outline
27complement(725224..725511)phage protein; NCTC11913_006850.0Showinfo_outline
28complement(725706..726041)phage protein; NCTC11913_006860.0Showinfo_outline
29complement(726136..726333)PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; NCTC11913_00687; phage(gi100310)2.12e-09Showinfo_outline
30complement(726336..726986)phage protein; NCTC11913_006880.0Showinfo_outline
31complement(726983..727168)phage protein; NCTC11913_006890.0Showinfo_outline
32complement(727315..728565)PHAGE_Strept_EJ_1_NC_005294: transferase; NCTC11913_00690; phage(gi39653711)1.30e-83Showinfo_outline
33complement(728537..729727)S-adenosylmethionine synthetase; NCTC11913_006910.0Showinfo_outline
34complement(729816..730391)phage protein; NCTC11913_006920.0Showinfo_outline
35complement(730419..730865)PROPHAGE_Brucel_1330: ISBm1, transposase orfB; NCTC11913_00693; phage(gi23501425)1.17e-17Showinfo_outline
36complement(730894..731328)PHAGE_Paenib_Tripp_NC_028930: transposase; NCTC11913_00694; phage(gi971756982)1.36e-19Showinfo_outline
37731368..731934Uncharacterized conserved protein; NCTC11913_006950.0Showinfo_outline
38complement(732154..732531)PHAGE_Bacill_phi105_NC_004167: hypothetical protein; NCTC11913_00696; phage(gi22855043)1.17e-20Showinfo_outline
39complement(732687..733151)phage-associated protein; NCTC11913_006970.0Showinfo_outline
40complement(733148..734509)PHAGE_Entero_phiFL4A_NC_013644: DNA helicase; NCTC11913_00698; phage(gi281416462)5.80e-166Showinfo_outline
41complement(734490..734768)PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; NCTC11913_00699; phage(gi281416461)7.70e-22Showinfo_outline
42complement(734905..737169)PHAGE_Lactob_A2_NC_004112: putative primase; NCTC11913_00700; phage(gi22296557)2.98e-56Showinfo_outline
43complement(737166..737609)PHAGE_Gordon_Splinter_NC_030927: hypothetical protein; NCTC11913_00701; phage(gi100069)3.31e-12Showinfo_outline
44complement(737606..738373)PHAGE_Staphy_37_NC_007055: ORF016; NCTC11913_00702; phage(gi66395745)3.79e-57Showinfo_outline
45738537..739358phage protein; NCTC11913_007030.0Showinfo_outline
46complement(739343..741304)PHAGE_Strept_315.6_NC_004589: putative DNA polymerase A domain; NCTC11913_00704; phage(gi28876473)0.0Showinfo_outline
47complement(741392..741601)phage protein; NCTC11913_007050.0Showinfo_outline
48complement(741619..742173)PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; NCTC11913_00706; phage(gi100017)1.11e-71Showinfo_outline
49complement(742199..743332)PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; NCTC11913_00707; phage(gi100016)9.62e-105Showinfo_outline
50complement(743325..743747)RRNA biogenesis protein rrp5; NCTC11913_007080.0Showinfo_outline
51complement(743744..743986)phage protein; NCTC11913_007090.0Showinfo_outline
52complement(744049..744633)phage protein; NCTC11913_007100.0Showinfo_outline
53750371..750382attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 2516825 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download