Submission Results

Sequence Name: Not Available

GenBank Accession Number: UFXU01000001.1

GenInfo (GI) Number: 0000000000

Download Results: UFXU01000001.1.PHASTER.zip

gi|00000000|ref|UFXU01000001.1| Enterococcus malodoratus strain NCTC12365 genome assembly, contig: 2073467, gc%: 39.48%

Download summary as .txt file: summary.txt file_download

Total: 4 prophage regions have been identified, of which 3 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
140.9Kbintact15061208292-249266 info_outlinePHAGE_Bacill_BCJA1c_NC_006557(10)38.96%Show info_outline
259.9Kbintact15065651592-711504 info_outlinePHAGE_Lactob_phig1e_NC_004305(9)38.00%Show info_outline
342.7Kbintact10025926486-969268 info_outlinePHAGE_Entero_fiAA91_ss_NC_022750(2)36.91%Show info_outline
419.5Kbincomplete60221420161-1439693 info_outlinePHAGE_Entero_fiAA91_ss_NC_022750(2)36.09%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UFXU01000001.1| Enterococcus malodoratus strain NCTC12365 genome assembly, contig: 2073467, gc%: 39.48%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 63 CDS

#CDS PositionBLAST HitE-ValueSequence
1208292..208984PHAGE_Strept_TG1_NC_018853: putative regulator, GntR family; NCTC12365_00212; phage(gi410491962)4.77e-05Showinfo_outline
2complement(208994..209635)protein co-occurring with transport system; NCTC12365_002130.0Showinfo_outline
3209744..210025Uncharacterised protein; NCTC12365_002140.0Showinfo_outline
4210310..211389helicase; NCTC12365_002150.0Showinfo_outline
5211369..211386attL0.0Showinfo_outline
6complement(211400..212773)PHAGE_Entero_EFC_1_NC_025453: site-specific integrase; NCTC12365_00216; phage(gi725950572)1.47e-130Showinfo_outline
7complement(212846..213388)PHAGE_Staphy_StB27_NC_019914: hypothetical protein; NCTC12365_00217; phage(gi431809679)6.33e-06Showinfo_outline
8complement(213462..214118)PHAGE_Lactob_phiJB_NC_022775: transcriptional regulators; NCTC12365_00218; phage(gi571797861)1.37e-61Showinfo_outline
9214282..214533PHAGE_Lactob_Lb_NC_047983: exonuclease; NCTC12365_00219; phage(gi100048)9.03e-22Showinfo_outline
10214535..215260PHAGE_Entero_phiEf11_NC_013696: antirepressor; NCTC12365_00220; phage(gi282598719)1.00e-94Showinfo_outline
11215273..215464Uncharacterised protein; NCTC12365_002210.0Showinfo_outline
12215478..215693Uncharacterised protein; NCTC12365_002220.0Showinfo_outline
13complement(215667..216053)PHAGE_Strept_315.2_NC_004585: hypothetical protein; NCTC12365_00223; phage(gi28876256)5.69e-16Showinfo_outline
14216132..216593PHAGE_Gordon_Splinter_NC_030927: hypothetical protein; NCTC12365_00224; phage(gi100020)3.31e-05Showinfo_outline
15216602..216787Uncharacterised protein; NCTC12365_002250.0Showinfo_outline
16216793..217596PHAGE_Vibrio_vB_VpS_PG07_NC_048041: lysozyme; NCTC12365_00226; phage(gi100110)1.61e-06Showinfo_outline
17217627..219573PHAGE_Bacill_Pookie_NC_027394: hypothetical protein; NCTC12365_00227; phage(gi100031)5.47e-94Showinfo_outline
18219576..219782Uncharacterised protein; NCTC12365_002280.0Showinfo_outline
19219782..220660PHAGE_Brocho_NF5_NC_015252: gp35; NCTC12365_00229; phage(gi327197620)1.41e-115Showinfo_outline
20220653..221381PHAGE_Lister_B054_NC_009813: gp51; NCTC12365_00230; phage(gi157325335)3.20e-70Showinfo_outline
21221393..222151PHAGE_Bacill_Palmer_NC_028926: DnaD/DnaB replication protein; NCTC12365_00231; phage(gi971756452)1.57e-67Showinfo_outline
22222220..222996PHAGE_Lactob_iA2_NC_028830: DNA replication protein; NCTC12365_00232; phage(gi971747669)4.93e-23Showinfo_outline
23222993..223244Uncharacterised protein; NCTC12365_002330.0Showinfo_outline
24223234..223722PHAGE_Lactob_Lenus_NC_047897: tail length tape-measure protein; NCTC12365_00234; phage(gi100057)7.40e-31Showinfo_outline
25223715..224059PHAGE_Strept_phiNJ2_NC_019418: hypothetical protein; NCTC12365_00235; phage(gi414090249)9.55e-11Showinfo_outline
26224079..224267Uncharacterised protein; NCTC12365_002360.0Showinfo_outline
27224268..225104PHAGE_Lister_B054_NC_009813: gp58; NCTC12365_00237; phage(gi157325342)2.25e-14Showinfo_outline
28225299..225496Uncharacterised protein; NCTC12365_002380.0Showinfo_outline
29225528..225839PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; NCTC12365_00239; phage(gi966198993)1.65e-37Showinfo_outline
30225863..226171PHAGE_Entero_EF62phi_NC_017732: hypothetical protein; NCTC12365_00240; phage(gi384519767)2.45e-41Showinfo_outline
31226206..226487PHAGE_Entero_EfV12_phi1_NC_048087: minor tail protein; NCTC12365_00241; phage(gi100056)2.90e-30Showinfo_outline
32226484..226705Uncharacterised protein; NCTC12365_002420.0Showinfo_outline
33226681..226833Uncharacterised protein; NCTC12365_002430.0Showinfo_outline
34226849..227079PHAGE_Clostr_phiCT453A_NC_028991: u-spanin; NCTC12365_00244; phage(gi100032)1.01e-05Showinfo_outline
35227090..227251Uncharacterised protein; NCTC12365_002450.0Showinfo_outline
36227238..227336Uncharacterised protein; NCTC12365_002460.0Showinfo_outline
37227340..227510PHAGE_Lactoc_TP901_1_NC_002747: ORF24; NCTC12365_00247; phage(gi13786555)4.02e-10Showinfo_outline
38227581..228051PHAGE_Brocho_NF5_NC_015252: gp53; NCTC12365_00248; phage(gi327197638)1.12e-11Showinfo_outline
39228670..228828Uncharacterised protein; NCTC12365_002490.0Showinfo_outline
40228984..229208Uncharacterised protein; NCTC12365_002500.0Showinfo_outline
41229227..229763PHAGE_Staphy_TEM123_NC_017968: phage terminase small subunit; NCTC12365_00251; phage(gi388570350)8.38e-28Showinfo_outline
42229747..231039PHAGE_Lister_vB_LmoS_188_NC_028871: terminase large subunit; NCTC12365_00252; phage(gi971750800)3.60e-160Showinfo_outline
43231051..232550PHAGE_Bacill_BCJA1c_NC_006557: portal; NCTC12365_00253; phage(gi56694903)9.15e-128Showinfo_outline
44232550..232810PHAGE_Entero_EFC_1_NC_025453: hypothetical protein; NCTC12365_00254; phage(gi725950548)8.93e-12Showinfo_outline
45232815..233972PHAGE_Bacill_BCJA1c_NC_006557: hypothetical protein; NCTC12365_00255; phage(gi56694905)2.86e-176Showinfo_outline
46234058..234633PHAGE_Bacill_BCJA1c_NC_006557: scaffold; NCTC12365_00256; phage(gi56694907)1.32e-21Showinfo_outline
47234636..235496PHAGE_Lactob_phiJB_NC_022775: major capsid protein; NCTC12365_00257; phage(gi571797882)2.08e-129Showinfo_outline
48235798..236202PHAGE_Bacill_BCJA1c_NC_006557: hypothetical protein; NCTC12365_00258; phage(gi56694910)1.30e-54Showinfo_outline
49236196..236522PHAGE_Bacill_BCJA1c_NC_006557: hypothetical protein; NCTC12365_00259; phage(gi56694911)2.33e-41Showinfo_outline
50236538..236864PHAGE_Bacill_BCJA1c_NC_006557: hypothetical protein; NCTC12365_00260; phage(gi56694912)8.94e-35Showinfo_outline
51236864..237262PHAGE_Bacill_BCJA1c_NC_006557: hypothetical protein; NCTC12365_00261; phage(gi56694913)1.17e-51Showinfo_outline
52237262..237744PHAGE_Bacill_BCJA1c_NC_006557: tail shaft protein; NCTC12365_00262; phage(gi56694914)1.53e-60Showinfo_outline
53238029..238418PHAGE_Bacill_BCJA1c_NC_006557: hypothetical protein; NCTC12365_00263; phage(gi56694915)7.91e-20Showinfo_outline
54238424..238993PHAGE_Bacill_BCJA1c_NC_006557: hypothetical protein; NCTC12365_00264; phage(gi56694916)1.66e-55Showinfo_outline
55238986..242171PHAGE_Leucon_phiLN12_NC_024385: putative phage tail tape measure protein; NCTC12365_00265; phage(gi658607735)1.95e-72Showinfo_outline
56242246..242929PHAGE_Clostr_phiCT19406C_NC_029006: tail protein; NCTC12365_00266; phage(gi971821558)3.23e-07Showinfo_outline
57242926..245127PHAGE_Lister_LP_030_2_NC_021539: putative tail endopeptidase; NCTC12365_00267; phage(gi514051949)3.18e-66Showinfo_outline
58245127..247253PHAGE_Pedioc_clP1_NC_016161: minor tail protein; NCTC12365_00268; phage(gi356870787)1.13e-09Showinfo_outline
59247314..247700PHAGE_Lactoc_lato_NC_004746: hypothetical protein; NCTC12365_00269; phage(gi30089908)2.63e-51Showinfo_outline
60247703..247972holin; NCTC12365_002700.0Showinfo_outline
61247974..248078Uncharacterised protein; NCTC12365_002710.0Showinfo_outline
62248078..249091PHAGE_Lactob_LJ_NC_048680: minor tail protein; NCTC12365_00272; phage(gi100056)1.47e-49Showinfo_outline
63249266..249283attR0.0Showinfo_outline

Region 2, total 72 CDS

#CDS PositionBLAST HitE-ValueSequence
1651592..651603attL0.0Showinfo_outline
2complement(659774..661693)PHAGE_Bacill_G_NC_023719: gp245; NCTC12365_00681; phage(gi593777701)8.47e-13Showinfo_outline
3661897..662535redox-sensitive transcriptional regulator; NCTC12365_006820.0Showinfo_outline
4complement(662564..662902)PHAGE_Strept_Lannister_NC_028827: thioredoxin; NCTC12365_00683; phage(gi971747000)3.57e-06Showinfo_outline
5663035..663105tRNA0.0Showinfo_outline
6complement(663203..663667)PHAGE_Lactob_PL_1_NC_022757: integrase; NCTC12365_00685; phage(gi557308015)4.80e-16Showinfo_outline
7663824..663837attL0.0Showinfo_outline
8complement(663884..664345)PHAGE_Lactob_PL_1_NC_022757: integrase; NCTC12365_00686; phage(gi557308015)1.45e-09Showinfo_outline
9complement(664347..664571)Uncharacterised protein; NCTC12365_006870.0Showinfo_outline
10complement(664729..665562)Protein of uncharacterised function (DUF3037); NCTC12365_006880.0Showinfo_outline
11complement(665567..666328)PHAGE_Staphy_52A_NC_007062: ORF013; NCTC12365_00689; phage(gi66396280)1.53e-09Showinfo_outline
12complement(666469..666621)Uncharacterised protein; NCTC12365_006900.0Showinfo_outline
13complement(666683..667348)PHAGE_Lactob_LJ_NC_048680: hypothetical protein; NCTC12365_00691; phage(gi100061)7.35e-33Showinfo_outline
14complement(667417..667821)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; NCTC12365_00692; phage(gi281416325)2.05e-12Showinfo_outline
15complement(667836..668198)PHAGE_Lister_A006_NC_009815: gp31; NCTC12365_00693; phage(gi157325447)4.45e-18Showinfo_outline
16668365..668607PHAGE_Lister_A006_NC_009815: gp32; NCTC12365_00694; phage(gi157325448)3.03e-15Showinfo_outline
17668607..668861Uncharacterised protein; NCTC12365_006950.0Showinfo_outline
18668953..669489PHAGE_Lactob_iLp84_NC_028783: hypothetical protein; NCTC12365_00696; phage(gi971743099)1.52e-11Showinfo_outline
19669490..669765PHAGE_Brevib_Jimmer2_NC_041976: capsid decoration protein; NCTC12365_00697; phage(gi100066)4.77e-05Showinfo_outline
20669762..669962Uncharacterised protein; NCTC12365_006980.0Showinfo_outline
21670006..670017attL0.0Showinfo_outline
22670016..670171Uncharacterised protein; NCTC12365_006990.0Showinfo_outline
23670122..671069PHAGE_Entero_phiFL1A_NC_013646: endonuclease YqaJ superfamily; NCTC12365_00700; phage(gi281416339)6.58e-157Showinfo_outline
24671070..671993PHAGE_Entero_phiFL1A_NC_013646: RecT family protein; NCTC12365_00701; phage(gi281416340)3.70e-131Showinfo_outline
25672033..672926PHAGE_Entero_phiFL3A_NC_013648: recombinase; NCTC12365_00702; phage(gi281416233)5.60e-94Showinfo_outline
26672946..673197PHAGE_Mycoba_Wildcat_NC_008206: gp13; NCTC12365_00703; phage(gi109521450)8.29e-08Showinfo_outline
27673194..673490Uncharacterised protein; NCTC12365_007040.0Showinfo_outline
28673487..673690Uncharacterised protein; NCTC12365_007050.0Showinfo_outline
29673717..674712PHAGE_Brevib_Jenst_NC_028805: putative recombinase XerD; NCTC12365_00706; phage(gi971744895)4.01e-20Showinfo_outline
30674735..675127PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; NCTC12365_00707; phage(gi281416344)9.62e-07Showinfo_outline
31675172..675633PHAGE_Entero_phiFL2A_NC_013643: DNA cytosine methyltransferase; NCTC12365_00708; phage(gi281416514)1.51e-71Showinfo_outline
32675670..675966Uncharacterised protein; NCTC12365_007090.0Showinfo_outline
33675999..676331PHAGE_Gordon_Orchid_NC_030915: exonuclease; NCTC12365_00710; phage(gi100048)1.57e-22Showinfo_outline
34676360..676641PHAGE_Entero_EfV12_phi1_NC_048087: minor tail protein; NCTC12365_00711; phage(gi100056)2.90e-30Showinfo_outline
35676638..676859Uncharacterised protein; NCTC12365_007120.0Showinfo_outline
36complement(676963..677373)PHAGE_Paenib_phiIBB_Pl23_NC_021865: hypothetical protein; NCTC12365_00713; phage(gi526245054)4.81e-12Showinfo_outline
37678151..678324PHAGE_Lister_LP_030_3_NC_024384: hypothetical protein; NCTC12365_00714; phage(gi658607645)1.84e-22Showinfo_outline
38678321..678599Uncharacterised protein; NCTC12365_007150.0Showinfo_outline
39complement(678845..679804)PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; NCTC12365_00716; phage(gi588498272)2.63e-38Showinfo_outline
40679979..680179Uncharacterised protein; NCTC12365_007170.0Showinfo_outline
41680376..680792PHAGE_Entero_phiFL1A_NC_013646: transcriptional regulator ArpU family; NCTC12365_00718; phage(gi281416357)2.83e-38Showinfo_outline
42681856..681867attR0.0Showinfo_outline
43681905..682150Uncharacterised protein; NCTC12365_007190.0Showinfo_outline
44682312..683121PHAGE_Lister_vB_LmoS_188_NC_028871: terminase small subunit; NCTC12365_00720; phage(gi971750799)1.10e-72Showinfo_outline
45683087..684412PHAGE_Lactob_phig1e_NC_004305: putative terminase large subunit; NCTC12365_00721; phage(gi23455799)0.0Showinfo_outline
46684406..685968PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; NCTC12365_00722; phage(gi23455800)0.0Showinfo_outline
47685971..687110PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; NCTC12365_00723; phage(gi23455801)1.14e-126Showinfo_outline
48687174..687353Uncharacterised protein; NCTC12365_007240.0Showinfo_outline
49687354..687575PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; NCTC12365_00725; phage(gi281416471)9.84e-23Showinfo_outline
50687668..688243PHAGE_Bacill_BCJA1c_NC_006557: scaffold; NCTC12365_00726; phage(gi56694907)6.36e-30Showinfo_outline
51688261..689133PHAGE_Lister_vB_LmoS_188_NC_028871: main capsid protein; NCTC12365_00727; phage(gi971750804)1.36e-90Showinfo_outline
52689210..689605PHAGE_Bacill_BCJA1c_NC_006557: hypothetical protein; NCTC12365_00728; phage(gi56694910)1.20e-18Showinfo_outline
53689602..689949PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; NCTC12365_00729; phage(gi23455805)1.43e-38Showinfo_outline
54689949..690284PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; NCTC12365_00730; phage(gi23455806)3.51e-17Showinfo_outline
55690284..690676PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; NCTC12365_00731; phage(gi23455807)4.04e-35Showinfo_outline
56690689..691180PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; NCTC12365_00732; phage(gi23455808)5.06e-58Showinfo_outline
57691260..691457PHAGE_Entero_AUEF3_NC_042134: hypothetical protein; NCTC12365_00733; phage(gi100063)4.89e-11Showinfo_outline
58691501..691950Uncharacterised protein; NCTC12365_007340.0Showinfo_outline
59691956..692585PHAGE_Lactob_phig1e_NC_004305: hypothetical protein; NCTC12365_00735; phage(gi23455810)2.70e-48Showinfo_outline
60692603..697270PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; NCTC12365_00736; phage(gi23455811)6.99e-162Showinfo_outline
61697271..698095PHAGE_Lister_LP_030_3_NC_024384: tail component protein; NCTC12365_00737; phage(gi658607676)2.13e-51Showinfo_outline
62698104..699126PHAGE_Lister_vB_LmoS_293_NC_028929: putative tail endopeptidase; NCTC12365_00738; phage(gi971756894)1.25e-108Showinfo_outline
63699126..700175PHAGE_Lister_LP_030_3_NC_024384: pectin lyase fold containing protein; NCTC12365_00739; phage(gi658607678)7.28e-31Showinfo_outline
64700176..701993PHAGE_Lister_vB_LmoS_188_NC_028871: putative long tail fiber; NCTC12365_00740; phage(gi971750817)1.00e-07Showinfo_outline
65702004..702348Uncharacterised protein; NCTC12365_007410.0Showinfo_outline
66702349..702462PHAGE_Faecal_FP_Brigit_NC_047909: hypothetical protein; NCTC12365_00742; phage(gi100062)1.40e-08Showinfo_outline
67702500..702625PHAGE_Faecal_FP_Brigit_NC_047909: hypothetical protein; NCTC12365_00743; phage(gi100063)9.73e-11Showinfo_outline
68702674..703084PHAGE_Entero_EF62phi_NC_017732: holin; NCTC12365_00744; phage(gi384519787)1.44e-59Showinfo_outline
69703086..703190Uncharacterised protein; NCTC12365_007450.0Showinfo_outline
70703190..704203PHAGE_Lactob_LJ_NC_048680: minor tail protein; NCTC12365_00746; phage(gi100056)2.82e-51Showinfo_outline
71704478..704491attR0.0Showinfo_outline
72711504..711515attR0.0Showinfo_outline

Region 3, total 32 CDS

#CDS PositionBLAST HitE-ValueSequence
1926486..926497attL0.0Showinfo_outline
2937131..938369PROPHAGE_Escher_CFT073: transposase; NCTC12365_00994; phage(gi26248360)3.09e-29Showinfo_outline
3938359..939099PROPHAGE_Escher_CFT073: transposase/IS protein; NCTC12365_00995; phage(gi26248359)2.89e-50Showinfo_outline
4939461..940498Uncharacterised protein; NCTC12365_009960.0Showinfo_outline
5940515..940730Uncharacterised protein; NCTC12365_009970.0Showinfo_outline
6complement(940753..941433)PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; NCTC12365_00998; phage(gi985761246)4.61e-89Showinfo_outline
7941758..942066PHAGE_Staphy_vB_SscM_1_NC_047767: putative baseplate hub protein; NCTC12365_00999; phage(gi100137)6.63e-23Showinfo_outline
8942396..942818PHAGE_Bacill_Fah_NC_007814: mannose-6-phosphate isomerase; NCTC12365_01000; phage(gi89152516)5.70e-45Showinfo_outline
9943083..943196Uncharacterised protein; NCTC12365_010010.0Showinfo_outline
10943250..943930PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; NCTC12365_01002; phage(gi985761246)1.13e-89Showinfo_outline
11complement(944031..944591)TetR family transcriptional regulator; NCTC12365_010030.0Showinfo_outline
12944776..945714PHAGE_Bacill_G_NC_023719: gp245; NCTC12365_01004; phage(gi593777701)2.85e-12Showinfo_outline
13945701..946594PHAGE_Bacill_G_NC_023719: gp245; NCTC12365_01005; phage(gi593777701)2.26e-15Showinfo_outline
14946595..948064ABC-type transport system involved in multi-copper enzyme maturation, permease component; NCTC12365_010060.0Showinfo_outline
15948499..948510attL0.0Showinfo_outline
16948631..948642attL0.0Showinfo_outline
17948970..950829heavy metal translocating P-type ATPase; NCTC12365_010070.0Showinfo_outline
18951198..951335Uncharacterised protein; NCTC12365_010080.0Showinfo_outline
19complement(951369..952013)PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; NCTC12365_01009; phage(gi985761246)1.19e-82Showinfo_outline
20952955..952966attR0.0Showinfo_outline
21953062..953490DNA-directed RNA polymerase sigma subunit RpoE; NCTC12365_010100.0Showinfo_outline
22953477..953719Helix-turn-helix domain protein; NCTC12365_010110.0Showinfo_outline
23953979..954341PHAGE_Lactoc_bIL312_NC_002671: excisionase; NCTC12365_01012; phage(gi13095898)4.09e-13Showinfo_outline
24954444..955967PHAGE_Lactoc_bIL312_NC_002671: integrase; NCTC12365_01013; phage(gi13095892)1.71e-26Showinfo_outline
25956063..956911ribosome biogenesis GTP-binding protein YlqF; NCTC12365_010140.0Showinfo_outline
26956908..957675ribonuclease HII; NCTC12365_010150.0Showinfo_outline
27957736..958590PHAGE_Thermu_OH2_NC_021784: SMF family protein; NCTC12365_01016; phage(gi526118339)6.34e-34Showinfo_outline
28958692..960770DNA topoisomerase I; NCTC12365_010170.0Showinfo_outline
29960792..962090tRNA (uracil-5-)-methyltransferase; NCTC12365_010180.0Showinfo_outline
30962309..963190PHAGE_Brevib_Jenst_NC_028805: putative recombinase XerD; NCTC12365_01019; phage(gi971744895)2.98e-41Showinfo_outline
31965394..965405attR0.0Showinfo_outline
32969268..969279attR0.0Showinfo_outline

Region 4, total 27 CDS

#CDS PositionBLAST HitE-ValueSequence
11420161..1420172attL0.0Showinfo_outline
21423155..1423167attL0.0Showinfo_outline
31423217..1423402PHAGE_Lister_LP_030_2_NC_021539: hypothetical protein; NCTC12365_01467; phage(gi514051958)2.66e-16Showinfo_outline
41423451..1424284Uncharacterised protein; NCTC12365_014680.0Showinfo_outline
5complement(1424554..1424625)tRNA0.0Showinfo_outline
6complement(1424956..1425969)PHAGE_Lactob_LJ_NC_048680: minor tail protein; NCTC12365_01470; phage(gi100056)3.03e-51Showinfo_outline
7complement(1425969..1426073)Uncharacterised protein; NCTC12365_014710.0Showinfo_outline
8complement(1426075..1426485)PHAGE_Entero_EF62phi_NC_017732: holin; NCTC12365_01472; phage(gi384519787)1.11e-59Showinfo_outline
9complement(1426534..1426659)PHAGE_Faecal_FP_Brigit_NC_047909: hypothetical protein; NCTC12365_01473; phage(gi100063)5.23e-11Showinfo_outline
10complement(1426697..1426810)PHAGE_Faecal_FP_Brigit_NC_047909: hypothetical protein; NCTC12365_01474; phage(gi100062)1.40e-08Showinfo_outline
11complement(1426811..1427155)Uncharacterised protein; NCTC12365_014750.0Showinfo_outline
12complement(1427166..1429016)PHAGE_Entero_EFC_1_NC_025453: glycerophosphodiester phosphodiesterase; NCTC12365_01476; phage(gi725950565)7.66e-15Showinfo_outline
13complement(1429029..1429808)PHAGE_Leucon_1_A4_NC_027987: receptor-binding tail protein; NCTC12365_01477; phage(gi937533142)5.34e-07Showinfo_outline
14complement(1429820..1430869)PHAGE_Lister_P40_NC_011308: gp16; NCTC12365_01478; phage(gi207270790)2.89e-22Showinfo_outline
15complement(1430866..1431570)PHAGE_Lactoc_1358_NC_027120: putative phage structural protein; NCTC12365_01479; phage(gi824479770)1.75e-26Showinfo_outline
16complement(1431625..1432386)PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; NCTC12365_01480; phage(gi557307613)5.71e-52Showinfo_outline
17complement(1432397..1433623)PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; NCTC12365_01481; phage(gi557307612)1.13e-21Showinfo_outline
181433777..1434235PHAGE_Coryne_Juicebox_NC_048070: holin; NCTC12365_01482; phage(gi100034)6.32e-10Showinfo_outline
19complement(1434199..1435158)PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; NCTC12365_01483; phage(gi588498272)2.63e-38Showinfo_outline
201435368..1435979PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; NCTC12365_01484; phage(gi281416384)2.03e-09Showinfo_outline
211435981..1437039Uncharacterised protein; NCTC12365_014850.0Showinfo_outline
221437129..1437329Uncharacterised protein; NCTC12365_014860.0Showinfo_outline
23complement(1437332..1437973)Uncharacterised protein; NCTC12365_014870.0Showinfo_outline
241437989..1438001attR0.0Showinfo_outline
251438180..1438458Uncharacterised protein; NCTC12365_014880.0Showinfo_outline
261438458..1439675PHAGE_Lactob_iLp84_NC_028783: integrase; NCTC12365_01489; phage(gi971743086)1.26e-107Showinfo_outline
271439693..1439704attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 2073467 bps
Phages: 4
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download