Submission Results

Sequence Name: Not Available

GenBank Accession Number: UFYD01000001.1

GenInfo (GI) Number: 0000000000

Download Results: UFYD01000001.1.PHASTER.zip

gi|00000000|ref|UFYD01000001.1| Elizabethkingia meningoseptica strain NCTC10588 genome assembly, 4276887, gc%: 35.69%

Download summary as .txt file: summary.txt file_download

Total: 3 prophage regions have been identified, of which 1 regions are intact, 2 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
17.6Kbincomplete40131037597-1045206 info_outlinePHAGE_Riemer_RAP44_NC_019490(3)35.11%Show info_outline
217.2Kbincomplete30241048399-1065615 info_outlinePHAGE_Cellul_phi39:1_NC_021804(3)32.75%Show info_outline
330.9Kbintact100203630736-3661702 info_outlinePHAGE_Agroba_Atu_ph07_NC_042013(4)37.32%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UFYD01000001.1| Elizabethkingia meningoseptica strain NCTC10588 genome assembly, 4276887, gc%: 35.69%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 13 CDS

#CDS PositionBLAST HitE-ValueSequence
11037597..1038310PHAGE_Bacill_Stahl_NC_028856: co-chaperonin for GroEL; NCTC10588_00966; phage(gi100075)6.42e-22Showinfo_outline
21038307..1038708PHAGE_Cellul_phi4:1_NC_021788: hypothetical protein; NCTC10588_00967; phage(gi526176832)1.61e-06Showinfo_outline
31038766..1038915Uncharacterised protein; NCTC10588_009680.0Showinfo_outline
41038915..1039268PHAGE_Cellul_phi19:3_NC_021789: hypothetical protein; NCTC10588_00969; phage(gi526176989)2.64e-12Showinfo_outline
51039272..1039628Uncharacterised protein; NCTC10588_009700.0Showinfo_outline
61039603..1039851Uncharacterised protein; NCTC10588_009710.0Showinfo_outline
71039862..1040113Uncharacterised protein; NCTC10588_009720.0Showinfo_outline
81040141..1040242Uncharacterised protein; NCTC10588_009730.0Showinfo_outline
9complement(1040267..1041352)PHAGE_Riemer_RAP44_NC_019490: phage head morphogenesis protein; NCTC10588_00974; phage(gi418489902)9.82e-38Showinfo_outline
10complement(1041358..1041834)PHAGE_Riemer_RAP44_NC_019490: hypothetical protein; NCTC10588_00975; phage(gi418489910)3.29e-16Showinfo_outline
11complement(1041840..1042148)Uncharacterised protein; NCTC10588_009760.0Showinfo_outline
12complement(1042165..1043646)PHAGE_Riemer_RAP44_NC_019490: phage portal protein; NCTC10588_00977; phage(gi418489901)5.72e-62Showinfo_outline
13complement(1043680..1045206)PHAGE_Vibrio_CP_T1_NC_019457: putative TerL large-subunit terminase; NCTC10588_00978; phage(gi418489210)3.58e-77Showinfo_outline

Region 2, total 26 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1048399..1048992)PHAGE_Lactoc_P087_NC_012663: ParB-like nuclease domain containing protein; NCTC10588_00984; phage(gi229605023)4.82e-05Showinfo_outline
2complement(1049048..1049413)PHAGE_Persic_P12024S_NC_018271: VRR-NUC domain protein; NCTC10588_00985; phage(gi399528451)3.07e-12Showinfo_outline
3complement(1049394..1049597)Uncharacterised protein; NCTC10588_009860.0Showinfo_outline
4complement(1049934..1051385)PHAGE_Cellul_phi39:1_NC_021804: replicative DNA helicase; NCTC10588_00987; phage(gi526178372)5.99e-83Showinfo_outline
51051227..1051239attL0.0Showinfo_outline
6complement(1051375..1052343)Uncharacterized protein conserved in bacteria; NCTC10588_009880.0Showinfo_outline
7complement(1052340..1052783)PHAGE_Bacill_Phrodo_NC_031100: baseplate hub assembly protein; NCTC10588_00989; phage(gi100106)5.25e-06Showinfo_outline
8complement(1052803..1053228)Uncharacterised protein; NCTC10588_009900.0Showinfo_outline
9complement(1053311..1054021)PHAGE_Flavob_11b_NC_006356: modification methylase; NCTC10588_00991; phage(gi53793641)5.29e-77Showinfo_outline
10complement(1054024..1055883)PHAGE_Cellul_phi17:2_NC_021798: DNA methylase; NCTC10588_00992; phage(gi526177695)3.99e-72Showinfo_outline
11complement(1055887..1056615)PHAGE_Cellul_phi19:3_NC_021789: metallo-beta-lactamase domain-containing protein; NCTC10588_00993; phage(gi526176949)2.07e-71Showinfo_outline
12complement(1056624..1057340)PHAGE_Cellul_phi39:1_NC_021804: hypothetical protein; NCTC10588_00994; phage(gi526178368)2.18e-05Showinfo_outline
13complement(1057333..1057758)PHAGE_Cellul_phi39:1_NC_021804: hypothetical protein; NCTC10588_00995; phage(gi526178367)5.63e-10Showinfo_outline
14complement(1057769..1058641)PHAGE_Pseudo_phi297_NC_016762: putative RecT protein; NCTC10588_00996; phage(gi374531258)3.48e-56Showinfo_outline
15complement(1058715..1060664)PHAGE_Cellul_phi19:3_NC_021789: ATPase containing protein; NCTC10588_00997; phage(gi526176952)3.15e-114Showinfo_outline
16complement(1060684..1061007)Protein of uncharacterised function (DUF3853); NCTC10588_009980.0Showinfo_outline
17complement(1061010..1061105)Uncharacterised protein; NCTC10588_009990.0Showinfo_outline
18complement(1061102..1061284)Uncharacterised protein; NCTC10588_010000.0Showinfo_outline
19complement(1061286..1061630)Bacterial regulatory proteins, luxR family; NCTC10588_010010.0Showinfo_outline
20complement(1061633..1061839)Uncharacterised protein; NCTC10588_010020.0Showinfo_outline
211062042..1062767PHAGE_Entero_phi80_NC_021190: CI transcriptional regulator; NCTC10588_01003; phage(gi824479623)3.12e-11Showinfo_outline
221062781..1063362Uncharacterised protein; NCTC10588_010040.0Showinfo_outline
231063381..1063989Uncharacterised protein; NCTC10588_010050.0Showinfo_outline
241064001..1064318Uncharacterised protein; NCTC10588_010060.0Showinfo_outline
251064261..1064273attR0.0Showinfo_outline
261064299..1065615PHAGE_Cellul_phi46:3_NC_021792: site specific recombinase, tyrosine; NCTC10588_01007; phage(gi526177232)1.15e-09Showinfo_outline

Region 3, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
13630736..3630749attL0.0Showinfo_outline
23635652..3636884PHAGE_Cellul_phi46:3_NC_021792: site specific recombinase, tyrosine; NCTC10588_03433; phage(gi526177232)1.72e-11Showinfo_outline
33637111..3638595Uncharacterized protein containing caspase domain; NCTC10588_034340.0Showinfo_outline
43638878..3640431PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; NCTC10588_03435; phage(gi557307612)5.48e-13Showinfo_outline
53640525..3641229PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; NCTC10588_03436; phage(gi557307613)6.91e-37Showinfo_outline
63641579..3641929Uncharacterised protein; NCTC10588_034370.0Showinfo_outline
7complement(3642065..3642271)3-ketoacyl-(acyl-carrier-protein) reductase; NCTC10588_034380.0Showinfo_outline
83642752..3642916PHAGE_Lactob_phiAT3_NC_005893: putative transposase OrfB; NCTC10588_03439; phage(gi48697274)1.29e-05Showinfo_outline
93643281..3643964Fumarate and nitrate reduction regulatory protein; NCTC10588_034400.0Showinfo_outline
103644076..3644516PHAGE_Synech_S_CRM01_NC_015569: small heat shock protein; NCTC10588_03441; phage(gi333798305)6.08e-11Showinfo_outline
113644599..3645036PHAGE_Cyanop_P_RSM6_NC_020855: heat shock protein; NCTC10588_03442; phage(gi472341577)2.03e-08Showinfo_outline
123645058..3646002YfdX protein; NCTC10588_034430.0Showinfo_outline
133646238..3646627Uncharacterised protein; NCTC10588_034440.0Showinfo_outline
143646709..3646816Uncharacterised protein; NCTC10588_034450.0Showinfo_outline
153646932..3647630Putative neutral zinc metallopeptidase; NCTC10588_034460.0Showinfo_outline
163647646..3648620PHAGE_Agroba_Atu_ph07_NC_042013: putative virion structural protein; NCTC10588_03447; phage(gi100293)2.05e-27Showinfo_outline
173648623..3649111PROPHAGE_Escher_Sakai: ATP-dependent metalloprotease; NCTC10588_03448; phage(gi15833311)3.88e-20Showinfo_outline
183649115..3649414PHAGE_Dinoro_DFL12phi1_NC_024367: putative host-like protein; NCTC10588_03449; phage(gi658311036)1.27e-11Showinfo_outline
193649428..3650057PHAGE_Agroba_Atu_ph07_NC_042013: putative virion structural protein; NCTC10588_03450; phage(gi100292)6.13e-11Showinfo_outline
203650038..3650649PHAGE_Agroba_Atu_ph07_NC_042013: putative virion structural protein; NCTC10588_03451; phage(gi100292)1.63e-58Showinfo_outline
213650662..3652065PHAGE_Agroba_Atu_ph07_NC_042013: putative virion structural protein; NCTC10588_03452; phage(gi100292)2.80e-67Showinfo_outline
223661702..3661715attR0.0Showinfo_outline
Elizabethkingia meningoseptica strain NCTC10588 genome assembly
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 4276887 bps
Phages: 3
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download