Submission Results

Sequence Name: Not Available

GenBank Accession Number: UFYL01000003.1

GenInfo (GI) Number: 0000000000

Download Results: UFYL01000003.1.PHASTER.zip

gi|00000000|ref|UFYL01000003.1| Escherichia coli strain NCTC9056 genome assembly, contig: 5017225, gc%: 50.88%

Download summary as .txt file: summary.txt file_download

Total: 9 prophage regions have been identified, of which 4 regions are intact, 4 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
118.4Kbincomplete302140-18475 info_outlinePHAGE_Entero_DE3_NC_042057(16)55.99%Show info_outline
29.1Kbincomplete508758144-767300 info_outlinePHAGE_Salmon_BPS17W1_NC_042097(2)45.17%Show info_outline
359.8Kbintact150611073915-1133763 info_outlinePHAGE_Entero_mEp460_NC_019716(25)48.75%Show info_outline
450Kbintact150682009761-2059845 info_outlinePHAGE_Entero_lambda_NC_001416(20)50.30%Show info_outline
511Kbincomplete40152340559-2351602 info_outlinePHAGE_Entero_DE3_NC_042057(3)46.92%Show info_outline
67.1Kbincomplete3082366535-2373664 info_outlinePHAGE_Entero_P1_NC_005856(2)51.50%Show info_outline
754.2Kbintact150714251388-4305632 info_outlinePHAGE_Entero_mEp460_NC_019716(25)50.41%Show info_outline
817.1Kbquestionable85174691010-4708157 info_outlinePHAGE_Entero_P4_NC_001609(8)47.84%Show info_outline
939.8Kbintact150604977031-5016832 info_outlinePHAGE_Entero_HK629_NC_019711(18)51.30%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UFYL01000003.1| Escherichia coli strain NCTC9056 genome assembly, contig: 5017225, gc%: 50.88%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 21 CDS

#CDS PositionBLAST HitE-ValueSequence
140..309PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_00247; phage(gi100038)5.72e-33Showinfo_outline
2251..868PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_00248; phage(gi100038)9.57e-84Showinfo_outline
3910..2169PHAGE_Entero_DE3_NC_042057: RegA; NCTC9056_00249; phage(gi100039)0.0Showinfo_outline
42179..2511PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9056_00250; phage(gi100040)7.06e-73Showinfo_outline
52713..3591PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9056_00251; phage(gi100041)0.0Showinfo_outline
63633..4028PHAGE_Entero_DE3_NC_042057: sliding clamp DNA polymerase; NCTC9056_00252; phage(gi100042)1.35e-75Showinfo_outline
74040..4393PHAGE_Entero_DE3_NC_042057: RNA polymerase binding protein; NCTC9056_00253; phage(gi100043)2.11e-79Showinfo_outline
84405..4983PHAGE_Entero_DE3_NC_042057: ssDNA binding protein; NCTC9056_00254; phage(gi100044)3.06e-132Showinfo_outline
94980..5375PHAGE_Entero_DE3_NC_042057: loader of DNA helicase; NCTC9056_00255; phage(gi100045)1.05e-88Showinfo_outline
105383..6123PHAGE_Entero_DE3_NC_042057: late promoter transcription; NCTC9056_00256; phage(gi100046)1.74e-171Showinfo_outline
116139..6561PHAGE_Entero_DE3_NC_042057: dsDNA binding protein; NCTC9056_00257; phage(gi100047)3.97e-95Showinfo_outline
126543..6977PHAGE_Entero_DE3_NC_042057: rnaseH; NCTC9056_00258; phage(gi100048)1.06e-101Showinfo_outline
136970..9549PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC9056_00259; phage(gi100049)0.0Showinfo_outline
149546..9875PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_00260; phage(gi100050)5.12e-76Showinfo_outline
159875..10573PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_00261; phage(gi100051)1.28e-173Showinfo_outline
1610579..11322PHAGE_Entero_mEp460_NC_019716: tail fiber component; NCTC9056_00262; phage(gi428782332)2.12e-180Showinfo_outline
1711319..11867PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_00263; phage(gi100053)3.37e-91Showinfo_outline
1811928..15407PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC9056_00264; phage(gi100054)0.0Showinfo_outline
1915476..16075PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; NCTC9056_00265; phage(gi148609401)3.60e-136Showinfo_outline
2016140..18200PHAGE_Entero_JenP1_NC_029028: tail fiber protein; NCTC9056_00266; phage(gi971767090)0.0Showinfo_outline
2118197..18475PHAGE_Entero_JenP2_NC_028997: hypothetical protein; NCTC9056_00267; phage(gi971763992)2.44e-28Showinfo_outline

Region 2, total 8 CDS

#CDS PositionBLAST HitE-ValueSequence
1758144..760267PHAGE_Salmon_BPS17L1_NC_042096: hypothetical protein; NCTC9056_00996; phage(gi100087)1.27e-63Showinfo_outline
2760431..761201PHAGE_Salmon_BPS17W1_NC_042097: hypothetical protein; NCTC9056_00997; phage(gi100089)8.85e-143Showinfo_outline
3complement(761234..762214)recombinase; NCTC9056_009980.0Showinfo_outline
4complement(762342..763121)PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; NCTC9056_00999; phage(gi557307613)2.46e-71Showinfo_outline
5complement(763121..764143)PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; NCTC9056_01000; phage(gi557307612)4.02e-32Showinfo_outline
6complement(764170..764970)PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; NCTC9056_01001; phage(gi557307613)2.01e-31Showinfo_outline
7complement(764985..766526)PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; NCTC9056_01002; phage(gi557307612)4.85e-11Showinfo_outline
8complement(766641..767300)PHAGE_Burkho_Bcep22_NC_005262: serine recombinase-like protein; NCTC9056_01003; phage(gi158997721)8.05e-19Showinfo_outline

Region 3, total 65 CDS

#CDS PositionBLAST HitE-ValueSequence
11073915..1073926attL0.0Showinfo_outline
21078327..1078338attL0.0Showinfo_outline
31081879..1082625PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; NCTC9056_01295; phage(gi971760361)8.52e-10Showinfo_outline
41082714..1083400GntR family transcriptional regulator; NCTC9056_012960.0Showinfo_outline
51083577..1083780PHAGE_Salmon_SSU5_NC_018843: putative selenium-binding protein YdfZ; NCTC9056_01297; phage(gi410491512)4.86e-18Showinfo_outline
6complement(1083815..1085275)putative sugar dehydrogenase; NCTC9056_012980.0Showinfo_outline
7complement(1085364..1086647)PHAGE_Burkho_phi1026b_NC_005284: gp59; NCTC9056_01299; phage(gi38707949)6.30e-28Showinfo_outline
81087434..1087667PHAGE_Salmon_118970_sal3_NC_031940: base plate hub; NCTC9056_01300; phage(gi100103)9.57e-06Showinfo_outline
91087985..1088575PHAGE_Entero_Mu_NC_000929: Gin; NCTC9056_01301; phage(gi9633542)3.18e-29Showinfo_outline
10complement(1089248..1090906)PROPHAGE_Escher_MG1655: Qin prophage; predicted side tail fibre assembly protein; NCTC9056_01303; phage(gi16129506)8.82e-177Showinfo_outline
111091037..1091774PHAGE_Entero_lambda_NC_001416: hypothetical protein; NCTC9056_01304; phage(gi9626267)4.35e-17Showinfo_outline
12complement(1092336..1092935)PHAGE_Entero_mEp460_NC_019716: Lom protein; NCTC9056_01305; phage(gi428782335)1.01e-136Showinfo_outline
13complement(1093002..1096400)PHAGE_Entero_mEp460_NC_019716: host specificity protein; NCTC9056_01306; phage(gi428782334)0.0Showinfo_outline
14complement(1096461..1097009)PHAGE_Entero_mEp460_NC_019716: tail assembly protein; NCTC9056_01307; phage(gi428782333)3.34e-125Showinfo_outline
15complement(1097006..1097749)PHAGE_Entero_mEp460_NC_019716: tail fiber component; NCTC9056_01308; phage(gi428782332)0.0Showinfo_outline
16complement(1097754..1098452)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9056_01309; phage(gi428782331)4.13e-170Showinfo_outline
17complement(1098462..1098791)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9056_01310; phage(gi428782330)2.54e-77Showinfo_outline
18complement(1098791..1101856)PHAGE_Entero_mEp460_NC_019716: tail length tape measure protein; NCTC9056_01311; phage(gi428782329)0.0Showinfo_outline
19complement(1101828..1102145)PHAGE_Entero_mEp460_NC_019716: tail assembly protein; NCTC9056_01312; phage(gi428782328)9.32e-72Showinfo_outline
20complement(1102166..1102552)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9056_01313; phage(gi428782327)4.98e-85Showinfo_outline
21complement(1102613..1103356)PHAGE_Entero_mEp460_NC_019716: major tail protein; NCTC9056_01314; phage(gi428782326)3.64e-174Showinfo_outline
22complement(1103368..1103769)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9056_01315; phage(gi428782325)8.43e-95Showinfo_outline
23complement(1103766..1104344)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9056_01316; phage(gi428782324)1.76e-134Showinfo_outline
24complement(1104356..1104631)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_01317; phage(gi428782323)2.82e-62Showinfo_outline
25complement(1104624..1104947)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_01318; phage(gi428782322)8.50e-70Showinfo_outline
26complement(1105034..1107061)PHAGE_Entero_mEp460_NC_019716: putative protease/scaffold protein; NCTC9056_01319; phage(gi428782321)0.0Showinfo_outline
27complement(1107006..1107983)PHAGE_Entero_mEp460_NC_019716: portal protein; NCTC9056_01320; phage(gi428782320)0.0Showinfo_outline
28complement(1108014..1108514)PHAGE_Entero_mEp460_NC_019716: portal protein; NCTC9056_01321; phage(gi428782320)4.53e-114Showinfo_outline
29complement(1108514..1108726)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_01322; phage(gi428782319)9.56e-46Showinfo_outline
30complement(1108723..1110822)PHAGE_Entero_mEp460_NC_019716: terminase large subunit; NCTC9056_01323; phage(gi428782318)0.0Showinfo_outline
31complement(1110831..1111358)PHAGE_Entero_mEp460_NC_019716: terminase small subunit; NCTC9056_01324; phage(gi428782317)1.99e-26Showinfo_outline
321111743..1111910Uncharacterised protein; NCTC9056_013250.0Showinfo_outline
33complement(1111931..1112137)PHAGE_Entero_DE3_NC_042057: membrane-associated initiation of head vertex; predicted; phage protein; NCTC9056_01326(gi100034)4.73e-38Showinfo_outline
341112438..1112848PHAGE_Entero_lambda_NC_001416: putative envelope protein; NCTC9056_01327; phage(gi19263396)1.80e-86Showinfo_outline
35complement(1113000..1113173)GnsA/GnsB family transcriptional regulator; NCTC9056_013280.0Showinfo_outline
36complement(1114423..1114920)PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; NCTC9056_01330; phage(gi16765210)1.80e-62Showinfo_outline
37complement(1114917..1115450)PHAGE_Entero_mEp460_NC_019716: endolysin; NCTC9056_01331; phage(gi428782372)1.35e-121Showinfo_outline
38complement(1115447..1115758)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_01332; phage(gi428782371)5.32e-40Showinfo_outline
39complement(1115763..1115969)PHAGE_Entero_mEp460_NC_019716: porin; NCTC9056_01333; phage(gi428782370)2.64e-40Showinfo_outline
401117248..1117460cold shock-like protein CspF; NCTC9056_013350.0Showinfo_outline
41complement(1117882..1118634)PHAGE_Entero_mEp460_NC_019716: late gene regulator; NCTC9056_01336; phage(gi428782366)3.20e-177Showinfo_outline
42complement(1118648..1119697)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_01337; phage(gi428782365)2.80e-140Showinfo_outline
43complement(1120044..1120295)putative prophage protein; NCTC9056_013380.0Showinfo_outline
44complement(1120512..1120667)PHAGE_Entero_933W_NC_000924: host killer protein; NCTC9056_01339; phage(gi9632541)1.17e-25Showinfo_outline
45complement(1120739..1121026)toxin of the RelE-RelB toxin-antitoxin system; NCTC9056_013400.0Showinfo_outline
46complement(1121026..1121265)antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor of relBEF; NCTC9056_013410.0Showinfo_outline
471121798..1122130Qin prophage protein; NCTC9056_013420.0Showinfo_outline
48complement(1122567..1123907)putative integrase/transposase; NCTC9056_013430.0Showinfo_outline
49complement(1123941..1124360)PHAGE_Shigel_Stx_NC_029120: LygF; NCTC9056_01344; phage(gi985761265)1.19e-54Showinfo_outline
50complement(1124401..1125366)PHAGE_Shigel_SfIV_NC_022749: replication protein; NCTC9056_01345; phage(gi557307567)1.53e-68Showinfo_outline
51complement(1125347..1125868)PHAGE_Pectob_ZF40_NC_019522: putative cII repressor; NCTC9056_01346; phage(gi422936652)3.27e-05Showinfo_outline
52complement(1125852..1126079)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_01347; phage(gi100022)1.63e-12Showinfo_outline
531126106..1126564PHAGE_Cronob_phiES15_NC_018454: putative transcriptional repressor DicA; NCTC9056_01348; phage(gi401817574)1.14e-34Showinfo_outline
541126757..1126912PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; NCTC9056_01349; phage(gi472340166)1.81e-11Showinfo_outline
551126914..1127489putative prophage protein; NCTC9056_013500.0Showinfo_outline
561127976..1128164division inhibition protein; NCTC9056_013520.0Showinfo_outline
571128161..1128352putative prophage protein; NCTC9056_013530.0Showinfo_outline
581128436..1128447attR0.0Showinfo_outline
591128446..1129270PHAGE_Pectob_ZF40_NC_019522: putative exonuclease; NCTC9056_01354; phage(gi422936647)2.56e-05Showinfo_outline
601129328..1130917PHAGE_Entero_mEp460_NC_019716: putative exonuclease; NCTC9056_01355; phage(gi428782342)1.28e-71Showinfo_outline
611131005..1131241PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage excisionase; NCTC9056_01356; phage(gi169257269)1.10e-20Showinfo_outline
621131276..1132556PHAGE_Entero_YYZ_2008_NC_011356: putative integrase; Qin; phage prophage; NCTC9056_01357(gi209427727)0.0Showinfo_outline
63complement(1132576..1132686)protein, truncated; NCTC9056_013580.0Showinfo_outline
641132700..1132711attR0.0Showinfo_outline
65complement(1132744..1133763)PHAGE_Synech_S_SM2_NC_015279: zinc-containing alcohol dehydrogenase superfamily protein; NCTC9056_01359; phage(gi326781942)8.41e-19Showinfo_outline

Region 4, total 71 CDS

#CDS PositionBLAST HitE-ValueSequence
12009761..2010693PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; NCTC9056_02207; phage(gi966197797)0.0Showinfo_outline
22010769..2010843tRNA0.0Showinfo_outline
32010814..2010829attL0.0Showinfo_outline
42011005..2012162PROPHAGE_Escher_MG1655: CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase; NCTC9056_02209; phage(gi16130281)0.0Showinfo_outline
5complement(2012093..2012308)PROPHAGE_Xantho_33913: ISxac3 transposase; NCTC9056_02210; phage(gi21231087)2.49e-17Showinfo_outline
62012471..2012824PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; NCTC9056_02211; phage(gi24111655)2.46e-52Showinfo_outline
7complement(2012866..2013609)putative AraC-type regulatory protein encoded in prophage CP-933H; NCTC9056_022120.0Showinfo_outline
8complement(2013774..2014277)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC9056_02213; phage(gi557307573)7.70e-122Showinfo_outline
9complement(2015899..2017893)PHAGE_Entero_9g_NC_024146: side tail fiber; NCTC9056_02215; phage(gi640885143)0.0Showinfo_outline
102018024..2018761PHAGE_Entero_lambda_NC_001416: hypothetical protein; NCTC9056_02216; phage(gi9626267)2.71e-16Showinfo_outline
11complement(2019323..2019922)PHAGE_Entero_BP_4795_NC_004813: outer membrane protein Lom precursor; NCTC9056_02217; phage(gi157166058)1.00e-141Showinfo_outline
12complement(2019989..2023471)PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC9056_02218; phage(gi100054)0.0Showinfo_outline
13complement(2023531..2024103)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_02219; phage(gi100053)1.33e-130Showinfo_outline
14complement(2024100..2024699)PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC9056_02220; phage(gi100052)4.94e-143Showinfo_outline
15complement(2024849..2025547)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_02221; phage(gi100051)7.09e-171Showinfo_outline
16complement(2025547..2025876)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_02222; phage(gi100050)9.95e-75Showinfo_outline
17complement(2025873..2028434)PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC9056_02223; phage(gi100049)0.0Showinfo_outline
18complement(2028427..2028861)PHAGE_Entero_DE3_NC_042057: rnaseH; NCTC9056_02224; phage(gi100048)1.06e-101Showinfo_outline
19complement(2028843..2029265)PHAGE_Entero_DE3_NC_042057: dsDNA binding protein; NCTC9056_02225; phage(gi100047)1.23e-100Showinfo_outline
20complement(2029281..2030000)PHAGE_Entero_DE3_NC_042057: late promoter transcription; NCTC9056_02226; phage(gi100046)6.24e-168Showinfo_outline
21complement(2030016..2030393)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC9056_02227; phage(gi557307573)4.00e-87Showinfo_outline
22complement(2030438..2030713)PHAGE_Entero_P1_NC_005856: InsA; NCTC9056_02228; phage(gi46401643)4.76e-62Showinfo_outline
23complement(2031095..2032192)outer membrane porin; DLP12 prophage; NCTC9056_022290.0Showinfo_outline
242032765..2032980PHAGE_Entero_VT2phi_272_NC_028656: holin; NCTC9056_02230; phage(gi966197762)4.24e-36Showinfo_outline
252032980..2033477PHAGE_Salmon_SEN22_NC_028696: lysin; NCTC9056_02231; phage(gi966201366)2.92e-111Showinfo_outline
262033474..2033932PHAGE_Entero_mEp235_NC_019708: lysis protein Rz; NCTC9056_02232; phage(gi428781868)6.83e-101Showinfo_outline
272034134..2034631PHAGE_Shigel_Ss_VASD_NC_028685: hypothetical protein; NCTC9056_02233; phage(gi966200471)5.48e-122Showinfo_outline
282034628..2034885PHAGE_Stx2_c_1717_NC_011357: hypothetical protein; NCTC9056_02234; phage(gi209447175)1.41e-55Showinfo_outline
29complement(2035380..2035790)PHAGE_Entero_DE3_NC_042057: replication and recombination DNA helicase; NCTC9056_02235; phage(gi100033)2.33e-74Showinfo_outline
302036470..2037015PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC9056_02236; phage(gi100035)1.13e-129Showinfo_outline
312036990..2037322PHAGE_Entero_DE3_NC_042057: DNA polymerase; NCTC9056_02237; phage(gi100036)2.66e-72Showinfo_outline
322037404..2038054PHAGE_Pseudo_MD8_NC_031091: hypothetical protein; NCTC9056_02238; phage(gi100010)3.09e-10Showinfo_outline
332038054..2038401PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9056_02239; phage(gi209447152)4.31e-57Showinfo_outline
342038421..2039992PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9056_02240; phage(gi209447153)0.0Showinfo_outline
352040044..2041627PHAGE_Entero_DE3_NC_042057: DNA polymerase; NCTC9056_02241; phage(gi100036)0.0Showinfo_outline
362041624..2041830PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_02242; phage(gi100037)4.55e-43Showinfo_outline
372041827..2042324PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_02243; phage(gi100038)3.66e-102Showinfo_outline
382042353..2042628PHAGE_Entero_P1_NC_005856: InsA; NCTC9056_02244; phage(gi46401643)4.76e-62Showinfo_outline
392042673..2043050PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC9056_02245; phage(gi557307573)4.00e-87Showinfo_outline
40complement(2043061..2043321)PHAGE_Entero_BP_4795_NC_004813: putative antitermination protein Q; NCTC9056_02246; phage(gi157166023)1.01e-51Showinfo_outline
41complement(2043407..2043544)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; small; phage protein; NCTC9056_02247(gi435439319)2.16e-12Showinfo_outline
42complement(2043544..2043906)PHAGE_Salmon_118970_sal4_NC_030919: membrane-associated initiation of head vertex; NCTC9056_02248; phage(gi100034)5.97e-38Showinfo_outline
43complement(2043903..2044193)PHAGE_Salmon_118970_sal4_NC_030919: replication and recombination DNA helicase; NCTC9056_02249; phage(gi100033)2.58e-42Showinfo_outline
44complement(2044186..2044356)PHAGE_Escher_HK639_NC_016158: NinE; NCTC9056_02250; phage(gi356870663)5.44e-19Showinfo_outline
45complement(2044356..2044811)PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; DNA; phage base-flipping protein; NCTC9056_02251(gi401817579)1.38e-78Showinfo_outline
46complement(2045257..2045634)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC9056_02252; phage(gi557307573)5.38e-88Showinfo_outline
47complement(2045679..2045954)PHAGE_Entero_P1_NC_005856: InsA; NCTC9056_02253; phage(gi46401643)1.08e-60Showinfo_outline
482046063..2047388putative pyridine nucleotide-disulfide oxidoreductase; NCTC9056_022540.0Showinfo_outline
492047595..2047870PHAGE_Entero_P1_NC_005856: InsA; NCTC9056_02255; phage(gi46401643)1.08e-60Showinfo_outline
502047915..2048292PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC9056_02256; phage(gi557307573)5.74e-87Showinfo_outline
51complement(2048930..2049424)PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; NCTC9056_02257; phage(gi100067)2.14e-08Showinfo_outline
52complement(2049571..2049744)PHAGE_Entero_SfI_NC_027339: Ren protein; NCTC9056_02258; phage(gi849250273)3.45e-29Showinfo_outline
53complement(2049741..2050442)PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9056_02259; phage(gi100032)9.74e-169Showinfo_outline
54complement(2050439..2051443)PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9056_02260; phage(gi100031)7.54e-142Showinfo_outline
55complement(2051455..2051994)PHAGE_Entero_phi80_NC_021190: CII decision making protein; NCTC9056_02261; phage(gi824479625)9.37e-85Showinfo_outline
56complement(2052064..2052294)PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9056_02262; phage(gi100029)8.50e-24Showinfo_outline
572052399..2053088PHAGE_Salmon_BTP1_NC_042346: RegA; NCTC9056_02263; phage(gi100039)3.51e-123Showinfo_outline
582053318..2053698PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: recombination endonuclease subunit; NCTC9056_02264; phage(gi100052)6.52e-09Showinfo_outline
592054179..2054385PHAGE_Entero_HK225_NC_019717: Kil protein; NCTC9056_02265; phage(gi428782413)8.22e-37Showinfo_outline
602054461..2054757PHAGE_Escher_PA28_NC_041935: DNA helicase; NCTC9056_02266; phage(gi100021)4.29e-67Showinfo_outline
612054763..2055548PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_02267; phage(gi100013)0.0Showinfo_outline
622055545..2056225PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9056_02268; phage(gi100019)8.19e-169Showinfo_outline
632056222..2056404PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_02269; phage(gi100011)7.37e-37Showinfo_outline
642056377..2056568PHAGE_Escher_PA28_NC_041935: exonuclease A; NCTC9056_02270; phage(gi100018)7.36e-39Showinfo_outline
652056645..2056860PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9056_02271; phage(gi100017)1.65e-47Showinfo_outline
662056959..2057180PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9056_02272; phage(gi100016)3.90e-46Showinfo_outline
672057177..2057728PHAGE_Entero_HK140_NC_019710: hypothetical protein; NCTC9056_02273; phage(gi428781974)4.63e-76Showinfo_outline
682057931..2058212PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_02274; phage(gi100007)1.05e-63Showinfo_outline
692058491..2058506attR0.0Showinfo_outline
702058526..2058726PHAGE_Entero_HK633_NC_019719: hypothetical protein; NCTC9056_02275; phage(gi428782548)5.50e-44Showinfo_outline
71complement(2058910..2059845)PHAGE_Burkho_phi1026b_NC_005284: gp58; NCTC9056_02276; phage(gi38707948)2.41e-16Showinfo_outline

Region 5, total 17 CDS

#CDS PositionBLAST HitE-ValueSequence
12340559..2340577attL0.0Showinfo_outline
22340758..2342185PHAGE_Stx2_c_86_NC_008464: integrase; NCTC9056_02540; phage(gi116222028)2.70e-09Showinfo_outline
32342172..2342858Uncharacterised protein; NCTC9056_025410.0Showinfo_outline
42343000..2343188PHAGE_Mycoba_Gaia_NC_026590: excise; NCTC9056_02542; phage(gi764160133)2.12e-05Showinfo_outline
5complement(2343531..2343836)Uncharacterised protein; NCTC9056_025430.0Showinfo_outline
62344034..2344237putative prophage protein; NCTC9056_025440.0Showinfo_outline
72344230..2344550Uncharacterised protein; NCTC9056_025450.0Showinfo_outline
82344557..2344856putative prophage protein; NCTC9056_025460.0Showinfo_outline
92344853..2346670PHAGE_Entero_P4_NC_001609: DNA primase; NCTC9056_02547; phage(gi9627512)7.08e-158Showinfo_outline
102346958..2347203putative prophage protein; NCTC9056_025480.0Showinfo_outline
112347200..2347622PHAGE_Staphy_tp310_1_NC_009761: ss-DNA-binding protein; NCTC9056_02549; phage(gi156603906)2.25e-11Showinfo_outline
122347896..2348936PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major capsid protein; Lambda gpE homolog; NCTC9056_02550; phage(gi169257230)5.74e-82Showinfo_outline
132348946..2349287PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head decoration protein; Lambda gpD homolog; NCTC9056_02551; phage(gi169257231)3.43e-12Showinfo_outline
142349297..2349641PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC9056_02552; phage(gi9627517)2.24e-06Showinfo_outline
152349843..2350385PHAGE_Entero_N15_NC_001901: gp1; NCTC9056_02553; phage(gi9630465)1.07e-48Showinfo_outline
162350459..2350740putative prophage protein; NCTC9056_025540.0Showinfo_outline
172351602..2351620attR0.0Showinfo_outline

Region 6, total 8 CDS

#CDS PositionBLAST HitE-ValueSequence
12366535..2366780PHAGE_Mycoba_Adler_NC_023591: glutaredoxin-like protein NrdH; NCTC9056_02572; phage(gi589892251)2.67e-16Showinfo_outline
22366777..2367187PHAGE_Bacill_Mgbh1_NC_041879: ribonucleotide reductase A subunit; NCTC9056_02573; phage(gi100062)2.60e-23Showinfo_outline
32367160..2369304PHAGE_Entero_phiEF24C_NC_009904: putative ribonucleotide reductase; NCTC9056_02574; phage(gi158079505)0.0Showinfo_outline
42369314..2370273PHAGE_Mycoba_Bongo_NC_041970: baseplate wedge subunit; NCTC9056_02575; phage(gi100108)8.29e-172Showinfo_outline
52370524..2370799PHAGE_Entero_P1_NC_005856: InsA; NCTC9056_02576; phage(gi46401643)4.76e-62Showinfo_outline
62370844..2371221PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC9056_02577; phage(gi557307573)5.38e-88Showinfo_outline
72371405..2372607PHAGE_Bacill_G_NC_023719: gp245; NCTC9056_02578; phage(gi593777701)7.41e-35Showinfo_outline
82372600..2373664PHAGE_Bacill_G_NC_023719: gp243; NCTC9056_02579; phage(gi593777699)8.15e-08Showinfo_outline

Region 7, total 73 CDS

#CDS PositionBLAST HitE-ValueSequence
14251388..4251834PHAGE_Pseudo_vB_PaeS_PAO1_Ab18_NC_026594: hypothetical protein; NCTC9056_04435; phage(gi764160510)3.71e-05Showinfo_outline
24251849..4252526PHAGE_Strept_VWB_NC_005345: hypothetical protein; NCTC9056_04436; phage(gi41057269)1.71e-06Showinfo_outline
34252668..4252681attL0.0Showinfo_outline
44252912..4254147PHAGE_Entero_cdtI_NC_009514: Phage integrase; NCTC9056_04437; phage(gi148609414)0.0Showinfo_outline
54254306..4255439Uncharacterised protein; NCTC9056_044380.0Showinfo_outline
6complement(4255843..4256463)PHAGE_Entero_cdtI_NC_009514: Valyl-tRNA synthetase; NCTC9056_04439; phage(gi148609417)5.11e-141Showinfo_outline
7complement(4256465..4256794)PHAGE_Shigel_Ss_VASD_NC_028685: hypothetical protein; NCTC9056_04440; phage(gi966200435)8.26e-28Showinfo_outline
8complement(4256791..4257030)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_04441; phage(gi428782346)1.84e-49Showinfo_outline
9complement(4257023..4257226)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_04442; phage(gi428782347)1.19e-41Showinfo_outline
10complement(4257223..4257585)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_04443; phage(gi428782348)1.37e-84Showinfo_outline
11complement(4257576..4258112)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_04444; phage(gi428782349)1.48e-131Showinfo_outline
12complement(4258241..4259065)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_04445; phage(gi428782350)0.0Showinfo_outline
13complement(4259131..4259493)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_04446; phage(gi428782351)2.40e-83Showinfo_outline
14complement(4260196..4260843)PHAGE_Entero_mEp460_NC_019716: prophage repressor; NCTC9056_04447; phage(gi428782354)7.54e-156Showinfo_outline
154260986..4261246PHAGE_Entero_mEp460_NC_019716: putative antirepressor Cro; NCTC9056_04448; phage(gi428782355)2.57e-57Showinfo_outline
164261239..4261790PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_04449; phage(gi428782356)1.00e-131Showinfo_outline
174262932..4263156PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_04452; phage(gi428782358)1.55e-50Showinfo_outline
184263153..4263971PHAGE_Entero_mEp460_NC_019716: replication protein; NCTC9056_04453; phage(gi428782359)0.0Showinfo_outline
194263974..4264462PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_04454; phage(gi428782360)1.41e-113Showinfo_outline
204264462..4265115PHAGE_Entero_mEp460_NC_019716: DNA N-6-adenine-methyltransferase; NCTC9056_04455; phage(gi428782361)7.99e-159Showinfo_outline
214265112..4265438PHAGE_Entero_mEp460_NC_019716: LexA DNA binding domain protein; NCTC9056_04456; phage(gi428782362)1.07e-74Showinfo_outline
224265435..4265824PHAGE_Entero_mEp460_NC_019716: holliday junction resolvase; NCTC9056_04457; phage(gi428782363)5.16e-90Showinfo_outline
234265844..4266641PHAGE_Entero_mEp460_NC_019716: KilA-N domain protein; NCTC9056_04458; phage(gi428782364)1.30e-172Showinfo_outline
244266649..4267638PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_04459; phage(gi428782365)0.0Showinfo_outline
254267656..4267997PHAGE_Shigel_SfII_NC_021857: antiterminator protein Q; NCTC9056_04460; phage(gi526244682)1.53e-57Showinfo_outline
26complement(4268493..4268870)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC9056_04461; phage(gi557307573)5.38e-88Showinfo_outline
27complement(4268915..4269190)PHAGE_Entero_P1_NC_005856: InsA; NCTC9056_04462; phage(gi46401643)4.76e-62Showinfo_outline
28complement(4269219..4269335)Uncharacterised protein; NCTC9056_044630.0Showinfo_outline
29complement(4269322..4270248)Uncharacterised protein; NCTC9056_044640.0Showinfo_outline
304270514..4270717PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_04465; phage(gi428782368)2.07e-44Showinfo_outline
314270868..4271920PHAGE_Entero_mEp460_NC_019716: DNA methylase; NCTC9056_04466; phage(gi428782369)0.0Showinfo_outline
324271988..4272164PHAGE_Entero_mEp460_NC_019716: porin; NCTC9056_04467; phage(gi428782370)1.02e-31Showinfo_outline
334272240..4272605PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; NCTC9056_04468; phage(gi17546153)5.82e-59Showinfo_outline
344272563..4273468PROPHAGE_Escher_MG1655: IS2 transposase TnpB; NCTC9056_04469; phage(gi16132094)0.0Showinfo_outline
354273539..4274036PHAGE_Entero_SfI_NC_027339: lysozyme; NCTC9056_04470; phage(gi849250312)1.04e-117Showinfo_outline
364274033..4274476PHAGE_Entero_SfI_NC_027339: Rz protein; NCTC9056_04471; phage(gi849250282)1.52e-88Showinfo_outline
374274501..4274725Uncharacterised protein; NCTC9056_044720.0Showinfo_outline
384274765..4274980PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC9056_04473; phage(gi435439326)3.98e-23Showinfo_outline
394275297..4275842PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC9056_04474; phage(gi100035)3.88e-129Showinfo_outline
404275817..4277742PHAGE_Entero_DE3_NC_042057: DNA polymerase; NCTC9056_04475; phage(gi100036)0.0Showinfo_outline
414277739..4277945PHAGE_Entero_lambda_NC_001416: head-tail joining protein; NCTC9056_04476; phage(gi9626246)2.25e-42Showinfo_outline
424277942..4279543PHAGE_Entero_lambda_NC_001416: capsid component; NCTC9056_04477; phage(gi9626247)0.0Showinfo_outline
434279524..4280843PHAGE_Entero_lambda_NC_001416: capsid component; NCTC9056_04478; phage(gi9626248)0.0Showinfo_outline
444280853..4281185PHAGE_Entero_lambda_NC_001416: head-DNA stabilization protein; NCTC9056_04479; phage(gi9626250)7.06e-73Showinfo_outline
454281241..4282266PHAGE_Entero_lambda_NC_001416: capsid component; NCTC9056_04480; phage(gi9626251)0.0Showinfo_outline
464282308..4282703PHAGE_Entero_DE3_NC_042057: sliding clamp DNA polymerase; NCTC9056_04481; phage(gi100042)1.35e-75Showinfo_outline
474282715..4283068PHAGE_Entero_lambda_NC_001416: head-tail joining protein; NCTC9056_04482; phage(gi9626253)2.11e-79Showinfo_outline
484283080..4283658PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_04483; phage(gi9626254)3.06e-132Showinfo_outline
494283655..4284050PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_04484; phage(gi9626255)1.05e-88Showinfo_outline
504284058..4284798PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_04485; phage(gi9626256)1.74e-171Showinfo_outline
514284814..4285236PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_04486; phage(gi9626257)3.97e-95Showinfo_outline
524285218..4285652PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_04487; phage(gi9626258)1.06e-101Showinfo_outline
534285645..4288224PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_04488; phage(gi9626259)0.0Showinfo_outline
544288221..4288550PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_04489; phage(gi9626260)5.12e-76Showinfo_outline
55complement(4288614..4290185)PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9056_04490; phage(gi209447153)0.0Showinfo_outline
56complement(4290205..4290552)PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9056_04491; phage(gi209447152)4.31e-57Showinfo_outline
57complement(4290552..4291202)PHAGE_Stx2_c_1717_NC_011357: truncated transposase; NCTC9056_04492; phage(gi209447151)2.05e-19Showinfo_outline
584291322..4291960PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_04493; phage(gi9626261)1.72e-157Showinfo_outline
594291966..4292709PHAGE_Entero_mEp460_NC_019716: tail fiber component; NCTC9056_04494; phage(gi428782332)1.14e-179Showinfo_outline
604292706..4293278PHAGE_Entero_mEp460_NC_019716: tail assembly protein; NCTC9056_04495; phage(gi428782333)2.55e-93Showinfo_outline
614293338..4296733PHAGE_Entero_mEp460_NC_019716: host specificity protein; NCTC9056_04496; phage(gi428782334)0.0Showinfo_outline
624296801..4297400PHAGE_Entero_mEp460_NC_019716: Lom protein; NCTC9056_04497; phage(gi428782335)2.11e-138Showinfo_outline
634297465..4299843PHAGE_Entero_JenP1_NC_029028: tail fiber protein; NCTC9056_04498; phage(gi971767090)0.0Showinfo_outline
644299843..4300124PHAGE_Entero_JenP1_NC_029028: hypothetical protein; NCTC9056_04499; phage(gi971767091)2.53e-20Showinfo_outline
654300134..4300838PHAGE_Bacill_Grass_NC_022771: minor capsid protein; NCTC9056_04500; phage(gi568191676)7.76e-06Showinfo_outline
664300849..4301136PHAGE_Halomo_phiHAP_1_NC_010342: hypothetical protein; NCTC9056_04501; phage(gi167832364)5.34e-07Showinfo_outline
67complement(4301244..4302614)PHAGE_Bordet_BPP_1_NC_005357: reverse transcriptase; NCTC9056_04502; phage(gi41179367)1.60e-12Showinfo_outline
68complement(4302601..4303143)Uncharacterised protein; NCTC9056_045030.0Showinfo_outline
694303271..4303438Uncharacterised protein; NCTC9056_045040.0Showinfo_outline
70complement(4303367..4303615)PHAGE_Entero_mEp460_NC_019716: DinI-like protein; NCTC9056_04505; phage(gi428782337)2.34e-51Showinfo_outline
714304070..4304567Uncharacterised protein; NCTC9056_045060.0Showinfo_outline
72complement(4305116..4305364)PHAGE_Entero_mEp460_NC_019716: DinI-like protein; NCTC9056_04507; phage(gi428782337)7.41e-53Showinfo_outline
734305632..4305645attR0.0Showinfo_outline

Region 8, total 19 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(4691010..4692335)PHAGE_Entero_P4_NC_001609: integrase; NCTC9056_04866; phage(gi9627511)3.11e-17Showinfo_outline
24692527..4692539attL0.0Showinfo_outline
34692710..4693879PROPHAGE_Escher_CFT073: putative prophage integrase; NCTC9056_04867; phage(gi26250313)7.61e-179Showinfo_outline
44693881..4695584SMC domain-containing protein; NCTC9056_048680.0Showinfo_outline
54695581..4695940PHAGE_Bdello_phi1422_NC_019525: putative helicase; NCTC9056_04869; phage(gi422936833)8.14e-05Showinfo_outline
64695986..4696966PROPHAGE_Escher_MG1655: IS5 transposase and trans-activator; NCTC9056_04870; phage(gi16129935)0.0Showinfo_outline
74697248..4698402PHAGE_Pseudo_PaMx25_NC_041953: hypothetical protein; NCTC9056_04871; phage(gi100073)7.71e-11Showinfo_outline
8complement(4698606..4699178)PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC9056_04872; phage(gi9627520)3.50e-127Showinfo_outline
9complement(4699193..4699438)PHAGE_Erwini_ENT90_NC_019932: transcriptional regulator; NCTC9056_04873; phage(gi431810990)1.75e-16Showinfo_outline
10complement(4699435..4699647)PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC9056_04874; phage(gi9627518)2.16e-43Showinfo_outline
11complement(4699762..4700508)PROPHAGE_Escher_CFT073: transposase/IS protein; NCTC9056_04875; phage(gi26248359)1.91e-26Showinfo_outline
12complement(4700523..4702064)PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; NCTC9056_04876; phage(gi557307612)4.85e-11Showinfo_outline
13complement(4702243..4702755)PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC9056_04877; phage(gi9627518)8.10e-118Showinfo_outline
144703308..4703574PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC9056_04878; phage(gi9627517)1.12e-59Showinfo_outline
154704154..4704441PHAGE_Entero_P4_NC_001609: helper derepression protein; NCTC9056_04881; phage(gi9627515)6.92e-65Showinfo_outline
164704434..4704889PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC9056_04882; phage(gi9627514)1.85e-104Showinfo_outline
174705025..4705345PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC9056_04883; phage(gi9627513)1.19e-71Showinfo_outline
184705360..4707693PHAGE_Entero_P4_NC_001609: DNA primase; NCTC9056_04884; phage(gi9627512)0.0Showinfo_outline
194708157..4708169attR0.0Showinfo_outline

Region 9, total 63 CDS

#CDS PositionBLAST HitE-ValueSequence
14977031..4977681PHAGE_Stx2_c_1717_NC_011357: truncated transposase; NCTC9056_05134; phage(gi209447151)3.36e-19Showinfo_outline
24977681..4978028PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9056_05135; phage(gi209447152)4.31e-57Showinfo_outline
34978048..4979619PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9056_05136; phage(gi209447153)0.0Showinfo_outline
44979136..4979150attL0.0Showinfo_outline
54979789..4979865tRNA0.0Showinfo_outline
6complement(4979881..4981044)PHAGE_Shigel_Stx_NC_029120: integrase; NCTC9056_05138; phage(gi985761248)0.0Showinfo_outline
7complement(4981271..4981576)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_05139; phage(gi428782343)1.08e-24Showinfo_outline
8complement(4981576..4981938)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_05140; phage(gi428782348)4.67e-82Showinfo_outline
94982039..4982314PHAGE_Entero_P1_NC_005856: InsA; NCTC9056_05141; phage(gi46401643)4.76e-62Showinfo_outline
104982359..4982736PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC9056_05142; phage(gi557307573)5.38e-88Showinfo_outline
11complement(4982730..4983242)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_05143; phage(gi428782349)2.04e-117Showinfo_outline
12complement(4983370..4984194)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_05144; phage(gi428782350)0.0Showinfo_outline
13complement(4984253..4984630)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC9056_05145; phage(gi557307573)5.38e-88Showinfo_outline
14complement(4984675..4984950)PHAGE_Entero_P1_NC_005856: InsA; NCTC9056_05146; phage(gi46401643)4.76e-62Showinfo_outline
15complement(4985037..4985399)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_05147; phage(gi428782351)3.40e-82Showinfo_outline
164985870..4986385PHAGE_Salmon_HK620_NC_002730: hypothetical protein; NCTC9056_05148; phage(gi13559839)1.42e-15Showinfo_outline
17complement(4986770..4987846)PHAGE_Salmon_ST160_NC_014900: regulatory protein; NCTC9056_05149; phage(gi318065923)6.22e-157Showinfo_outline
18complement(4988017..4988481)PHAGE_Entero_mEp460_NC_019716: prophage repressor; NCTC9056_05150; phage(gi428782354)1.17e-39Showinfo_outline
194988828..4989091PHAGE_Phage_Gifsy_2_NC_010393: putative bacteriophage regulatory protein; Lambda gpCro analog; NCTC9056_05151; phage(gi169257277)1.80e-15Showinfo_outline
204989045..4989677PHAGE_Entero_mEp460_NC_019716: hypothetical protein; e14; phage prophage; NCTC9056_05152(gi428782356)7.86e-120Showinfo_outline
214989674..4990012PHAGE_Shigel_SfII_NC_021857: hypothetical protein; NCTC9056_05153; phage(gi526244674)2.54e-77Showinfo_outline
224990022..4990963PHAGE_Shigel_SfIV_NC_022749: replication protein; NCTC9056_05154; phage(gi557307567)0.0Showinfo_outline
234990966..4991454PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_05155; phage(gi428782360)1.21e-110Showinfo_outline
244991454..4991780PHAGE_Entero_mEp460_NC_019716: LexA DNA binding domain protein; NCTC9056_05156; phage(gi428782362)3.86e-72Showinfo_outline
254991777..4992166PHAGE_Entero_mEp460_NC_019716: holliday junction resolvase; NCTC9056_05157; phage(gi428782363)1.89e-90Showinfo_outline
264992186..4993028PHAGE_Entero_mEp460_NC_019716: KilA-N domain protein; NCTC9056_05158; phage(gi428782364)0.0Showinfo_outline
274993036..4994025PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_05159; phage(gi428782365)0.0Showinfo_outline
284994039..4994791PHAGE_Entero_mEp460_NC_019716: late gene regulator; NCTC9056_05160; phage(gi428782366)0.0Showinfo_outline
294994946..4995476Uncharacterised protein; NCTC9056_051610.0Showinfo_outline
304995658..4995852PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_05162; phage(gi428782368)3.43e-10Showinfo_outline
314996002..4996826PHAGE_Entero_mEp460_NC_019716: DNA methylase; NCTC9056_05163; phage(gi428782369)0.0Showinfo_outline
324996855..4997130PHAGE_Entero_P1_NC_005856: InsA; NCTC9056_05164; phage(gi46401643)4.76e-62Showinfo_outline
334997175..4997552PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC9056_05165; phage(gi557307573)5.38e-88Showinfo_outline
344997571..4997804PHAGE_Entero_mEp460_NC_019716: DNA methylase; NCTC9056_05166; phage(gi428782369)2.22e-49Showinfo_outline
354998889..4999149PHAGE_Entero_mEp460_NC_019716: porin; NCTC9056_05168; phage(gi428782370)9.24e-38Showinfo_outline
364999154..4999498PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9056_05169; phage(gi428782371)5.11e-49Showinfo_outline
37complement(4999464..4999736)ybl58; NCTC9056_051700.0Showinfo_outline
384999842..5000375PHAGE_Entero_mEp460_NC_019716: endolysin; Qin; phage prophage; NCTC9056_05171(gi428782372)1.10e-123Showinfo_outline
395000372..5000833PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_05172; phage(gi100031)9.17e-105Showinfo_outline
40complement(5000865..5001158)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9056_05173; phage(gi100032)5.54e-55Showinfo_outline
415001639..5001965truncated TonB-like membrane protein encoded within prophage; NCTC9056_051740.0Showinfo_outline
42complement(5002088..5002441)Uncharacterised protein; NCTC9056_051750.0Showinfo_outline
43complement(5002915..5004486)PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9056_05176; phage(gi209447153)0.0Showinfo_outline
44complement(5004506..5004853)PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9056_05177; phage(gi209447152)4.31e-57Showinfo_outline
45complement(5004853..5005500)PHAGE_Stx2_c_1717_NC_011357: truncated transposase; NCTC9056_05178; phage(gi209447151)2.12e-23Showinfo_outline
465005626..5006171PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC9056_05179; phage(gi100035)3.88e-129Showinfo_outline
475006146..5008071PHAGE_Entero_DE3_NC_042057: DNA polymerase; NCTC9056_05180; phage(gi100036)0.0Showinfo_outline
485008068..5008274PHAGE_Entero_lambda_NC_001416: head-tail joining protein; NCTC9056_05181; phage(gi9626246)2.25e-42Showinfo_outline
495008271..5009872PHAGE_Entero_lambda_NC_001416: capsid component; NCTC9056_05182; phage(gi9626247)0.0Showinfo_outline
505009853..5011172PHAGE_Entero_lambda_NC_001416: capsid component; NCTC9056_05183; phage(gi9626248)0.0Showinfo_outline
515011182..5011514PHAGE_Entero_lambda_NC_001416: head-DNA stabilization protein; NCTC9056_05184; phage(gi9626250)7.06e-73Showinfo_outline
525011570..5012595PHAGE_Entero_lambda_NC_001416: capsid component; NCTC9056_05185; phage(gi9626251)0.0Showinfo_outline
535012637..5013032PHAGE_Entero_DE3_NC_042057: sliding clamp DNA polymerase; NCTC9056_05186; phage(gi100042)1.35e-75Showinfo_outline
545013044..5013397PHAGE_Entero_lambda_NC_001416: head-tail joining protein; NCTC9056_05187; phage(gi9626253)2.11e-79Showinfo_outline
555013409..5013987PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_05188; phage(gi9626254)3.06e-132Showinfo_outline
565013984..5014379PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_05189; phage(gi9626255)1.05e-88Showinfo_outline
575014387..5014689PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_05190; phage(gi9626256)6.61e-67Showinfo_outline
585014742..5015128PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_05191; phage(gi9626256)2.82e-75Showinfo_outline
595015144..5015566PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_05192; phage(gi9626257)3.97e-95Showinfo_outline
605015206..5015220attR0.0Showinfo_outline
615015548..5015982PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_05193; phage(gi9626258)1.06e-101Showinfo_outline
625016040..5016459PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_05194; phage(gi9626259)9.75e-63Showinfo_outline
635016545..5016832PHAGE_Entero_lambda_NC_001416: tail component; NCTC9056_05195; phage(gi9626259)1.09e-47Showinfo_outline
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5017225 bps
Phages: 9
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

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