Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGAU01000003.1

GenInfo (GI) Number: 0000000000

Download Results: UGAU01000003.1.PHASTER.zip

gi|00000000|ref|UGAU01000003.1| Escherichia coli strain NCTC11111 genome assembly, contig: 4980200, gc%: 50.41%

Download summary as .txt file: summary.txt file_download

Total: 9 prophage regions have been identified, of which 2 regions are intact, 4 regions are incomplete, and 3 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
135.2Kbincomplete602888733-123974 info_outlinePHAGE_Bacter_APSE_2_NC_011551(3)48.64%Show info_outline
217.7Kbquestionable85101230637-1248421 info_outlinePHAGE_Entero_P4_NC_001609(8)48.25%Show info_outline
327Kbintact130382051103-2078201 info_outlinePHAGE_Entero_P88_NC_026014(21)49.16%Show info_outline
429.1Kbintact100342820551-2849701 info_outlinePHAGE_Klebsi_phiKO2_NC_005857(8)46.62%Show info_outline
510.7Kbincomplete50123063113-3073891 info_outlinePHAGE_Salmon_118970_sal3_NC_031940(4)47.60%Show info_outline
611.2Kbquestionable90213225149-3236383 info_outlinePHAGE_Mannhe_vB_MhM_3927AP2_NC_028766(4)50.21%Show info_outline
720.3Kbincomplete30173520870-3541215 info_outlinePHAGE_Entero_DE3_NC_042057(7)46.69%Show info_outline
814.6Kbincomplete20173896733-3911420 info_outlinePHAGE_Entero_BP_4795_NC_004813(8)42.56%Show info_outline
928.6Kbquestionable90224216837-4245525 info_outlinePHAGE_Entero_mEp460_NC_019716(9)47.15%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGAU01000003.1| Escherichia coli strain NCTC11111 genome assembly, contig: 4980200, gc%: 50.41%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 30 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(88733..90841)PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007: hypothetical protein; NCTC11111_00211; phage(gi564292599)1.54e-19Showinfo_outline
2complement(90860..91135)RNA polymerase omega subunit; NCTC11111_002120.0Showinfo_outline
3complement(91190..91813)PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007: hypothetical protein; NCTC11111_00213; phage(gi564292623)4.00e-18Showinfo_outline
491782..91796attL0.0Showinfo_outline
592071..93753PHAGE_Vibrio_pTD1_NC_041916: hypothetical protein; NCTC11111_00214; phage(gi100038)3.98e-24Showinfo_outline
6complement(93750..94367)inner membrane protein; NCTC11111_002150.0Showinfo_outline
7complement(94658..94891)PHAGE_Riemer_RAP44_NC_019490: DNA-damage-inducible protein D; NCTC11111_00216; phage(gi418489887)7.40e-14Showinfo_outline
8complement(94955..96085)PHAGE_Geobac_E3_NC_029073: transposase; NCTC11111_00217; phage(gi985758480)7.19e-79Showinfo_outline
9complement(96235..96660)PHAGE_Gordon_Attis_NC_041883: RNA polymerase binding protein; NCTC11111_00218; phage(gi100043)1.86e-11Showinfo_outline
1096818..97009Uncharacterised protein; NCTC11111_002190.0Showinfo_outline
1197191..98204PHAGE_Clostr_c_st_NC_007581: hypothetical protein; NCTC11111_00220; phage(gi80159838)3.80e-13Showinfo_outline
1298213..98674PHAGE_Gordon_Bantam_NC_031074: hypothetical protein; NCTC11111_00221; phage(gi100132)1.59e-08Showinfo_outline
13complement(98977..99087)Uncharacterised protein; NCTC11111_002220.0Showinfo_outline
14complement(99087..99374)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC11111_00223; phage(gi19549027)5.40e-05Showinfo_outline
15complement(99606..99797)putative prophage protein; NCTC11111_002240.0Showinfo_outline
16100050..100235PHAGE_Stenot_S1_NC_011589: putative repressor protein; NCTC11111_00225; phage(gi213163928)7.16e-09Showinfo_outline
17complement(100814..102040)PHAGE_Bacter_APSE_2_NC_011551: injection gp20; NCTC11111_00226; phage(gi212499730)2.14e-130Showinfo_outline
18complement(102040..102717)PHAGE_Bacter_APSE_2_NC_011551: injection gp7; NCTC11111_00227; phage(gi212499729)1.80e-64Showinfo_outline
19complement(102711..103172)PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein; NCTC11111_00228; phage(gi212499728)4.93e-31Showinfo_outline
20complement(104209..104391)putative prophage protein; NCTC11111_002310.0Showinfo_outline
21complement(104384..105217)PHAGE_Escher_TL_2011c_NC_019442: putative antirepressor; NCTC11111_00232; phage(gi418487055)2.42e-28Showinfo_outline
22complement(105230..105661)putative prophage protein; NCTC11111_002330.0Showinfo_outline
23complement(105661..105864)putative prophage regulatory protein; NCTC11111_002340.0Showinfo_outline
24complement(105977..106822)putative prophage protein; NCTC11111_002350.0Showinfo_outline
25complement(106918..108177)PHAGE_Burkho_BcepC6B_NC_005887: putative integrase protein; NCTC11111_00236; phage(gi48697215)1.14e-51Showinfo_outline
26complement(108366..109229)putative alpha helix protein; NCTC11111_002370.0Showinfo_outline
27109356..110072ribonuclease PH; NCTC11111_002380.0Showinfo_outline
28110138..110779PHAGE_Prochl_P_SSM2_NC_006883: orotate phosphoribosyltransferase; NCTC11111_00239; phage(gi61805915)4.19e-05Showinfo_outline
29111077..112036PHAGE_Escher_pro147_NC_028896: RNA-directed DNA polymerase; NCTC11111_00240; phage(gi971753749)5.60e-18Showinfo_outline
30123974..123988attR0.0Showinfo_outline

Region 2, total 12 CDS

#CDS PositionBLAST HitE-ValueSequence
11230637..1230650attL0.0Showinfo_outline
21233038..1237075PHAGE_Gordon_Eyre_NC_031122: hypothetical protein; NCTC11111_01360; phage(gi100057)4.51e-06Showinfo_outline
3complement(1237746..1239389)PHAGE_Entero_P4_NC_001609: DNA primase; NCTC11111_01361; phage(gi9627512)0.0Showinfo_outline
4complement(1239443..1239703)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC11111_01362; phage(gi9627514)2.10e-56Showinfo_outline
5complement(1239696..1239983)PHAGE_Entero_P4_NC_001609: helper derepression protein; NCTC11111_01363; phage(gi9627515)6.92e-65Showinfo_outline
6complement(1240572..1240838)PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC11111_01366; phage(gi9627517)1.12e-59Showinfo_outline
71241390..1242124PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC11111_01367; phage(gi9627518)1.83e-177Showinfo_outline
81242121..1242621PHAGE_Entero_P4_NC_001609: transactivation protein; NCTC11111_01368; phage(gi9627519)5.23e-118Showinfo_outline
91242695..1243267PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC11111_01369; phage(gi9627520)3.05e-136Showinfo_outline
10complement(1243466..1245103)Uncharacterised protein; NCTC11111_013700.0Showinfo_outline
11complement(1245100..1246305)PHAGE_Entero_P4_NC_001609: integrase; NCTC11111_01371; phage(gi9627511)4.39e-78Showinfo_outline
121248421..1248434attR0.0Showinfo_outline

Region 3, total 43 CDS

#CDS PositionBLAST HitE-ValueSequence
12051103..2052935PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007: hypothetical protein; NCTC11111_02125; phage(gi564292625)3.02e-06Showinfo_outline
22052992..2053540CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; NCTC11111_021260.0Showinfo_outline
32053692..2053767tRNA0.0Showinfo_outline
42053822..2053895tRNA0.0Showinfo_outline
52053908..2053994tRNA0.0Showinfo_outline
62053940..2053981attL0.0Showinfo_outline
7complement(2055005..2055145)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC11111_02130; phage(gi744692752)1.58e-26Showinfo_outline
8complement(2055335..2055595)PHAGE_Yersin_L_413C_NC_004745: Ogr; NCTC11111_02131; phage(gi30065732)9.50e-09Showinfo_outline
9complement(2055638..2056747)PHAGE_Entero_P88_NC_026014: gene D protein; NCTC11111_02132; phage(gi744692751)0.0Showinfo_outline
102056905..2058089PHAGE_Entero_P88_NC_026014: tail sheath monomer; NCTC11111_02133; phage(gi744692749)0.0Showinfo_outline
112058089..2058601PHAGE_Entero_P88_NC_026014: major tail tube protein; NCTC11111_02134; phage(gi744692748)8.40e-121Showinfo_outline
122058656..2059021PHAGE_Entero_P88_NC_026014: tail protein; NCTC11111_02135; phage(gi744692747)2.36e-78Showinfo_outline
132059172..2059906PHAGE_Entero_P88_NC_026014: tail tape measure protein; NCTC11111_02136; phage(gi744692745)1.25e-148Showinfo_outline
142059849..2060331PHAGE_Entero_P88_NC_026014: tail tape measure protein; NCTC11111_02137; phage(gi744692745)1.07e-40Showinfo_outline
152060405..2060938PHAGE_Entero_P88_NC_026014: tail fiber assembly protein; NCTC11111_02138; phage(gi744692741)4.44e-127Showinfo_outline
16complement(2060966..2061493)PHAGE_Entero_P88_NC_026014: tail fiber assembly protein; NCTC11111_02139; phage(gi744692740)5.27e-113Showinfo_outline
17complement(2061495..2062664)PHAGE_Salmon_ST64B_NC_004313: tail protein; NCTC11111_02140; phage(gi23505468)1.87e-91Showinfo_outline
18complement(2062667..2063035)PHAGE_Entero_P88_NC_026014: major capsid protein; NCTC11111_02141; phage(gi744692726)1.83e-74Showinfo_outline
19complement(2063023..2063211)conjugal transfer pilus assembly protein TraU; NCTC11111_021420.0Showinfo_outline
20complement(2063208..2063840)conjugal transfer protein TraW; NCTC11111_021430.0Showinfo_outline
212064044..2065462PHAGE_Entero_P88_NC_026014: terminase ATPase subunit; NCTC11111_02144; phage(gi744692724)0.0Showinfo_outline
222065459..2065701PHAGE_Entero_P88_NC_026014: PBSX family portal protein; NCTC11111_02145; phage(gi744692723)3.47e-50Showinfo_outline
232066555..2067919putative KAP-NTPase protein; NCTC11111_021460.0Showinfo_outline
24complement(2068140..2069585)PHAGE_Entero_P88_NC_026014: replication protein; NCTC11111_02147; phage(gi744692716)0.0Showinfo_outline
25complement(2069605..2070627)PHAGE_Entero_P88_NC_026014: replication protein; NCTC11111_02148; phage(gi744692716)0.0Showinfo_outline
26complement(2070911..2071276)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC11111_02149; phage(gi744692715)2.29e-82Showinfo_outline
27complement(2071349..2071579)PHAGE_Entero_P88_NC_026014: derepression protein; NCTC11111_02150; phage(gi744692714)2.61e-44Showinfo_outline
28complement(2071902..2072201)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC11111_02153; phage(gi744692710)4.45e-58Showinfo_outline
29complement(2072198..2072464)PHAGE_Entero_P88_NC_026014: MarR family transcriptional regulator; NCTC11111_02154; phage(gi744692709)1.74e-41Showinfo_outline
30complement(2072461..2072664)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC11111_02155; phage(gi744692708)2.04e-35Showinfo_outline
31complement(2072688..2073104)Prophage protein; NCTC11111_021560.0Showinfo_outline
32complement(2073197..2073310)PHAGE_Entero_P88_NC_026014: membrane protein; NCTC11111_02157; phage(gi744692707)9.77e-17Showinfo_outline
33complement(2073307..2073549)PHAGE_Entero_P88_NC_026014: DNA modification methyltransferase; NCTC11111_02158; phage(gi744692706)2.95e-51Showinfo_outline
34complement(2073561..2073839)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC11111_02159; phage(gi744692705)1.94e-49Showinfo_outline
35complement(2073850..2074200)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC11111_02160; phage(gi744692704)1.17e-67Showinfo_outline
36complement(2074222..2074425)PHAGE_Haemop_HP2_NC_003315: orf2(S)cox; NCTC11111_02161; phage(gi17981819)1.54e-11Showinfo_outline
372074497..2074634Uncharacterised protein; NCTC11111_021620.0Showinfo_outline
382074724..2075128PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC11111_02163; phage(gi198449275)5.51e-21Showinfo_outline
392075144..2075794putative transmembrane protein; NCTC11111_021640.0Showinfo_outline
402075824..2076171PHAGE_Salmon_SEN1_NC_029003: hypothetical protein; NCTC11111_02165; phage(gi971764937)7.90e-05Showinfo_outline
412076304..2077179PHAGE_Haemop_HP2_NC_003315: integrase; NCTC11111_02166; phage(gi17981816)3.29e-126Showinfo_outline
422077286..2077327attR0.0Showinfo_outline
432077536..2078201PHAGE_Sphing_PAU_NC_019521: gp60; NCTC11111_02167; phage(gi435844563)9.49e-07Showinfo_outline

Region 4, total 36 CDS

#CDS PositionBLAST HitE-ValueSequence
12820551..2820565attL0.0Showinfo_outline
2complement(2825599..2825979)PHAGE_Pseudo_Lu11_NC_017972: putative tail assembly protein; NCTC11111_02890; phage(gi388684690)9.00e-20Showinfo_outline
3complement(2826700..2828757)PHAGE_Stx2_c_86_NC_008464: hypothetical protein; NCTC11111_02891; phage(gi116221995)0.0Showinfo_outline
4complement(2828767..2829000)Uncharacterised protein; NCTC11111_028920.0Showinfo_outline
5complement(2828982..2829296)PHAGE_Salmon_GG32_NC_031045: hypothetical protein; NCTC11111_02893; phage(gi100012)2.06e-06Showinfo_outline
6complement(2829311..2829739)PHAGE_Escher_Av_05_NC_025830: tail fiber protein; NCTC11111_02894; phage(gi730985066)5.12e-09Showinfo_outline
7complement(2829736..2829960)PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tip assembly protein; Lambda gpL homolog; NCTC11111_02895; phage(gi169257314)2.64e-23Showinfo_outline
8complement(2830096..2830887)PHAGE_Klebsi_phiKO2_NC_005857: major capsid head protein precursor; NCTC11111_02896; phage(gi46402092)3.41e-152Showinfo_outline
9complement(2830963..2831907)PHAGE_Klebsi_phiKO2_NC_005857: putative head maturation protease; NCTC11111_02897; phage(gi46402091)0.0Showinfo_outline
10complement(2831920..2833179)PHAGE_Klebsi_phiKO2_NC_005857: putative portal protein; NCTC11111_02898; phage(gi46402090)0.0Showinfo_outline
11complement(2833179..2833358)PHAGE_Klebsi_phiKO2_NC_005857: Gp3; NCTC11111_02899; phage(gi46402089)5.15e-21Showinfo_outline
12complement(2833352..2835073)PHAGE_Klebsi_phiKO2_NC_005857: putative large terminase subunit; NCTC11111_02900; phage(gi46402088)0.0Showinfo_outline
13complement(2835073..2835507)PHAGE_Klebsi_phiKO2_NC_005857: putative small terminase subunit; NCTC11111_02901; phage(gi46402087)2.20e-30Showinfo_outline
14complement(2835843..2836205)PHAGE_Klebsi_phiKO2_NC_005857: Gp60; NCTC11111_02902; phage(gi46402146)7.99e-72Showinfo_outline
15complement(2836712..2837089)Uncharacterised protein; NCTC11111_029030.0Showinfo_outline
16complement(2837092..2837361)Uncharacterised protein; NCTC11111_029040.0Showinfo_outline
172838107..2838763PHAGE_Shigel_Stx_NC_029120: hypothetical protein; NCTC11111_02905; phage(gi985761266)1.41e-81Showinfo_outline
18complement(2838899..2839168)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11111_02906; phage(gi428782715)7.33e-39Showinfo_outline
19complement(2839176..2839790)PHAGE_Salmon_ST64B_NC_004313: lytic enzyme (putative glycohydrolase); NCTC11111_02907; phage(gi23505496)2.53e-124Showinfo_outline
20complement(2839790..2840071)PHAGE_Entero_mEp390_NC_019721: putative holin; NCTC11111_02908; phage(gi428782713)2.98e-26Showinfo_outline
21complement(2840058..2840444)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC11111_02909; phage(gi100130)4.60e-76Showinfo_outline
222840495..2841214Uncharacterised protein; NCTC11111_029100.0Showinfo_outline
23complement(2841433..2842284)Uncharacterised protein; NCTC11111_029110.0Showinfo_outline
24complement(2842448..2843137)PHAGE_Klebsi_phiKO2_NC_005857: lambda Q-like transcription antiterminator; NCTC11111_02912; phage(gi46402124)3.15e-12Showinfo_outline
25complement(2843159..2843545)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC11111_02913; phage(gi19549032)4.73e-68Showinfo_outline
262843640..2843816Uncharacterised protein; NCTC11111_029140.0Showinfo_outline
272843813..2844067PHAGE_Entero_P88_NC_026014: MarR family transcriptional regulator; NCTC11111_02915; phage(gi744692709)2.95e-16Showinfo_outline
282844064..2844408Uncharacterised protein; NCTC11111_029160.0Showinfo_outline
292844401..2844730Uncharacterised protein; NCTC11111_029170.0Showinfo_outline
302844727..2845029phage protein; NCTC11111_029180.0Showinfo_outline
312845075..2845320Excisionase domain protein; NCTC11111_029190.0Showinfo_outline
322845301..2846428PHAGE_Entero_HK022_NC_002166: integrase; predicted; phage integrase; NCTC11111_02920(gi9634144)3.88e-69Showinfo_outline
332847076..2847090attR0.0Showinfo_outline
34complement(2847155..2848405)isocitrate dehydrogenase; NCTC11111_029220.0Showinfo_outline
352848577..2849230ribosomal large subunit pseudouridine synthase E (rRNA pseudouridylate synthase E); NCTC11111_029230.0Showinfo_outline
362849240..2849701PHAGE_Strept_YDN12_NC_028974: hydrolase; NCTC11111_02924; phage(gi971762176)1.07e-06Showinfo_outline

Region 5, total 14 CDS

#CDS PositionBLAST HitE-ValueSequence
13063113..3063126attL0.0Showinfo_outline
2complement(3064448..3064978)PHAGE_Escher_pro147_NC_028896: tail fibers protein; NCTC11111_03133; phage(gi971753728)3.02e-96Showinfo_outline
3complement(3064982..3065833)PHAGE_Escher_pro147_NC_028896: tail fibers protein; NCTC11111_03134; phage(gi971753729)3.65e-58Showinfo_outline
4complement(3065988..3066434)Uncharacterised protein; NCTC11111_031350.0Showinfo_outline
53067132..3067314regulator of cell division encoded by prophage; NCTC11111_031360.0Showinfo_outline
63067317..3067520phage protein; NCTC11111_031370.0Showinfo_outline
73067601..3069538PHAGE_Salmon_118970_sal3_NC_031940: baseplate hub subunit; NCTC11111_03138; phage(gi100107)4.18e-71Showinfo_outline
83069605..3069856putative excisionase; NCTC11111_031390.0Showinfo_outline
93069825..3070844PHAGE_Salmon_118970_sal3_NC_031940: baseplate subunit; NCTC11111_03140; phage(gi100105)6.65e-109Showinfo_outline
103071252..3071911putative carrier/transport protein; NCTC11111_031410.0Showinfo_outline
113072002..3072331PHAGE_Podovi_Lau218_NC_024329: sulfur transfer protein, DsrC; NCTC11111_03142; phage(gi971848691)1.54e-06Showinfo_outline
12complement(3072328..3072606)acylphosphatase; NCTC11111_031430.0Showinfo_outline
133072716..3073891PHAGE_Strept_20617_NC_023503: methyltransferase; NCTC11111_03144; phage(gi588295144)1.64e-32Showinfo_outline
143073529..3073542attR0.0Showinfo_outline

Region 6, total 21 CDS

#CDS PositionBLAST HitE-ValueSequence
13225149..3225907PHAGE_Escher_RCS47_NC_042128: DNA helicase; NCTC11111_03278; phage(gi100021)1.73e-13Showinfo_outline
2complement(3225954..3227156)PHAGE_Stx2_c_1717_NC_011357: penicillin-binding protein 6b; NCTC11111_03279; phage(gi209447203)1.32e-127Showinfo_outline
33227403..3227540glutathione S-transferase; NCTC11111_032800.0Showinfo_outline
43227753..3228163PHAGE_Escher_pro483_NC_028943: tail fiber protein; NCTC11111_03281; phage(gi971758531)5.54e-84Showinfo_outline
53228184..3228627PHAGE_Escher_pro483_NC_028943: tail fiber assembly protein; NCTC11111_03282; phage(gi971758532)1.96e-104Showinfo_outline
6complement(3228599..3229201)PHAGE_Escher_pro483_NC_028943: putative tail fiber assembly protein; NCTC11111_03283; phage(gi971758533)5.13e-128Showinfo_outline
7complement(3229201..3229971)PHAGE_Escher_pro483_NC_028943: tail fiber protein; NCTC11111_03284; phage(gi971758534)2.44e-51Showinfo_outline
8complement(3229971..3230543)PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail protein; NCTC11111_03285; phage(gi971741548)1.38e-35Showinfo_outline
9complement(3230547..3231473)PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: baseplate J protein; NCTC11111_03286; phage(gi971741547)8.87e-87Showinfo_outline
10complement(3231661..3231813)Uncharacterised protein; NCTC11111_032870.0Showinfo_outline
11complement(3231888..3232070)Uncharacterised protein; NCTC11111_032880.0Showinfo_outline
12complement(3232067..3232612)PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC11111_03289; phage(gi422935930)2.34e-89Showinfo_outline
13complement(3232596..3232892)PHAGE_Entero_phiP27_NC_003356: putative holin; NCTC11111_03290; phage(gi18249893)2.41e-23Showinfo_outline
14complement(3232882..3233274)PHAGE_Entero_phiP27_NC_003356: putative holin; NCTC11111_03291; phage(gi18249892)3.89e-45Showinfo_outline
15complement(3233463..3233750)Uncharacterised protein; NCTC11111_032920.0Showinfo_outline
16complement(3233778..3234245)PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: mor transcription activator family protein; NCTC11111_03293; phage(gi971741519)2.15e-25Showinfo_outline
17complement(3234345..3234683)PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; NCTC11111_03294; phage(gi971741516)4.18e-16Showinfo_outline
18complement(3234680..3235075)PHAGE_Pseudo_D3112_NC_005178: hypothetical protein; NCTC11111_03295; phage(gi38229130)2.56e-17Showinfo_outline
19complement(3235047..3235325)Uncharacterised protein; NCTC11111_032960.0Showinfo_outline
20complement(3235674..3236147)PROPHAGE_Escher_Sakai: phage transposase; NCTC11111_03297; phage(gi15834199)1.73e-25Showinfo_outline
21complement(3236147..3236383)PHAGE_Haemop_SuMu_NC_019455: Mu-like prophage FluMu DNA-binding protein Ner; NCTC11111_03298; phage(gi418489037)4.67e-17Showinfo_outline

Region 7, total 19 CDS

#CDS PositionBLAST HitE-ValueSequence
13520870..3520886attL0.0Showinfo_outline
2complement(3531552..3532097)PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC11111_03583; phage(gi100035)3.70e-130Showinfo_outline
3complement(3532845..3533051)PHAGE_Entero_DE3_NC_042057: membrane-associated initiation of head vertex; predicted; phage protein; NCTC11111_03584(gi100034)6.10e-43Showinfo_outline
43533337..3533747PHAGE_Entero_DE3_NC_042057: replication and recombination DNA helicase; NCTC11111_03585; phage(gi100033)2.18e-95Showinfo_outline
53534039..3534332PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC11111_03586; phage(gi100032)3.22e-64Showinfo_outline
6complement(3534364..3534825)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC11111_03587; phage(gi100031)1.78e-106Showinfo_outline
7complement(3534822..3535298)PHAGE_Entero_c_1_NC_019706: lysozyme; NCTC11111_03588; phage(gi428781798)2.07e-109Showinfo_outline
8complement(3535285..3535590)PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC11111_03589; phage(gi24371577)2.22e-47Showinfo_outline
9complement(3535912..3536397)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; NCTC11111_03590; phage(gi169257244)2.97e-55Showinfo_outline
103536546..3536842PHAGE_Escher_PA28_NC_041935: DNA helicase; NCTC11111_03591; phage(gi100021)4.29e-67Showinfo_outline
113536848..3537633PHAGE_Entero_933W_NC_000924: Bet protein; NCTC11111_03592; phage(gi9632480)0.0Showinfo_outline
123537630..3538310PHAGE_Stx2_c_1717_NC_011357: exonuclease; NCTC11111_03593; phage(gi209447136)5.00e-171Showinfo_outline
133538307..3538489PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC11111_03594; phage(gi100011)2.51e-38Showinfo_outline
143538462..3538653PHAGE_Escher_PA28_NC_041935: exonuclease A; NCTC11111_03595; phage(gi100018)2.77e-38Showinfo_outline
153538730..3538945PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC11111_03596; phage(gi100017)6.50e-45Showinfo_outline
163539265..3539597PHAGE_Entero_ST104_NC_005841: ORF6; NCTC11111_03597; phage(gi46358654)1.08e-62Showinfo_outline
173539575..3539853PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC11111_03598; phage(gi849250253)7.38e-58Showinfo_outline
183539771..3539787attR0.0Showinfo_outline
193540052..3541215PHAGE_Shigel_Stx_NC_029120: integrase; NCTC11111_03599; phage(gi985761248)0.0Showinfo_outline

Region 8, total 19 CDS

#CDS PositionBLAST HitE-ValueSequence
13896733..3896744attL0.0Showinfo_outline
2complement(3901377..3902099)PHAGE_Entero_BP_4795_NC_004813: putative replication protein P; NCTC11111_03910; phage(gi157166012)4.56e-159Showinfo_outline
3complement(3902096..3903100)PHAGE_Entero_BP_4795_NC_004813: putative replication protein O; NCTC11111_03911; phage(gi157166011)4.80e-144Showinfo_outline
4complement(3903112..3903651)PHAGE_Entero_phi80_NC_021190: CII decision making protein; NCTC11111_03912; phage(gi824479625)3.94e-84Showinfo_outline
5complement(3903682..3903909)PHAGE_Salmon_BTP1_NC_042346: clamp-loader subunit; NCTC11111_03913; phage(gi100040)5.69e-31Showinfo_outline
63904227..3904712PHAGE_Salmon_BTP1_NC_042346: RegA; NCTC11111_03914; phage(gi100039)4.67e-96Showinfo_outline
73904806..3905831Uncharacterised protein; NCTC11111_039150.0Showinfo_outline
83905812..3906261Uncharacterised protein; NCTC11111_039160.0Showinfo_outline
93906734..3906940PHAGE_Entero_HK225_NC_019717: Kil protein; NCTC11111_03917; phage(gi428782413)9.87e-36Showinfo_outline
103907016..3907312PHAGE_Entero_BP_4795_NC_004813: putative host-nuclease inhibitor protein Gam; NCTC11111_03918; phage(gi157165999)2.19e-66Showinfo_outline
113907318..3908103PHAGE_Entero_BP_4795_NC_004813: putative Bet protein; NCTC11111_03919; phage(gi157165998)0.0Showinfo_outline
123908100..3908780PHAGE_Entero_BP_4795_NC_004813: putative exonuclease; NCTC11111_03920; phage(gi157165997)4.69e-169Showinfo_outline
133908777..3908959PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC11111_03921; phage(gi100011)3.56e-38Showinfo_outline
143908932..3909123PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC11111_03922; phage(gi157165995)7.36e-39Showinfo_outline
153909200..3909415PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC11111_03923; phage(gi157165994)1.54e-47Showinfo_outline
163909514..3909732PHAGE_Entero_BP_4795_NC_004813: DksA-like zinc finger domain containing protein; NCTC11111_03924; phage(gi157165993)4.98e-41Showinfo_outline
173909780..3910058PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC11111_03925; phage(gi849250253)1.41e-62Showinfo_outline
183909881..3909892attR0.0Showinfo_outline
193910257..3911420PHAGE_Shigel_SfIV_NC_022749: integrase; NCTC11111_03926; phage(gi557307554)0.0Showinfo_outline

Region 9, total 24 CDS

#CDS PositionBLAST HitE-ValueSequence
14216837..4216862attL0.0Showinfo_outline
24222230..4222478PHAGE_Entero_mEp460_NC_019716: DinI-like protein; NCTC11111_04221; phage(gi428782337)3.04e-53Showinfo_outline
34223087..4223320PHAGE_Salmon_118970_sal3_NC_031940: base plate hub; NCTC11111_04222; phage(gi100103)8.68e-06Showinfo_outline
44223701..4224291PHAGE_Entero_Mu_NC_000929: Gin; NCTC11111_04223; phage(gi9633542)3.18e-29Showinfo_outline
5complement(4224964..4228317)PHAGE_Entero_9g_NC_024146: side tail fiber; NCTC11111_04225; phage(gi640885143)0.0Showinfo_outline
6complement(4228382..4230292)PHAGE_Entero_mEp460_NC_019716: terminase large subunit; NCTC11111_04226; phage(gi428782318)0.0Showinfo_outline
7complement(4230292..4230783)PHAGE_Entero_mEp460_NC_019716: terminase small subunit; terminase,; phage small subunit; NCTC11111_04227(gi428782317)3.19e-89Showinfo_outline
8complement(4231336..4231542)PHAGE_Entero_DE3_NC_042057: membrane-associated initiation of head vertex; predicted; phage protein; NCTC11111_04228(gi100034)4.29e-33Showinfo_outline
9complement(4231838..4232011)GnsA/GnsB family transcriptional regulator; NCTC11111_042290.0Showinfo_outline
10complement(4233262..4233759)PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; NCTC11111_04231; phage(gi16765210)3.17e-62Showinfo_outline
11complement(4233756..4234289)PHAGE_Entero_mEp460_NC_019716: endolysin; NCTC11111_04232; phage(gi428782372)1.15e-121Showinfo_outline
124234403..4234663Uncharacterised protein; NCTC11111_042330.0Showinfo_outline
13complement(4234611..4235162)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC11111_04234; phage(gi428782371)2.48e-45Showinfo_outline
14complement(4235167..4235373)PHAGE_Entero_mEp460_NC_019716: porin; NCTC11111_04235; phage(gi428782370)1.92e-38Showinfo_outline
154236651..4236863cold shock-like protein CspF; NCTC11111_042370.0Showinfo_outline
164237495..4238112PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC11111_04238; phage(gi428782350)7.87e-137Showinfo_outline
174238240..4238776PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC11111_04239; phage(gi428782349)1.02e-130Showinfo_outline
184238767..4239129PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC11111_04240; phage(gi428782348)8.88e-82Showinfo_outline
194239129..4239749PHAGE_Entero_cdtI_NC_009514: Valyl-tRNA synthetase; NCTC11111_04241; phage(gi148609417)7.40e-136Showinfo_outline
20complement(4240226..4240945)Uncharacterised protein; NCTC11111_042420.0Showinfo_outline
21complement(4241231..4242454)PHAGE_Entero_cdtI_NC_009514: Phage integrase; NCTC11111_04243; phage(gi148609414)0.0Showinfo_outline
22complement(4242840..4243517)PHAGE_Strept_VWB_NC_005345: hypothetical protein; NCTC11111_04244; phage(gi41057269)1.71e-06Showinfo_outline
23complement(4243532..4243978)PHAGE_Pseudo_vB_PaeS_PAO1_Ab18_NC_026594: hypothetical protein; NCTC11111_04245; phage(gi764160510)3.71e-05Showinfo_outline
244245525..4245550attR0.0Showinfo_outline
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 4980200 bps
Phages: 9
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

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