Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGBE01000003.1

GenInfo (GI) Number: 0000000000

Download Results: UGBE01000003.1.PHASTER.zip

gi|00000000|ref|UGBE01000003.1| Escherichia coli strain NCTC9011 genome assembly, contig: 4923156, gc%: 50.80%

Download summary as .txt file: summary.txt file_download

Total: 5 prophage regions have been identified, of which 4 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
150.8Kbintact130702958246-3009055 info_outlinePHAGE_Entero_lambda_NC_001416(30)49.99%Show info_outline
256.2Kbintact150673130710-3186970 info_outlinePHAGE_Entero_P88_NC_026014(41)52.55%Show info_outline
346Kbintact100503559407-3605464 info_outlinePHAGE_Entero_DE3_NC_042057(16)52.11%Show info_outline
46.8Kbincomplete30113860767-3867566 info_outlinePHAGE_Entero_I2_2_NC_001332(4)42.19%Show info_outline
561.1Kbintact150583904329-3965483 info_outlinePHAGE_Entero_mEp460_NC_019716(22)48.68%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGBE01000003.1| Escherichia coli strain NCTC9011 genome assembly, contig: 4923156, gc%: 50.80%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 72 CDS

#CDS PositionBLAST HitE-ValueSequence
12958246..2958260attL0.0Showinfo_outline
2complement(2958334..2959404)PHAGE_Entero_HK106_NC_019768: integrase; NCTC9011_03100; phage(gi428783305)0.0Showinfo_outline
3complement(2960019..2960177)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9011_03101; phage(gi100007)3.29e-08Showinfo_outline
4complement(2960292..2961089)PHAGE_Entero_UAB_Phi20_NC_031019: hypothetical protein; NCTC9011_03102; phage(gi100055)3.36e-78Showinfo_outline
5complement(2961100..2961855)PHAGE_Salmon_BTP1_NC_042346: hypothetical protein; NCTC9011_03103; phage(gi100023)1.40e-178Showinfo_outline
6complement(2961857..2962264)PHAGE_Escher_P13374_NC_018846: hypothetical protein; NCTC9011_03104; phage(gi410491609)1.68e-93Showinfo_outline
7complement(2962261..2962482)PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9011_03105; phage(gi100016)1.70e-44Showinfo_outline
8complement(2962581..2962796)PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9011_03106; phage(gi100017)1.65e-47Showinfo_outline
9complement(2962873..2963064)PHAGE_Escher_PA28_NC_041935: exonuclease A; NCTC9011_03107; phage(gi100018)7.36e-39Showinfo_outline
10complement(2963037..2963219)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9011_03108; phage(gi100011)2.99e-36Showinfo_outline
11complement(2963216..2963896)PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9011_03109; phage(gi100019)3.26e-166Showinfo_outline
12complement(2963893..2964678)PHAGE_Entero_933W_NC_000924: Bet protein; NCTC9011_03110; phage(gi9632480)0.0Showinfo_outline
13complement(2964684..2964980)PHAGE_Escher_PA28_NC_041935: DNA helicase; NCTC9011_03111; phage(gi100021)4.29e-67Showinfo_outline
14complement(2965034..2965198)PHAGE_Entero_SfI_NC_027339: host-killing protein; NCTC9011_03112; phage(gi849250261)2.28e-27Showinfo_outline
15complement(2965404..2965772)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9011_03114; phage(gi100017)8.24e-85Showinfo_outline
16complement(2965955..2966155)PHAGE_Entero_DE3_NC_042057: exonuclease A; NCTC9011_03115; phage(gi100018)7.13e-44Showinfo_outline
172966369..2966950PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC9011_03116; phage(gi100016)1.11e-110Showinfo_outline
18complement(2966966..2967238)PHAGE_Entero_VT2_Sakai_NC_000902: antitermination protein; NCTC9011_03117; phage(gi9633417)6.66e-59Showinfo_outline
19complement(2967671..2968162)Uncharacterised protein; NCTC9011_031180.0Showinfo_outline
20complement(2968200..2969051)Uncharacterised protein; NCTC9011_031190.0Showinfo_outline
21complement(2969151..2969804)PHAGE_Stx2_II_NC_004914: CI protein; NCTC9011_03120; phage(gi32171122)1.45e-161Showinfo_outline
222969921..2970136PHAGE_Entero_VT2_Sakai_NC_000902: similar to C2 of bacteriophage L; NCTC9011_03121; phage(gi9633420)1.00e-47Showinfo_outline
232970278..2970574PHAGE_Stx2_vB_EcoP_24B_NC_027984: CII; NCTC9011_03122; phage(gi937456259)1.86e-62Showinfo_outline
242970607..2971506PHAGE_Entero_DE3_NC_042057: DCTP pyrophosphatase; NCTC9011_03123; phage(gi100024)0.0Showinfo_outline
252971503..2972204PHAGE_Entero_DE3_NC_042057: DNA primase subunit; NCTC9011_03124; phage(gi100025)3.10e-172Showinfo_outline
262972201..2972491PHAGE_Escher_PA28_NC_041935: replication and recombination DNA helicase; NCTC9011_03125; phage(gi100033)1.10e-60Showinfo_outline
272972565..2973005PHAGE_Entero_lambda_NC_001416: NinB; NCTC9011_03126; phage(gi9626298)3.04e-104Showinfo_outline
282973002..2973529PHAGE_Entero_Sf101_NC_027398: DNA methylase; NCTC9011_03127; phage(gi849122310)1.51e-128Showinfo_outline
292973705..2974046PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC9011_03128; phage(gi100030)5.53e-78Showinfo_outline
302974253..2974615PHAGE_Salmon_118970_sal4_NC_030919: membrane-associated initiation of head vertex; NCTC9011_03129; phage(gi100034)5.78e-38Showinfo_outline
312974838..2975221PHAGE_Shigel_Stx_NC_029120: antitermination protein Q; NCTC9011_03130; phage(gi985761278)4.06e-72Showinfo_outline
32complement(2975411..2976493)outer membrane porin protein NmpC; NCTC9011_031310.0Showinfo_outline
332977067..2977282PHAGE_Entero_VT2phi_272_NC_028656: holin; NCTC9011_03132; phage(gi966197762)5.28e-37Showinfo_outline
342977287..2977631PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9011_03133; phage(gi428782371)1.32e-52Showinfo_outline
35complement(2977597..2977869)ybl58; NCTC9011_031340.0Showinfo_outline
362977975..2978508PHAGE_Entero_mEp460_NC_019716: endolysin; NCTC9011_03135; phage(gi428782372)5.66e-124Showinfo_outline
372978505..2978963PHAGE_Entero_mEp235_NC_019708: lysis protein Rz; NCTC9011_03136; phage(gi428781868)5.45e-99Showinfo_outline
382979169..2979657PHAGE_Entero_HK106_NC_019768: hypothetical protein; NCTC9011_03137; phage(gi428783343)3.61e-117Showinfo_outline
39complement(2980126..2980290)Arginyl-tRNA synthetase; NCTC9011_031380.0Showinfo_outline
40complement(2980336..2980746)PHAGE_Entero_DE3_NC_042057: replication and recombination DNA helicase; NCTC9011_03139; phage(gi100033)9.20e-71Showinfo_outline
412981426..2981971PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC9011_03140; phage(gi100035)3.88e-129Showinfo_outline
422981946..2983871PHAGE_Entero_DE3_NC_042057: DNA polymerase; NCTC9011_03141; phage(gi100036)0.0Showinfo_outline
432983868..2984074PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9011_03142; phage(gi100037)4.55e-43Showinfo_outline
442984071..2985672PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9011_03143; phage(gi100038)0.0Showinfo_outline
452985653..2986972PHAGE_Entero_DE3_NC_042057: RegA; NCTC9011_03144; phage(gi100039)0.0Showinfo_outline
462986982..2987314PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9011_03145; phage(gi100040)2.64e-73Showinfo_outline
472987370..2988395PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9011_03146; phage(gi100041)0.0Showinfo_outline
482988437..2988835PHAGE_Entero_DE3_NC_042057: sliding clamp DNA polymerase; NCTC9011_03147; phage(gi100042)2.12e-82Showinfo_outline
492988847..2989200PHAGE_Entero_DE3_NC_042057: RNA polymerase binding protein; NCTC9011_03148; phage(gi100043)2.28e-79Showinfo_outline
502989212..2989790PHAGE_Entero_DE3_NC_042057: ssDNA binding protein; NCTC9011_03149; phage(gi100044)4.30e-129Showinfo_outline
512989787..2990182PHAGE_Entero_DE3_NC_042057: loader of DNA helicase; NCTC9011_03150; phage(gi100045)2.84e-89Showinfo_outline
522990190..2990930PHAGE_Entero_DE3_NC_042057: late promoter transcription; NCTC9011_03151; phage(gi100046)6.05e-169Showinfo_outline
532990946..2991368PHAGE_Entero_DE3_NC_042057: dsDNA binding protein; NCTC9011_03152; phage(gi100047)5.99e-86Showinfo_outline
542991350..2991784PHAGE_Entero_DE3_NC_042057: rnaseH; NCTC9011_03153; phage(gi100048)1.06e-101Showinfo_outline
552991777..2992412PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC9011_03154; phage(gi100049)8.54e-132Showinfo_outline
562992425..2993537PROPHAGE_Escher_MG1655: IS186 transposase; NCTC9011_03155; phage(gi90111427)0.0Showinfo_outline
572993560..2993700transposase; NCTC9011_031560.0Showinfo_outline
582993750..2995687PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC9011_03157; phage(gi100049)0.0Showinfo_outline
592995684..2996013PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9011_03158; phage(gi100050)5.12e-76Showinfo_outline
602996013..2996711PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9011_03159; phage(gi100051)1.28e-173Showinfo_outline
612996717..2997460PHAGE_Entero_mEp460_NC_019716: tail fiber component; NCTC9011_03160; phage(gi428782332)4.54e-179Showinfo_outline
622997457..2998029PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9011_03161; phage(gi100053)9.87e-131Showinfo_outline
632998090..3001572PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC9011_03162; phage(gi100054)0.0Showinfo_outline
643001639..3002238PHAGE_Entero_mEp460_NC_019716: Lom protein; NCTC9011_03163; phage(gi428782335)1.60e-127Showinfo_outline
653002303..3004675PHAGE_Entero_JenP2_NC_028997: tail fiber protein; NCTC9011_03164; phage(gi971763991)4.72e-152Showinfo_outline
663004672..3004914PHAGE_Escher_vB_EcoM_FFH2_NC_024134: hypothetical protein; NCTC9011_03165; phage(gi640883493)2.00e-10Showinfo_outline
67complement(3004849..3005226)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC9011_03166; phage(gi557307573)4.00e-87Showinfo_outline
68complement(3005271..3005546)PHAGE_Entero_P1_NC_005856: InsA; NCTC9011_03167; phage(gi46401643)4.76e-62Showinfo_outline
69complement(3005580..3006320)membrane protein; NCTC9011_031680.0Showinfo_outline
703007126..3007140attR0.0Showinfo_outline
71complement(3007231..3007707)putative phosphatidylethanolamine-binding protein; NCTC9011_031690.0Showinfo_outline
72complement(3007766..3009055)PHAGE_Mycoba_Lukilu_NC_041901: chaperone for tail fiber formation; NCTC9011_03170; phage(gi100190)3.46e-05Showinfo_outline

Region 2, total 69 CDS

#CDS PositionBLAST HitE-ValueSequence
13130710..3130721attL0.0Showinfo_outline
2complement(3131766..3133532)PHAGE_Bacill_SPbeta_NC_001884: ABC transporter; NCTC9011_03290; phage(gi9630145)6.36e-19Showinfo_outline
3complement(3133655..3134620)PHAGE_Bacill_G_NC_023719: gp344; NCTC9011_03291; phage(gi593777800)5.74e-68Showinfo_outline
43135165..3135659leucine-responsive transcriptional regulator; NCTC9011_032920.0Showinfo_outline
53135794..3139783PHAGE_Mycoba_Courthouse_NC_023690: gp201; NCTC9011_03293; phage(gi593774477)3.03e-100Showinfo_outline
63139867..3140388PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; NCTC9011_03294; phage(gi17546156)2.23e-14Showinfo_outline
73140613..3141215PROPHAGE_Ralsto_GMI1000: isrso11-transposase orfb protein; NCTC9011_03295; phage(gi17546155)4.08e-80Showinfo_outline
83141378..3141989outer-membrane lipoprotein carrier protein; NCTC9011_032960.0Showinfo_outline
93142000..3143343PHAGE_Bacill_G_NC_023719: gp70; NCTC9011_03297; phage(gi593777538)4.38e-102Showinfo_outline
103143434..3144726PHAGE_Bacill_G_NC_023719: gp287; NCTC9011_03298; phage(gi593777743)3.28e-09Showinfo_outline
11complement(3145029..3145169)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC9011_03299; phage(gi744692752)1.58e-26Showinfo_outline
12complement(3145361..3145621)PHAGE_Yersin_L_413C_NC_004745: Ogr; NCTC9011_03300; phage(gi30065732)1.01e-08Showinfo_outline
13complement(3145664..3146764)PHAGE_Entero_P88_NC_026014: gene D protein; NCTC9011_03301; phage(gi744692751)0.0Showinfo_outline
143146922..3148106PHAGE_Entero_P88_NC_026014: tail sheath monomer; NCTC9011_03302; phage(gi744692749)0.0Showinfo_outline
153148106..3148618PHAGE_Entero_P88_NC_026014: major tail tube protein; NCTC9011_03303; phage(gi744692748)8.40e-121Showinfo_outline
163148673..3149038PHAGE_Entero_P88_NC_026014: tail protein; NCTC9011_03304; phage(gi744692747)3.70e-81Showinfo_outline
173149189..3151612PHAGE_Entero_P88_NC_026014: tail tape measure protein; NCTC9011_03305; phage(gi744692745)0.0Showinfo_outline
183151581..3152207PHAGE_Entero_P88_NC_026014: tail tape measure protein; NCTC9011_03306; phage(gi744692745)5.50e-58Showinfo_outline
193152220..3152708PHAGE_Entero_P88_NC_026014: tail protein; NCTC9011_03307; phage(gi744692744)1.91e-116Showinfo_outline
20complement(3152735..3153334)PHAGE_Entero_P88_NC_026014: DNA invertase; NCTC9011_03308; phage(gi744692743)1.40e-101Showinfo_outline
213153858..3154451PHAGE_Entero_HK106_NC_019768: tail fiber assembly protein; NCTC9011_03309; phage(gi428783304)1.19e-77Showinfo_outline
22complement(3154423..3154863)PHAGE_Escher_pro483_NC_028943: tail fiber assembly protein; NCTC9011_03310; phage(gi971758532)7.98e-69Showinfo_outline
23complement(3154886..3156616)PHAGE_Entero_P88_NC_026014: tail fiber protein; NCTC9011_03311; phage(gi744692739)3.87e-119Showinfo_outline
24complement(3156613..3157221)PHAGE_Entero_P88_NC_026014: tail protein; NCTC9011_03312; phage(gi744692738)8.55e-92Showinfo_outline
25complement(3157214..3158110)PHAGE_Entero_P88_NC_026014: baseplate assembly protein J; NCTC9011_03313; phage(gi744692737)0.0Showinfo_outline
26complement(3158114..3158464)PHAGE_Entero_P88_NC_026014: lysozyme family baseplate assembly protein; NCTC9011_03314; phage(gi744692736)1.65e-80Showinfo_outline
27complement(3158461..3159042)PHAGE_Entero_P88_NC_026014: baseplate assembly protein V; NCTC9011_03315; phage(gi744692735)3.56e-135Showinfo_outline
28complement(3159039..3159683)PHAGE_Entero_P88_NC_026014: tail protein; NCTC9011_03316; phage(gi744692734)1.59e-151Showinfo_outline
29complement(3159667..3160134)PHAGE_Entero_P88_NC_026014: tail completion protein; NCTC9011_03317; phage(gi744692733)1.83e-112Showinfo_outline
30complement(3160303..3160680)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC9011_03318; phage(gi744692732)3.92e-71Showinfo_outline
31complement(3160677..3161069)PHAGE_Entero_P88_NC_026014: endolysin; NCTC9011_03319; phage(gi744692731)5.63e-94Showinfo_outline
32complement(3161066..3161389)PHAGE_Entero_P88_NC_026014: holin; NCTC9011_03320; phage(gi744692730)3.26e-72Showinfo_outline
33complement(3161392..3161592)PHAGE_Entero_P88_NC_026014: tail component protein; NCTC9011_03321; phage(gi744692729)6.35e-43Showinfo_outline
34complement(3161592..3162086)PHAGE_Entero_P88_NC_026014: head completion-stabilization protein; NCTC9011_03322; phage(gi744692728)1.49e-115Showinfo_outline
35complement(3162189..3162989)PHAGE_Entero_P88_NC_026014: terminase endonuclease subunit; NCTC9011_03323; phage(gi744692727)0.0Showinfo_outline
36complement(3163035..3164087)PHAGE_Entero_P88_NC_026014: major capsid protein; NCTC9011_03324; phage(gi744692726)0.0Showinfo_outline
37complement(3164111..3164947)PHAGE_Entero_P88_NC_026014: capsid scaffolding protein; NCTC9011_03325; phage(gi744692725)0.0Showinfo_outline
383165101..3166852PHAGE_Entero_P88_NC_026014: terminase ATPase subunit; NCTC9011_03326; phage(gi744692724)0.0Showinfo_outline
393166852..3167898PHAGE_Entero_P88_NC_026014: PBSX family portal protein; NCTC9011_03327; phage(gi744692723)0.0Showinfo_outline
40complement(3168390..3168650)PHAGE_Entero_cdtI_NC_009514: Valyl-tRNA synthetase; NCTC9011_03328; phage(gi148609417)6.58e-46Showinfo_outline
41complement(3168661..3168924)PHAGE_Salmon_FSLSP030_NC_021779: hypothetical protein; NCTC9011_03329; phage(gi525972396)3.05e-41Showinfo_outline
42complement(3168926..3169417)PHAGE_Pectob_ZF40_NC_019522: hypothetical protein; NCTC9011_03330; phage(gi422936676)6.83e-69Showinfo_outline
43complement(3169420..3169734)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC9011_03331; phage(gi744692720)1.69e-68Showinfo_outline
44complement(3169731..3170063)PHAGE_Entero_P88_NC_026014: carboxylate-amine ligase; NCTC9011_03332; phage(gi744692719)7.21e-73Showinfo_outline
45complement(3170127..3170438)PHAGE_Entero_P88_NC_026014: chromosome partitioning protein; NCTC9011_03333; phage(gi744692718)6.69e-65Showinfo_outline
46complement(3170443..3171402)PHAGE_Entero_P88_NC_026014: recombinase; NCTC9011_03334; phage(gi744692717)0.0Showinfo_outline
47complement(3171479..3174301)PHAGE_Entero_P88_NC_026014: replication protein; NCTC9011_03335; phage(gi744692716)0.0Showinfo_outline
48complement(3174308..3174673)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC9011_03336; phage(gi744692715)7.68e-80Showinfo_outline
49complement(3175344..3176174)PHAGE_Entero_P88_NC_026014: putative SPFH domain protein; NCTC9011_03339; phage(gi744692712)0.0Showinfo_outline
50complement(3176171..3176374)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC9011_03340; phage(gi744692711)2.92e-41Showinfo_outline
51complement(3176386..3176685)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC9011_03341; phage(gi744692710)2.73e-56Showinfo_outline
52complement(3176682..3176927)PHAGE_Entero_P88_NC_026014: MarR family transcriptional regulator; NCTC9011_03342; phage(gi744692709)7.85e-52Showinfo_outline
53complement(3176924..3177127)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC9011_03343; phage(gi744692708)8.95e-36Showinfo_outline
54complement(3177151..3177561)Prophage protein; NCTC9011_033440.0Showinfo_outline
55complement(3177655..3177768)PHAGE_Entero_P88_NC_026014: membrane protein; NCTC9011_03345; phage(gi744692707)7.68e-16Showinfo_outline
56complement(3177765..3178007)PHAGE_Entero_P88_NC_026014: DNA modification methyltransferase; NCTC9011_03346; phage(gi744692706)4.25e-52Showinfo_outline
57complement(3178028..3178282)Uncharacterised protein; NCTC9011_033470.0Showinfo_outline
58complement(3178286..3178636)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC9011_03348; phage(gi744692704)1.13e-71Showinfo_outline
593178772..3178963Uncharacterised protein; NCTC9011_033490.0Showinfo_outline
60complement(3178970..3179392)Uncharacterised protein; NCTC9011_033500.0Showinfo_outline
61complement(3179397..3179918)PHAGE_Entero_P88_NC_026014: regulatory protein; NCTC9011_03351; phage(gi744692703)1.79e-05Showinfo_outline
623180023..3180364PHAGE_Entero_WPhi_NC_005056: C; NCTC9011_03352; phage(gi33438928)8.63e-24Showinfo_outline
633180258..3180269attR0.0Showinfo_outline
643180434..3181426PHAGE_Entero_P88_NC_026014: integrase; NCTC9011_03353; phage(gi744692701)3.26e-122Showinfo_outline
653181726..3184170PHAGE_Escher_RCS47_NC_042128: hypothetical protein; NCTC9011_03355; phage(gi100132)0.0Showinfo_outline
663184181..3184798PHAGE_Escher_RCS47_NC_042128: hypothetical protein; NCTC9011_03356; phage(gi100133)5.30e-91Showinfo_outline
673184800..3185663PHAGE_Escher_RCS47_NC_042128: hypothetical protein; NCTC9011_03357; phage(gi100134)1.16e-18Showinfo_outline
68complement(3185695..3185835)transposase; NCTC9011_033580.0Showinfo_outline
69complement(3185858..3186970)PROPHAGE_Escher_MG1655: IS186 transposase; NCTC9011_03359; phage(gi90111427)0.0Showinfo_outline

Region 3, total 55 CDS

#CDS PositionBLAST HitE-ValueSequence
13559407..3559419attL0.0Showinfo_outline
2complement(3559425..3560555)PHAGE_Entero_HK022_NC_002166: integrase; NCTC9011_03736; phage(gi9634144)1.21e-67Showinfo_outline
3complement(3560846..3563317)PHAGE_Salmon_118970_sal3_NC_031940: sliding clamp DNA polymerase; NCTC9011_03737; phage(gi100042)1.65e-68Showinfo_outline
4complement(3563410..3563601)putative prophage protein; NCTC9011_037380.0Showinfo_outline
5complement(3563598..3563786)cell division inhibition protein; NCTC9011_037390.0Showinfo_outline
63564186..3564350Uncharacterised protein; NCTC9011_037410.0Showinfo_outline
7complement(3564354..3564572)putative prophage protein; NCTC9011_037420.0Showinfo_outline
8complement(3564602..3564730)putative prophage protein; NCTC9011_037430.0Showinfo_outline
9complement(3564732..3564968)PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; NCTC9011_03744; phage(gi472340166)6.70e-11Showinfo_outline
10complement(3565184..3565603)PHAGE_Entero_HK022_NC_002166: regulatory protein cI; NCTC9011_03745; phage(gi19343388)1.33e-25Showinfo_outline
113565683..3565937PHAGE_Escher_HK75_NC_016160: regulatory protein cro; NCTC9011_03746; phage(gi356870715)3.76e-24Showinfo_outline
123565934..3566359PHAGE_Entero_mEp237_NC_019704: CII protein; NCTC9011_03747; phage(gi435439306)5.09e-06Showinfo_outline
133566382..3567344PHAGE_Shigel_SfIV_NC_022749: replication protein; NCTC9011_03748; phage(gi557307567)9.14e-126Showinfo_outline
143567385..3567810PHAGE_Shigel_Stx_NC_029120: LygF; NCTC9011_03749; phage(gi985761265)5.52e-65Showinfo_outline
153567985..3568650putative prophage protein; NCTC9011_037500.0Showinfo_outline
163569485..3570540PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC9011_03752; phage(gi557307571)7.08e-111Showinfo_outline
173570541..3570921PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; NCTC9011_03753; phage(gi985761276)7.05e-47Showinfo_outline
183570918..3571739PHAGE_Entero_HK225_NC_019717: late gene regulator Q; NCTC9011_03754; phage(gi428782441)3.47e-115Showinfo_outline
193571966..3572163PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC9011_03755; phage(gi18249887)6.50e-42Showinfo_outline
203572314..3573363PHAGE_Entero_phiP27_NC_003356: putative DNA methylase; NCTC9011_03756; phage(gi18249888)0.0Showinfo_outline
213573413..3573488tRNA0.0Showinfo_outline
223573496..3573572tRNA0.0Showinfo_outline
233573586..3573662tRNA0.0Showinfo_outline
243574638..3576491PHAGE_Stx2_c_86_NC_008464: hypothetical protein; NCTC9011_03762; phage(gi116221995)0.0Showinfo_outline
253576642..3576857PHAGE_Shigel_Ss_VASD_NC_028685: holin lysis protein S; NCTC9011_03763; phage(gi966200466)1.22e-45Showinfo_outline
263576862..3577206PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9011_03764; phage(gi428782371)1.14e-51Showinfo_outline
27complement(3577172..3577444)ybl58; NCTC9011_037650.0Showinfo_outline
283577550..3578083PHAGE_Entero_BP_4795_NC_004813: putative R protein; Qin; phage prophage; NCTC9011_03766(gi157166033)1.66e-124Showinfo_outline
293578276..3578422Uncharacterised protein; NCTC9011_037670.0Showinfo_outline
303578437..3578568PHAGE_Escher_phi191_NC_028660: hypothetical protein; NCTC9011_03768; phage(gi966198023)1.22e-14Showinfo_outline
313578631..3579038PHAGE_Entero_BP_4795_NC_004813: putative endopeptidase Rz; NCTC9011_03769; phage(gi157166036)2.42e-81Showinfo_outline
323579389..3579529Uncharacterised protein; NCTC9011_037700.0Showinfo_outline
333580235..3580783PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC9011_03771; phage(gi100035)6.13e-64Showinfo_outline
343580755..3582683PHAGE_Entero_DE3_NC_042057: DNA polymerase; terminase; phage large subunit; NCTC9011_03772(gi100036)0.0Showinfo_outline
353582667..3582873PHAGE_Entero_HK225_NC_019717: head-tail connector gpW; NCTC9011_03773; phage(gi428782379)5.28e-17Showinfo_outline
363582870..3584462PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9011_03774; phage(gi100038)0.0Showinfo_outline
373584452..3585957PHAGE_Entero_DE3_NC_042057: RegA; NCTC9011_03775; phage(gi100039)1.03e-133Showinfo_outline
383585994..3586341PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9011_03776; phage(gi100040)4.12e-29Showinfo_outline
393586399..3587427PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9011_03777; phage(gi100041)9.49e-147Showinfo_outline
403587479..3587862PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage accessory DNA packaging protein; Lambda FI homolog; NCTC9011_03778; phage(gi169257229)3.27e-08Showinfo_outline
413587855..3588208PHAGE_Entero_DE3_NC_042057: RNA polymerase binding protein; NCTC9011_03779; phage(gi100043)6.08e-53Showinfo_outline
423588224..3588757PHAGE_Entero_DE3_NC_042057: ssDNA binding protein; NCTC9011_03780; phage(gi100044)6.31e-78Showinfo_outline
433588754..3589149PHAGE_Entero_DE3_NC_042057: loader of DNA helicase; NCTC9011_03781; phage(gi100045)2.21e-73Showinfo_outline
443589157..3589909PHAGE_Entero_DE3_NC_042057: late promoter transcription; NCTC9011_03782; phage(gi100046)1.95e-139Showinfo_outline
453589923..3590354PHAGE_Entero_DE3_NC_042057: dsDNA binding protein; NCTC9011_03783; phage(gi100047)2.92e-59Showinfo_outline
463590381..3590794PHAGE_Entero_DE3_NC_042057: rnaseH; NCTC9011_03784; phage(gi100048)3.60e-59Showinfo_outline
473590775..3593348PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC9011_03785; phage(gi100049)0.0Showinfo_outline
483593345..3593674PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9011_03786; phage(gi100050)4.12e-59Showinfo_outline
493593674..3594372PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9011_03787; phage(gi100051)1.28e-137Showinfo_outline
503594383..3595126PHAGE_Entero_BP_4795_NC_004813: putative tail fiber component; NCTC9011_03788; phage(gi157166055)0.0Showinfo_outline
513595123..3595704PHAGE_Stx2_c_1717_NC_011357: putative tail component; NCTC9011_03789; phage(gi209447195)4.84e-134Showinfo_outline
523596048..3599521PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC9011_03790; phage(gi100054)0.0Showinfo_outline
533599589..3600188PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; NCTC9011_03791; phage(gi148609401)5.33e-136Showinfo_outline
543600340..3603366PHAGE_Entero_JenK1_NC_029021: tail fiber protein; NCTC9011_03792; phage(gi971766395)7.30e-113Showinfo_outline
553605464..3605476attR0.0Showinfo_outline

Region 4, total 11 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(3860767..3862032)PHAGE_Entero_I2_2_NC_001332: phage assembly protein; NCTC9011_04028; phage(gi9625382)0.0Showinfo_outline
2complement(3862302..3863072)PHAGE_Entero_I2_2_NC_001332: assembly protein; NCTC9011_04029; phage(gi9625390)1.59e-118Showinfo_outline
3complement(3863073..3863414)PHAGE_Entero_Ike_NC_002014: minor coat protein; NCTC9011_04030; phage(gi9626240)5.13e-28Showinfo_outline
4complement(3863884..3864081)Uncharacterised protein; NCTC9011_040310.0Showinfo_outline
5complement(3864219..3865271)PHAGE_Entero_I2_2_NC_001332: replication initiation protein; NCTC9011_04032; phage(gi9625383)1.37e-144Showinfo_outline
63865441..3865623Uncharacterised protein; NCTC9011_040330.0Showinfo_outline
73865724..3866146Uncharacterised protein; NCTC9011_040340.0Showinfo_outline
83866219..3866794Uncharacterised protein; NCTC9011_040350.0Showinfo_outline
93866806..3866934Permease, cytosine/purine, uracil, thiamine, allantoin family; NCTC9011_040360.0Showinfo_outline
10complement(3866869..3867246)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC9011_04037; phage(gi557307573)4.00e-87Showinfo_outline
11complement(3867291..3867566)PHAGE_Entero_P1_NC_005856: InsA; NCTC9011_04038; phage(gi46401643)4.76e-62Showinfo_outline

Region 5, total 60 CDS

#CDS PositionBLAST HitE-ValueSequence
13904329..3904340attL0.0Showinfo_outline
23912289..3913035PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; NCTC9011_04084; phage(gi971760361)8.52e-10Showinfo_outline
33913124..3913810GntR family transcriptional regulator; NCTC9011_040850.0Showinfo_outline
43913987..3914190PHAGE_Salmon_SSU5_NC_018843: putative selenium-binding protein YdfZ; NCTC9011_04086; phage(gi410491512)4.86e-18Showinfo_outline
5complement(3914225..3915685)putative sugar dehydrogenase; NCTC9011_040870.0Showinfo_outline
6complement(3915774..3917057)PHAGE_Burkho_phi1026b_NC_005284: gp59; NCTC9011_04088; phage(gi38707949)7.81e-28Showinfo_outline
73917842..3918075PHAGE_Salmon_118970_sal3_NC_031940: base plate hub; NCTC9011_04089; phage(gi100103)9.57e-06Showinfo_outline
83918392..3918982PHAGE_Entero_Mu_NC_000929: Gin; NCTC9011_04090; phage(gi9633542)2.03e-30Showinfo_outline
9complement(3919655..3923005)PHAGE_Entero_9g_NC_024146: side tail fiber; NCTC9011_04092; phage(gi640885143)0.0Showinfo_outline
10complement(3923070..3923669)PHAGE_Entero_mEp460_NC_019716: Lom protein; NCTC9011_04093; phage(gi428782335)2.55e-132Showinfo_outline
11complement(3923737..3927216)PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; NCTC9011_04094; phage(gi148609400)0.0Showinfo_outline
12complement(3927277..3927825)PHAGE_Entero_mEp460_NC_019716: tail assembly protein; NCTC9011_04095; phage(gi428782333)2.22e-123Showinfo_outline
13complement(3927822..3928421)PHAGE_Entero_cdtI_NC_009514: putative tail protein; NCTC9011_04096; phage(gi148609398)2.92e-143Showinfo_outline
14complement(3928571..3929269)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9011_04097; phage(gi428782331)4.85e-174Showinfo_outline
15complement(3929279..3929608)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9011_04098; phage(gi428782330)2.54e-77Showinfo_outline
16complement(3929608..3932673)PHAGE_Entero_mEp460_NC_019716: tail length tape measure protein; NCTC9011_04099; phage(gi428782329)0.0Showinfo_outline
17complement(3932645..3932962)PHAGE_Entero_mEp460_NC_019716: tail assembly protein; NCTC9011_04100; phage(gi428782328)9.32e-72Showinfo_outline
18complement(3932983..3933369)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9011_04101; phage(gi428782327)7.28e-88Showinfo_outline
19complement(3933430..3934173)PHAGE_Entero_mEp460_NC_019716: major tail protein; NCTC9011_04102; phage(gi428782326)1.90e-164Showinfo_outline
20complement(3934184..3934585)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9011_04103; phage(gi428782325)8.43e-95Showinfo_outline
21complement(3934582..3935160)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9011_04104; phage(gi428782324)2.77e-135Showinfo_outline
22complement(3935172..3935447)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9011_04105; phage(gi428782323)2.82e-62Showinfo_outline
23complement(3935440..3935763)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9011_04106; phage(gi428782322)2.88e-69Showinfo_outline
24complement(3935850..3937877)PHAGE_Entero_mEp460_NC_019716: putative protease/scaffold protein; NCTC9011_04107; phage(gi428782321)0.0Showinfo_outline
25complement(3937822..3939330)PHAGE_Entero_mEp460_NC_019716: portal protein; NCTC9011_04108; phage(gi428782320)0.0Showinfo_outline
26complement(3939330..3939542)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9011_04109; phage(gi428782319)9.56e-46Showinfo_outline
27complement(3939539..3941641)PHAGE_Entero_mEp460_NC_019716: terminase large subunit; NCTC9011_04110; phage(gi428782318)0.0Showinfo_outline
28complement(3941641..3942135)PHAGE_Entero_mEp460_NC_019716: terminase small subunit; NCTC9011_04111; phage(gi428782317)1.58e-111Showinfo_outline
293942489..3942593Uncharacterised protein; NCTC9011_041120.0Showinfo_outline
30complement(3942688..3942894)PHAGE_Entero_DE3_NC_042057: membrane-associated initiation of head vertex; predicted; phage protein; NCTC9011_04113(gi100034)4.29e-33Showinfo_outline
31complement(3943190..3943363)GnsA/GnsB family transcriptional regulator; NCTC9011_041140.0Showinfo_outline
32complement(3944613..3945110)PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; NCTC9011_04116; phage(gi16765210)1.80e-62Showinfo_outline
33complement(3945107..3945640)PHAGE_Entero_mEp460_NC_019716: endolysin; NCTC9011_04117; phage(gi428782372)4.00e-120Showinfo_outline
34complement(3945637..3945948)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9011_04118; phage(gi428782371)5.32e-40Showinfo_outline
35complement(3945953..3946159)PHAGE_Entero_mEp460_NC_019716: porin; NCTC9011_04119; phage(gi428782370)2.64e-40Showinfo_outline
36complement(3947812..3948564)PHAGE_Entero_mEp460_NC_019716: late gene regulator; NCTC9011_04121; phage(gi428782366)1.41e-177Showinfo_outline
37complement(3948578..3949627)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9011_04122; phage(gi428782365)5.04e-140Showinfo_outline
38complement(3949974..3950225)putative prophage protein; NCTC9011_041230.0Showinfo_outline
39complement(3951332..3952357)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC9011_04125; phage(gi100058)3.64e-35Showinfo_outline
40complement(3952891..3953292)PHAGE_Shigel_Stx_NC_029120: LygF; NCTC9011_04126; phage(gi985761265)8.64e-63Showinfo_outline
41complement(3953333..3954298)PHAGE_Shigel_SfIV_NC_022749: replication protein; NCTC9011_04127; phage(gi557307567)1.39e-69Showinfo_outline
42complement(3954279..3954800)PHAGE_Pectob_ZF40_NC_019522: putative cII repressor; NCTC9011_04128; phage(gi422936652)3.90e-05Showinfo_outline
43complement(3954784..3955011)PHAGE_Pectob_ZF40_NC_019522: putative cro anti-repressor; NCTC9011_04129; phage(gi422936651)2.62e-12Showinfo_outline
443955092..3955499PHAGE_Cronob_phiES15_NC_018454: putative transcriptional repressor DicA; NCTC9011_04130; phage(gi401817574)2.32e-43Showinfo_outline
453955668..3955820PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; NCTC9011_04131; phage(gi472340166)1.36e-11Showinfo_outline
463955832..3956020ybl81; NCTC9011_041320.0Showinfo_outline
47complement(3956165..3956365)Uncharacterised protein; NCTC9011_041330.0Showinfo_outline
483956868..3957056division inhibition protein; NCTC9011_041350.0Showinfo_outline
493957053..3957244putative prophage protein; NCTC9011_041360.0Showinfo_outline
503957338..3959809PHAGE_Salmon_118970_sal3_NC_031940: baseplate hub subunit; NCTC9011_04137; phage(gi100107)1.76e-69Showinfo_outline
513959897..3960133PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage excisionase; NCTC9011_04138; phage(gi169257269)1.10e-20Showinfo_outline
523960168..3960503PROPHAGE_Escher_Sakai: putative integrase; Qin; phage prophage; NCTC9011_04139(gi15832267)1.53e-46Showinfo_outline
533960653..3961447PHAGE_Entero_YYZ_2008_NC_011356: putative integrase; Qin; phage prophage; NCTC9011_04140(gi209427727)6.94e-123Showinfo_outline
54complement(3961449..3961577)protein, truncated; NCTC9011_041410.0Showinfo_outline
553961591..3961602attR0.0Showinfo_outline
56complement(3961635..3962654)PHAGE_Synech_S_SM2_NC_015279: zinc-containing alcohol dehydrogenase superfamily protein; NCTC9011_04142; phage(gi326781942)8.41e-19Showinfo_outline
57complement(3962666..3963880)starvation sensing protein RspA; NCTC9011_041430.0Showinfo_outline
58complement(3964086..3964412)inner membrane protein; NCTC9011_041440.0Showinfo_outline
593964547..3964888protein; NCTC9011_041450.0Showinfo_outline
603964923..3965483PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; NCTC9011_04146; phage(gi9630137)9.67e-09Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 4923156 bps
Phages: 5
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download