Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGCG01000003.1

GenInfo (GI) Number: 0000000000

Download Results: UGCG01000003.1.PHASTER.zip

gi|00000000|ref|UGCG01000003.1| Escherichia coli strain NCTC11022 genome assembly, contig: 4266130, gc%: 50.68%

Download summary as .txt file: summary.txt file_download

Total: 7 prophage regions have been identified, of which 2 regions are intact, 2 regions are incomplete, and 3 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
132Kbincomplete50201057-33137 info_outlinePHAGE_Entero_DE3_NC_042057(3)47.50%Show info_outline
249.9Kbquestionable8044220743-270661 info_outlinePHAGE_Entero_mEp237_NC_019704(7)48.69%Show info_outline
39.4Kbquestionable80121391768-1401204 info_outlinePHAGE_Stx2_c_1717_NC_011357(3)50.96%Show info_outline
439.6Kbintact96151675081-1714729 info_outlinePHAGE_Entero_P4_NC_001609(9)47.44%Show info_outline
511.4Kbquestionable75102810658-2822126 info_outlinePHAGE_Entero_P4_NC_001609(7)47.81%Show info_outline
631.2Kbintact150413098441-3129676 info_outlinePHAGE_Entero_fiAA91_ss_NC_022750(30)52.07%Show info_outline
753.8Kbincomplete60544204749-4258610 info_outlinePHAGE_Entero_lambda_NC_001416(28)49.95%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGCG01000003.1| Escherichia coli strain NCTC11022 genome assembly, contig: 4266130, gc%: 50.68%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
11057..1068attL0.0Showinfo_outline
26734..7888PHAGE_Brevib_Jenst_NC_028805: putative peptidase M20; NCTC11022_00893; phage(gi971745009)2.12e-05Showinfo_outline
3complement(8008..8220)cupin superfamily protein family; NCTC11022_008940.0Showinfo_outline
4complement(8238..8795)cupin superfamily protein family; NCTC11022_008950.0Showinfo_outline
5complement(8803..9129)cupin superfamily protein family; NCTC11022_008960.0Showinfo_outline
69755..10609PHAGE_Salmon_vB_SosS_Oslo_NC_018279: integrase; NCTC11022_00897; phage(gi399528791)3.07e-42Showinfo_outline
711216..11578PHAGE_Aggreg_S1249_NC_013597: hypothetical protein; NCTC11022_00898; phage(gi100037)7.56e-08Showinfo_outline
8complement(11922..12101)Uncharacterised protein; NCTC11022_008990.0Showinfo_outline
912301..12507putative prophage protein; NCTC11022_009000.0Showinfo_outline
1012497..12739putative prophage protein; NCTC11022_009010.0Showinfo_outline
1112732..12965putative prophage protein; NCTC11022_009020.0Showinfo_outline
1212958..13191putative prophage protein; NCTC11022_009030.0Showinfo_outline
1313197..13496putative prophage protein; NCTC11022_009040.0Showinfo_outline
1413493..14908PHAGE_Mycoba_Minerva_NC_026584: helicase; NCTC11022_00905; phage(gi764159341)1.12e-30Showinfo_outline
1514942..15193putative prophage protein; NCTC11022_009060.0Showinfo_outline
1615190..15612PHAGE_Staphy_tp310_1_NC_009761: ss-DNA-binding protein; NCTC11022_00907; phage(gi156603906)4.06e-11Showinfo_outline
1715830..16870PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major capsid protein; Lambda gpE homolog; NCTC11022_00908; phage(gi169257230)7.15e-85Showinfo_outline
1816982..17218PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head decoration protein; Lambda gpD homolog; NCTC11022_00909; phage(gi169257231)1.59e-08Showinfo_outline
1917230..17613PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC11022_00910; phage(gi9627517)2.91e-06Showinfo_outline
2017814..18134PHAGE_Entero_N15_NC_001901: gp1; NCTC11022_00911; phage(gi9630465)3.08e-24Showinfo_outline
2118428..18709putative prophage protein; NCTC11022_009120.0Showinfo_outline
2233137..33148attR0.0Showinfo_outline

Region 2, total 48 CDS

#CDS PositionBLAST HitE-ValueSequence
1220743..220754attL0.0Showinfo_outline
2228599..229279PHAGE_Escher_Seurat_NC_027378: late promoter transcription; NCTC11022_01153; phage(gi100046)1.83e-07Showinfo_outline
3complement(229408..230343)C32 tRNA thiolase; NCTC11022_011540.0Showinfo_outline
4complement(230395..231630)PROPHAGE_Escher_Sakai: putative integrase; NCTC11022_01155; phage(gi15832267)1.67e-112Showinfo_outline
5complement(231632..231847)PHAGE_Escher_phi191_NC_028660: hypothetical protein; NCTC11022_01156; phage(gi966198069)8.91e-05Showinfo_outline
6complement(231947..232135)Rac prophage; predicted protein; NCTC11022_011570.0Showinfo_outline
7complement(232386..233474)PHAGE_Entero_mEp237_NC_019704: recombinase RecT; NCTC11022_01158; phage(gi435439295)8.94e-170Showinfo_outline
8complement(233489..235171)PHAGE_Entero_mEp237_NC_019704: exonuclease; NCTC11022_01159; phage(gi435439296)3.65e-153Showinfo_outline
9complement(235168..235668)PHAGE_Shigel_Stx_NC_029120: exodeoxyribonuclease VIII; NCTC11022_01160; phage(gi985761253)3.49e-55Showinfo_outline
10complement(235620..236654)PHAGE_Shigel_Stx_NC_029120: exodeoxyribonuclease VIII; NCTC11022_01161; phage(gi985761253)6.78e-87Showinfo_outline
11complement(236753..237028)putative bacteriophage protein; NCTC11022_011620.0Showinfo_outline
12complement(237103..237273)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC11022_01163; phage(gi435439297)9.09e-05Showinfo_outline
13complement(237273..237494)PHAGE_Shigel_Stx_NC_029120: Kil protein; NCTC11022_01164; phage(gi985761255)1.28e-46Showinfo_outline
14complement(237903..238055)PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; NCTC11022_01166; phage(gi472340166)1.41e-12Showinfo_outline
15complement(238361..238780)PHAGE_Entero_mEp213_NC_019720: prophage repressor; NCTC11022_01167; phage(gi428782641)2.19e-19Showinfo_outline
16238877..239119PHAGE_Entero_mEpX1_NC_019709: prophage antirepressor; NCTC11022_01168; phage(gi428781916)1.03e-24Showinfo_outline
17239116..239538PHAGE_Entero_mEp237_NC_019704: CII protein; NCTC11022_01169; phage(gi435439306)9.15e-09Showinfo_outline
18239551..239847Uncharacterised protein; NCTC11022_011700.0Showinfo_outline
19complement(239848..240099)Uncharacterised protein; NCTC11022_011710.0Showinfo_outline
20240179..241297PHAGE_Escher_TL_2011b_NC_019445: hypothetical protein; NCTC11022_01172; phage(gi418487646)6.35e-57Showinfo_outline
21241329..241751PHAGE_Entero_mEp237_NC_019704: DNA replication protein P; NCTC11022_01173; phage(gi435439308)7.96e-36Showinfo_outline
22241786..242547PHAGE_Shigel_Stx_NC_029120: hypothetical protein; NCTC11022_01174; phage(gi985761264)1.22e-70Showinfo_outline
23242563..242985PHAGE_Shigel_Stx_NC_029120: LygF; NCTC11022_01175; phage(gi985761265)2.54e-65Showinfo_outline
24242982..243236PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC11022_01176; phage(gi100096)6.70e-45Showinfo_outline
25243229..243540PHAGE_Entero_mEp213_NC_019720: hypothetical protein; NCTC11022_01177; phage(gi428782634)7.98e-22Showinfo_outline
26243846..244418PHAGE_Bacill_SageFayge_NC_031027: baseplate wedge tail fiber connector; NCTC11022_01178; phage(gi100202)1.38e-06Showinfo_outline
27complement(244384..245481)Uncharacterised protein; NCTC11022_011790.0Showinfo_outline
28246469..246681PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC11022_01181; phage(gi423262436)1.99e-05Showinfo_outline
29246753..247352PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC11022_01182; phage(gi435439315)3.17e-70Showinfo_outline
30247352..247642PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC11022_01183; phage(gi435439317)4.43e-32Showinfo_outline
31247639..248181late gene regulator; NCTC11022_011840.0Showinfo_outline
32248538..248613tRNA0.0Showinfo_outline
33248617..248691tRNA0.0Showinfo_outline
34249264..249461PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC11022_01187; phage(gi100118)1.10e-24Showinfo_outline
35249472..249690PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC11022_01188; phage(gi100118)4.45e-37Showinfo_outline
36249687..249839PHAGE_Salmon_SP_076_NC_021782: hypothetical protein; NCTC11022_01189; phage(gi525972753)3.26e-09Showinfo_outline
37249926..250318PHAGE_Entero_phiP27_NC_003356: putative holin; NCTC11022_01190; phage(gi18249892)4.86e-72Showinfo_outline
38250308..250583PHAGE_Entero_phiP27_NC_003356: putative holin; NCTC11022_01191; phage(gi18249893)1.28e-56Showinfo_outline
39250586..250963PHAGE_Entero_phiP27_NC_003356: putative endolysin; NCTC11022_01192; phage(gi18249894)3.22e-85Showinfo_outline
40250978..251160Uncharacterised protein; NCTC11022_011930.0Showinfo_outline
41251334..251441Uncharacterised protein; NCTC11022_011940.0Showinfo_outline
42251565..252356PHAGE_Lactob_phiLdb_NC_022762: putative ParB nuclease; NCTC11022_01195; phage(gi571798069)3.90e-63Showinfo_outline
43252349..253281PHAGE_Lactob_jlb1_NC_024206: hypothetical protein; NCTC11022_01196; phage(gi971848912)7.45e-76Showinfo_outline
44253259..253468Uncharacterised protein; NCTC11022_011970.0Showinfo_outline
45253472..254563PHAGE_Burkho_Bcep22_NC_005262: TerS; NCTC11022_01198; phage(gi158997725)3.80e-31Showinfo_outline
46254553..255881PHAGE_Salmon_SSU5_NC_018843: putative terminase large subunit; NCTC11022_01199; phage(gi410491412)1.18e-18Showinfo_outline
47255900..257336phage-associated protein, HI1409 family; NCTC11022_012000.0Showinfo_outline
48270661..270672attR0.0Showinfo_outline

Region 3, total 12 CDS

#CDS PositionBLAST HitE-ValueSequence
11391768..1392193PHAGE_Stx2_c_1717_NC_011357: truncated transposase; NCTC11022_02393; phage(gi209447151)1.29e-15Showinfo_outline
21392190..1392540PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC11022_02394; phage(gi209447152)2.31e-51Showinfo_outline
31392571..1394163PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC11022_02395; phage(gi209447153)0.0Showinfo_outline
4complement(1394190..1394933)putative helicase; NCTC11022_023960.0Showinfo_outline
5complement(1395302..1395628)PHAGE_Coryne_Poushou_NC_042139: membrane-associated initiation of head vertex; NCTC11022_02397; phage(gi100034)2.01e-18Showinfo_outline
61395682..1396107PHAGE_Stx2_c_1717_NC_011357: truncated transposase; NCTC11022_02398; phage(gi209447151)1.29e-15Showinfo_outline
71396104..1396454PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC11022_02399; phage(gi209447152)2.31e-51Showinfo_outline
81396485..1398077PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC11022_02400; phage(gi209447153)0.0Showinfo_outline
91398504..1398710PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC11022_02401; phage(gi9627517)1.84e-07Showinfo_outline
101398797..1399399Uncharacterised protein; NCTC11022_024020.0Showinfo_outline
11complement(1399721..1400092)CP4-57 prophage protein; NCTC11022_024030.0Showinfo_outline
12complement(1400089..1401204)CP4-57 prophage protein; NCTC11022_024040.0Showinfo_outline

Region 4, total 17 CDS

#CDS PositionBLAST HitE-ValueSequence
11675081..1675092attL0.0Showinfo_outline
21689791..1690990PHAGE_Entero_P4_NC_001609: integrase; NCTC11022_02707; phage(gi9627511)2.89e-73Showinfo_outline
3complement(1690991..1692688)ATPase involved in DNA repair; NCTC11022_027080.0Showinfo_outline
4complement(1692675..1692908)Uncharacterised protein; NCTC11022_027090.0Showinfo_outline
5complement(1692895..1693443)Uncharacterised protein; NCTC11022_027100.0Showinfo_outline
6complement(1693446..1693706)Uncharacterised protein; NCTC11022_027110.0Showinfo_outline
7complement(1694159..1694731)PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC11022_02712; phage(gi9627520)1.21e-137Showinfo_outline
8complement(1694805..1695305)PHAGE_Entero_P4_NC_001609: transactivation protein; NCTC11022_02713; phage(gi9627519)5.90e-118Showinfo_outline
9complement(1695302..1696036)PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC11022_02714; phage(gi9627518)5.15e-178Showinfo_outline
101696587..1696853PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC11022_02715; phage(gi9627517)1.12e-59Showinfo_outline
111697433..1697720PHAGE_Entero_P4_NC_001609: helper derepression protein; NCTC11022_02718; phage(gi9627515)3.40e-64Showinfo_outline
121697713..1698168PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC11022_02719; phage(gi9627514)1.03e-104Showinfo_outline
131698273..1698575PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC11022_02720; phage(gi9627513)6.43e-35Showinfo_outline
141698575..1699600PHAGE_Entero_P4_NC_001609: DNA primase; NCTC11022_02721; phage(gi9627512)3.41e-168Showinfo_outline
151699597..1699836PHAGE_Entero_P4_NC_001609: DNA primase; NCTC11022_02722; phage(gi9627512)4.64e-47Showinfo_outline
161699941..1700966PHAGE_Entero_P4_NC_001609: DNA primase; NCTC11022_02723; phage(gi9627512)0.0Showinfo_outline
171714729..1714740attR0.0Showinfo_outline

Region 5, total 12 CDS

#CDS PositionBLAST HitE-ValueSequence
12810658..2810680attL0.0Showinfo_outline
22810841..2812022PROPHAGE_Escher_CFT073: putative prophage integrase; NCTC11022_03881; phage(gi26250313)0.0Showinfo_outline
3complement(2812040..2814712)ABC-type enterochelin transport system, ATPase component; NCTC11022_038820.0Showinfo_outline
4complement(2815130..2815702)PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC11022_03883; phage(gi9627520)8.32e-126Showinfo_outline
5complement(2815717..2815962)PHAGE_Erwini_ENT90_NC_019932: transcriptional regulator; NCTC11022_03884; phage(gi431810990)1.75e-16Showinfo_outline
6complement(2815959..2816693)PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC11022_03885; phage(gi9627518)1.36e-177Showinfo_outline
72817245..2817511PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC11022_03886; phage(gi9627517)1.12e-59Showinfo_outline
82818100..2818387PHAGE_Entero_P4_NC_001609: helper derepression protein; NCTC11022_03889; phage(gi9627515)6.92e-65Showinfo_outline
92818380..2818835PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC11022_03890; phage(gi9627514)5.10e-106Showinfo_outline
102818971..2819291PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC11022_03891; phage(gi9627513)1.19e-71Showinfo_outline
112819306..2821639PHAGE_Entero_P4_NC_001609: DNA primase; NCTC11022_03892; phage(gi9627512)0.0Showinfo_outline
122822126..2822148attR0.0Showinfo_outline

Region 6, total 43 CDS

#CDS PositionBLAST HitE-ValueSequence
13098441..3098475attL0.0Showinfo_outline
2complement(3098602..3099582)PHAGE_Entero_fiAA91_ss_NC_022750: integrase; NCTC11022_04177; phage(gi557307610)0.0Showinfo_outline
3complement(3099652..3099945)PHAGE_Entero_fiAA91_ss_NC_022750: immunity repressor; NCTC11022_04178; phage(gi557307611)8.00e-67Showinfo_outline
43100098..3100370PHAGE_Entero_WPhi_NC_005056: Cox; NCTC11022_04179; phage(gi33438929)1.77e-60Showinfo_outline
53100540..3101040PHAGE_Entero_fiAA91_ss_NC_022750: DNA replication protein; NCTC11022_04180; phage(gi557307614)2.21e-121Showinfo_outline
63101104..3101328PHAGE_Entero_fiAA91_ss_NC_022750: hypothetical protein; NCTC11022_04181; phage(gi557307617)7.05e-48Showinfo_outline
73101328..3101627PHAGE_Yersin_L_413C_NC_004745: hypothetical protein; NCTC11022_04182; phage(gi30065739)1.22e-64Showinfo_outline
83101630..3101854PHAGE_Entero_fiAA91_ss_NC_022750: zinc finger protein; NCTC11022_04183; phage(gi557307615)1.13e-47Showinfo_outline
93101851..3102126PHAGE_Entero_fiAA91_ss_NC_022750: replication initiation protein; NCTC11022_04184; phage(gi557307618)1.75e-62Showinfo_outline
103102116..3104392PHAGE_Entero_fiAA91_ss_NC_022750: DNA replication; NCTC11022_04185; phage(gi557307619)0.0Showinfo_outline
113104571..3105122PHAGE_Salmon_118970_sal3_NC_031940: baseplate hub subunit; NCTC11022_04186; phage(gi100107)7.03e-43Showinfo_outline
123105216..3105485Uncharacterised protein; NCTC11022_041870.0Showinfo_outline
133106115..3106774Uncharacterised protein; NCTC11022_041880.0Showinfo_outline
14complement(3107129..3108163)PHAGE_Entero_fiAA91_ss_NC_022750: capsid portal protein; NCTC11022_04189; phage(gi557307585)0.0Showinfo_outline
15complement(3108163..3109935)PHAGE_Entero_fiAA91_ss_NC_022750: large terminase subunit; NCTC11022_04190; phage(gi557307593)0.0Showinfo_outline
163110109..3110963PHAGE_Entero_fiAA91_ss_NC_022750: capsid scaffold; NCTC11022_04191; phage(gi557307586)0.0Showinfo_outline
173111022..3112095PHAGE_Entero_fiAA91_ss_NC_022750: major capsid protein precursor; NCTC11022_04192; phage(gi557307587)0.0Showinfo_outline
183112099..3112842PHAGE_Entero_fiAA91_ss_NC_022750: small terminase subunit; NCTC11022_04193; phage(gi557307590)5.91e-175Showinfo_outline
193112942..3113451PHAGE_Entero_fiAA91_ss_NC_022750: capsid completion protein; NCTC11022_04194; phage(gi557307591)9.52e-120Showinfo_outline
203113451..3113654PHAGE_Entero_fiAA91_ss_NC_022750: tail protein; NCTC11022_04195; phage(gi557307592)2.79e-42Showinfo_outline
213113658..3113939PHAGE_Entero_fiAA91_ss_NC_022750: holin; NCTC11022_04196; phage(gi557307594)5.16e-57Showinfo_outline
223113939..3114436PHAGE_Entero_fiAA91_ss_NC_022750: lysozyme; NCTC11022_04197; phage(gi557307624)4.90e-121Showinfo_outline
233114451..3114876PHAGE_Entero_fiAA91_ss_NC_022750: lysin; NCTC11022_04198; phage(gi557307595)1.29e-92Showinfo_outline
243114864..3115289PHAGE_Entero_fiAA91_ss_NC_022750: lysin; NCTC11022_04199; phage(gi557307623)8.78e-95Showinfo_outline
253115276..3115434PHAGE_Escher_P2_NC_041848: hypothetical protein; NCTC11022_04200; phage(gi100027)8.81e-32Showinfo_outline
263115397..3115864PHAGE_Entero_fiAA91_ss_NC_022750: tail completion protein; NCTC11022_04201; phage(gi557307596)7.15e-107Showinfo_outline
273115857..3116309PHAGE_Entero_fiAA91_ss_NC_022750: tail completion protein; NCTC11022_04202; phage(gi557307589)3.17e-105Showinfo_outline
283116376..3117011PHAGE_Entero_fiAA91_ss_NC_022750: baseplate protein; NCTC11022_04203; phage(gi557307597)2.15e-152Showinfo_outline
293117008..3117355PHAGE_Entero_fiAA91_ss_NC_022750: putative baseplate protein; NCTC11022_04204; phage(gi557307598)7.79e-80Showinfo_outline
303117418..3118269PHAGE_Entero_fiAA91_ss_NC_022750: baseplate assembly; NCTC11022_04205; phage(gi557307588)0.0Showinfo_outline
313118266..3118793PHAGE_Entero_fiAA91_ss_NC_022750: baseplate assembly; NCTC11022_04206; phage(gi557307599)3.93e-108Showinfo_outline
323118804..3121098PHAGE_Entero_fiAA91_ss_NC_022750: tail fiber; NCTC11022_04207; phage(gi557307600)0.0Showinfo_outline
333121102..3121629PHAGE_Escher_pro147_NC_028896: tail fibers protein; NCTC11022_04208; phage(gi971753728)1.62e-117Showinfo_outline
34complement(3121781..3122560)PHAGE_Yersin_L_413C_NC_004745: hypothetical protein; NCTC11022_04209; phage(gi30065724)0.0Showinfo_outline
35complement(3122557..3122715)Uncharacterised protein; NCTC11022_042100.0Showinfo_outline
363122961..3124151PHAGE_Entero_fiAA91_ss_NC_022750: major tail sheath; NCTC11022_04211; phage(gi557307603)0.0Showinfo_outline
373124164..3124682PHAGE_Entero_fiAA91_ss_NC_022750: major tail tube; NCTC11022_04212; phage(gi557307604)1.05e-124Showinfo_outline
383124739..3125014PHAGE_Entero_fiAA91_ss_NC_022750: tail protein; NCTC11022_04213; phage(gi557307605)6.72e-55Showinfo_outline
393125159..3127147PHAGE_Entero_fiAA91_ss_NC_022750: tail length determinator; NCTC11022_04214; phage(gi557307606)0.0Showinfo_outline
403127101..3127607PHAGE_Entero_fiAA91_ss_NC_022750: tail length determinator; NCTC11022_04215; phage(gi557307606)2.73e-103Showinfo_outline
413127622..3128101PHAGE_Escher_pro147_NC_028896: tail protein; NCTC11022_04216; phage(gi971753720)1.95e-111Showinfo_outline
423128101..3129264PHAGE_Entero_fiAA91_ss_NC_022750: putative phage control protein D; NCTC11022_04217; phage(gi557307608)0.0Showinfo_outline
433129676..3129710attR0.0Showinfo_outline

Region 7, total 56 CDS

#CDS PositionBLAST HitE-ValueSequence
14204749..4204762attL0.0Showinfo_outline
2complement(4212566..4213729)PHAGE_Shigel_Stx_NC_029120: integrase; NCTC11022_05285; phage(gi985761248)0.0Showinfo_outline
3complement(4213928..4214206)PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC11022_05286; phage(gi849250253)1.41e-62Showinfo_outline
4complement(4214254..4214472)PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC11022_05287; phage(gi849250254)3.75e-47Showinfo_outline
5complement(4214571..4214786)PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC11022_05288; phage(gi100017)1.10e-46Showinfo_outline
6complement(4214863..4215054)PHAGE_Escher_PA28_NC_041935: exonuclease A; NCTC11022_05289; phage(gi100018)2.77e-38Showinfo_outline
7complement(4215027..4215209)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC11022_05290; phage(gi100011)4.01e-37Showinfo_outline
8complement(4215206..4215886)PHAGE_Entero_YYZ_2008_NC_011356: putative exonuclease; NCTC11022_05291; phage(gi209427739)3.43e-170Showinfo_outline
9complement(4215883..4216668)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC11022_05292; phage(gi100013)0.0Showinfo_outline
10complement(4216674..4216970)PHAGE_Escher_PA28_NC_041935: DNA helicase; NCTC11022_05293; phage(gi100021)1.07e-64Showinfo_outline
11complement(4217047..4217337)PHAGE_Entero_HK225_NC_019717: Kil protein; NCTC11022_05294; phage(gi428782413)1.59e-36Showinfo_outline
12complement(4218241..4218828)HTH-type transcriptional regulator ygiT; NCTC11022_052950.0Showinfo_outline
13complement(4219384..4219869)PHAGE_Salmon_BTP1_NC_042346: RegA; NCTC11022_05296; phage(gi100039)4.67e-96Showinfo_outline
144220207..4220434PHAGE_Salmon_BTP1_NC_042346: clamp-loader subunit; NCTC11022_05297; phage(gi100040)5.69e-31Showinfo_outline
154220465..4221004PHAGE_Entero_phi80_NC_021190: CII decision making protein; NCTC11022_05298; phage(gi824479625)1.44e-85Showinfo_outline
164221016..4222020PHAGE_Entero_DE3_NC_042057: DCTP pyrophosphatase; NCTC11022_05299; phage(gi100024)2.38e-141Showinfo_outline
174222017..4222718PHAGE_Entero_DE3_NC_042057: DNA primase subunit; NCTC11022_05300; phage(gi100025)1.97e-167Showinfo_outline
184222715..4223017PHAGE_Escher_PA28_NC_041935: replication and recombination DNA helicase; NCTC11022_05301; phage(gi100033)3.67e-59Showinfo_outline
194223085..4223417PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; NCTC11022_05302; phage(gi311992758)3.49e-10Showinfo_outline
204223674..4225200PHAGE_Burkho_Bcep176_NC_007497: gp53; DLP12; phage prophage; NCTC11022_05303(gi77864678)3.18e-37Showinfo_outline
214225312..4225635PHAGE_Haemop_Aaphi23_NC_004827: putative antirepressor protein Ant; NCTC11022_05304; phage(gi31544021)5.19e-07Showinfo_outline
224226097..4226453Uncharacterised protein; NCTC11022_053050.0Showinfo_outline
234226641..4227096PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; DNA; phage base-flipping protein; NCTC11022_05306(gi401817579)3.95e-80Showinfo_outline
244227096..4227266PHAGE_Escher_HK639_NC_016158: NinE; NCTC11022_05307; phage(gi356870663)6.77e-20Showinfo_outline
254227259..4227549PHAGE_Salmon_118970_sal4_NC_030919: replication and recombination DNA helicase; NCTC11022_05308; phage(gi100033)7.15e-42Showinfo_outline
264227546..4227908PHAGE_Salmon_118970_sal4_NC_030919: membrane-associated initiation of head vertex; NCTC11022_05309; phage(gi100034)5.08e-38Showinfo_outline
274228131..4228514PHAGE_Shigel_Stx_NC_029120: antitermination protein Q; NCTC11022_05310; phage(gi985761278)3.75e-71Showinfo_outline
28complement(4228704..4229801)outer membrane porin; DLP12 prophage; NCTC11022_053110.0Showinfo_outline
294230390..4230605PHAGE_Entero_VT2phi_272_NC_028656: holin; NCTC11022_05312; phage(gi966197762)5.28e-37Showinfo_outline
304230605..4231102PHAGE_Entero_SfI_NC_027339: lysozyme; NCTC11022_05313; phage(gi849250312)1.02e-116Showinfo_outline
314231099..4231560PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC11022_05314; phage(gi100031)9.15e-106Showinfo_outline
32complement(4231592..4231885)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC11022_05315; phage(gi100032)1.28e-54Showinfo_outline
334232831..4233376PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC11022_05316; phage(gi100035)1.46e-128Showinfo_outline
344233351..4235276PHAGE_Entero_DE3_NC_042057: DNA polymerase; NCTC11022_05317; phage(gi100036)0.0Showinfo_outline
354235273..4235479PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC11022_05318; phage(gi100037)4.55e-43Showinfo_outline
364235476..4237077PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC11022_05319; phage(gi100038)0.0Showinfo_outline
374237058..4238377PHAGE_Entero_DE3_NC_042057: RegA; NCTC11022_05320; phage(gi100039)0.0Showinfo_outline
384238387..4238719PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC11022_05321; phage(gi100040)2.64e-73Showinfo_outline
394238775..4239800PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC11022_05322; phage(gi100041)0.0Showinfo_outline
404239842..4240237PHAGE_Entero_DE3_NC_042057: sliding clamp DNA polymerase; NCTC11022_05323; phage(gi100042)4.36e-74Showinfo_outline
414240249..4240602PHAGE_Entero_DE3_NC_042057: RNA polymerase binding protein; NCTC11022_05324; phage(gi100043)6.07e-76Showinfo_outline
424240614..4241192PHAGE_Entero_DE3_NC_042057: ssDNA binding protein; NCTC11022_05325; phage(gi100044)6.54e-131Showinfo_outline
434241189..4241584PHAGE_Entero_DE3_NC_042057: loader of DNA helicase; NCTC11022_05326; phage(gi100045)5.65e-90Showinfo_outline
444241592..4242332PHAGE_Entero_DE3_NC_042057: late promoter transcription; NCTC11022_05327; phage(gi100046)3.21e-173Showinfo_outline
454242348..4242770PHAGE_Entero_DE3_NC_042057: dsDNA binding protein; NCTC11022_05328; phage(gi100047)2.23e-99Showinfo_outline
464242752..4243186PHAGE_Entero_DE3_NC_042057: rnaseH; NCTC11022_05329; phage(gi100048)1.06e-101Showinfo_outline
474243179..4245740PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC11022_05330; phage(gi100049)0.0Showinfo_outline
484245737..4246066PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC11022_05331; phage(gi100050)5.12e-76Showinfo_outline
494246066..4246764PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC11022_05332; phage(gi100051)8.63e-171Showinfo_outline
504246914..4247513PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC11022_05333; phage(gi100052)4.03e-142Showinfo_outline
514247510..4248082PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC11022_05334; phage(gi100053)2.81e-131Showinfo_outline
524248143..4251640PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC11022_05335; phage(gi100054)0.0Showinfo_outline
534251711..4252310PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; NCTC11022_05336; phage(gi148609401)2.13e-141Showinfo_outline
54complement(4252872..4253609)PHAGE_Entero_lambda_NC_001416: hypothetical protein; NCTC11022_05337; phage(gi9626267)4.83e-17Showinfo_outline
554253740..4255773PHAGE_Entero_9g_NC_024146: side tail fiber; NCTC11022_05338; phage(gi640885143)0.0Showinfo_outline
564258610..4258623attR0.0Showinfo_outline
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 4266130 bps
Phages: 7
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

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