Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGDH01000001.1

GenInfo (GI) Number: 0000000000

Download Results: UGDH01000001.1.PHASTER.zip

gi|00000000|ref|UGDH01000001.1| Escherichia coli strain NCTC9091 genome assembly, contig: 5013937, gc%: 50.66%

Download summary as .txt file: summary.txt file_download

Total: 5 prophage regions have been identified, of which 2 regions are intact, 3 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
116Kbincomplete30172378025-2394122 info_outlinePHAGE_Entero_YYZ_2008_NC_011356(2)46.17%Show info_outline
240.1Kbincomplete60432391509-2431681 info_outlinePHAGE_Entero_DE3_NC_042057(21)51.20%Show info_outline
360.2Kbintact110582723554-2783850 info_outlinePHAGE_Entero_DE3_NC_042057(17)50.18%Show info_outline
419Kbincomplete30123769051-3788148 info_outlinePHAGE_Entero_P4_NC_001609(5)48.26%Show info_outline
553.2Kbintact150553788312-3841581 info_outlinePHAGE_Shigel_SfIV_NC_022749(35)49.66%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGDH01000001.1| Escherichia coli strain NCTC9091 genome assembly, contig: 5013937, gc%: 50.66%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 19 CDS

#CDS PositionBLAST HitE-ValueSequence
12378025..2379044PHAGE_Synech_S_SM2_NC_015279: zinc-containing alcohol dehydrogenase superfamily protein; NCTC9091_02307; phage(gi326781942)2.21e-18Showinfo_outline
22379005..2379017attL0.0Showinfo_outline
32379102..2379230protein, truncated; NCTC9091_023080.0Showinfo_outline
4complement(2379232..2380512)PHAGE_Entero_YYZ_2008_NC_011356: putative integrase; Qin; phage prophage; NCTC9091_02309(gi209427727)0.0Showinfo_outline
5complement(2380547..2380783)PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage excisionase; NCTC9091_02310; phage(gi169257269)1.10e-20Showinfo_outline
6complement(2380871..2383342)PHAGE_Salmon_118970_sal3_NC_031940: baseplate hub subunit; NCTC9091_02311; phage(gi100107)2.86e-69Showinfo_outline
7complement(2383436..2383627)putative prophage protein; NCTC9091_023120.0Showinfo_outline
8complement(2383624..2383812)division inhibition protein; NCTC9091_023130.0Showinfo_outline
92384212..2384376Uncharacterised protein; NCTC9091_023150.0Showinfo_outline
10complement(2384380..2384598)putative prophage protein; NCTC9091_023160.0Showinfo_outline
11complement(2384628..2384756)PHAGE_Entero_vB_EcoP_ACG_C91_NC_019403: hypothetical protein; NCTC9091_02317; phage(gi414087578)9.88e-05Showinfo_outline
12complement(2384758..2384913)PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; NCTC9091_02318; phage(gi472340166)5.27e-12Showinfo_outline
13complement(2385082..2385489)PHAGE_Entero_IME10_NC_019501: repressor protein; NCTC9091_02319; phage(gi422934295)3.37e-20Showinfo_outline
142385570..2385797PHAGE_Pectob_ZF40_NC_019522: putative cro anti-repressor; NCTC9091_02320; phage(gi422936651)2.62e-12Showinfo_outline
152385781..2386302YdfX; NCTC9091_023210.0Showinfo_outline
162386283..2387248PHAGE_Shigel_SfIV_NC_022749: replication protein; NCTC9091_02322; phage(gi557307567)1.76e-68Showinfo_outline
172387289..2387711PHAGE_Shigel_Stx_NC_029120: LygF; NCTC9091_02323; phage(gi985761265)1.71e-61Showinfo_outline
182387708..2388064PHAGE_Pectob_ZF40_NC_019522: putative methylase; NCTC9091_02324; phage(gi422936660)5.18e-51Showinfo_outline
192394122..2394134attR0.0Showinfo_outline

Region 2, total 43 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(2391509..2391841)Qin prophage protein; NCTC9091_023290.0Showinfo_outline
22392374..2392613antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor of relBEF; NCTC9091_023300.0Showinfo_outline
32392613..2392900toxin of the RelE-RelB toxin-antitoxin system; NCTC9091_023310.0Showinfo_outline
42392972..2393127PHAGE_Entero_933W_NC_000924: host killer protein; NCTC9091_02332; phage(gi9632541)1.17e-25Showinfo_outline
52393344..2393595putative prophage protein; NCTC9091_023330.0Showinfo_outline
62393942..2394991PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9091_02334; phage(gi428782365)2.80e-140Showinfo_outline
72395005..2395757PHAGE_Entero_SfV_NC_003444: antitermination protein Q; NCTC9091_02335; phage(gi19549033)3.43e-178Showinfo_outline
8complement(2396179..2396391)cold shock-like protein CspF; NCTC9091_023360.0Showinfo_outline
9complement(2397510..2397629)Uncharacterised protein; NCTC9091_023380.0Showinfo_outline
102397671..2397877PHAGE_Entero_mEp460_NC_019716: porin; NCTC9091_02339; phage(gi428782370)2.64e-40Showinfo_outline
112397882..2398193PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9091_02340; phage(gi428782371)5.32e-40Showinfo_outline
122398190..2398723PHAGE_Entero_mEp460_NC_019716: endolysin; NCTC9091_02341; phage(gi428782372)1.35e-121Showinfo_outline
132398720..2399217PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; NCTC9091_02342; phage(gi16765210)1.80e-62Showinfo_outline
14complement(2400791..2401201)PHAGE_Entero_DE3_NC_042057: replication and recombination DNA helicase; NCTC9091_02344; phage(gi100033)1.04e-75Showinfo_outline
152401881..2402426PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC9091_02345; phage(gi100035)1.46e-128Showinfo_outline
162402401..2404326PHAGE_Entero_DE3_NC_042057: DNA polymerase; NCTC9091_02346; phage(gi100036)0.0Showinfo_outline
172404323..2404529PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9091_02347; phage(gi100037)4.55e-43Showinfo_outline
182404526..2406127PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9091_02348; phage(gi100038)0.0Showinfo_outline
192406108..2407427PHAGE_Entero_DE3_NC_042057: RegA; NCTC9091_02349; phage(gi100039)0.0Showinfo_outline
202407437..2407769PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9091_02350; phage(gi100040)1.14e-71Showinfo_outline
212407825..2408850PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9091_02351; phage(gi100041)0.0Showinfo_outline
222408892..2409287PHAGE_Entero_DE3_NC_042057: sliding clamp DNA polymerase; NCTC9091_02352; phage(gi100042)4.36e-74Showinfo_outline
232409299..2409652PHAGE_Entero_DE3_NC_042057: RNA polymerase binding protein; NCTC9091_02353; phage(gi100043)6.42e-77Showinfo_outline
242409664..2410242PHAGE_Entero_DE3_NC_042057: ssDNA binding protein; NCTC9091_02354; phage(gi100044)9.38e-131Showinfo_outline
252410239..2410634PHAGE_Entero_DE3_NC_042057: loader of DNA helicase; NCTC9091_02355; phage(gi100045)6.43e-91Showinfo_outline
262410642..2411382PHAGE_Entero_DE3_NC_042057: late promoter transcription; NCTC9091_02356; phage(gi100046)7.70e-171Showinfo_outline
272411398..2411820PHAGE_Entero_DE3_NC_042057: dsDNA binding protein; NCTC9091_02357; phage(gi100047)3.20e-98Showinfo_outline
282411802..2412236PHAGE_Entero_DE3_NC_042057: rnaseH; NCTC9091_02358; phage(gi100048)1.06e-101Showinfo_outline
292412229..2414808PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC9091_02359; phage(gi100049)0.0Showinfo_outline
302414805..2415134PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9091_02360; phage(gi100050)1.42e-71Showinfo_outline
312415134..2415832PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9091_02361; phage(gi100051)1.39e-171Showinfo_outline
322415838..2416581PHAGE_Entero_mEp460_NC_019716: tail fiber component; NCTC9091_02362; phage(gi428782332)0.0Showinfo_outline
332416578..2417150PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9091_02363; phage(gi100053)2.81e-131Showinfo_outline
342417211..2420690PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC9091_02364; phage(gi100054)0.0Showinfo_outline
352420758..2421357PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; NCTC9091_02365; phage(gi148609401)2.01e-134Showinfo_outline
362421422..2424382PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9091_02366; phage(gi100056)5.22e-103Showinfo_outline
37complement(2424985..2425575)PHAGE_Entero_Mu_NC_000929: Gin; NCTC9091_02368; phage(gi9633542)1.35e-29Showinfo_outline
38complement(2425892..2426125)PHAGE_Salmon_118970_sal3_NC_031940: replication and recombination DNA helicase; NCTC9091_02369; phage(gi100033)1.44e-44Showinfo_outline
392426911..2428194PHAGE_Burkho_phi1026b_NC_005284: gp59; NCTC9091_02370; phage(gi38707949)7.81e-28Showinfo_outline
402428283..2429743putative sugar dehydrogenase; NCTC9091_023710.0Showinfo_outline
41complement(2429779..2429982)PHAGE_Salmon_SSU5_NC_018843: putative selenium-binding protein YdfZ; NCTC9091_02372; phage(gi410491512)4.86e-18Showinfo_outline
42complement(2430160..2430846)GntR family transcriptional regulator; NCTC9091_023730.0Showinfo_outline
43complement(2430935..2431681)PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; NCTC9091_02374; phage(gi971760361)8.52e-10Showinfo_outline

Region 3, total 65 CDS

#CDS PositionBLAST HitE-ValueSequence
12723554..2723565attL0.0Showinfo_outline
22725276..2725295attL0.0Showinfo_outline
3complement(2727625..2730639)PROPHAGE_Escher_MG1655: Qin prophage; predicted side tail fibre assembly protein; NCTC9091_02641; phage(gi16129506)6.44e-143Showinfo_outline
4complement(2730791..2731390)PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; NCTC9091_02642; phage(gi148609401)2.91e-124Showinfo_outline
5complement(2731458..2734937)PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC9091_02643; phage(gi100054)0.0Showinfo_outline
6complement(2735004..2735258)Uncharacterised protein; NCTC9091_026440.0Showinfo_outline
7complement(2735415..2735957)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9091_02645; phage(gi100053)5.44e-96Showinfo_outline
8complement(2735954..2736697)PHAGE_Entero_mEp460_NC_019716: tail fiber component; NCTC9091_02646; phage(gi428782332)7.32e-176Showinfo_outline
9complement(2736702..2737400)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9091_02647; phage(gi100051)7.09e-171Showinfo_outline
10complement(2737400..2737729)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9091_02648; phage(gi100050)3.85e-75Showinfo_outline
11complement(2737729..2740299)PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC9091_02649; phage(gi100049)0.0Showinfo_outline
12complement(2740280..2740693)PHAGE_Entero_DE3_NC_042057: rnaseH; NCTC9091_02650; phage(gi100048)3.60e-59Showinfo_outline
13complement(2740720..2741151)PHAGE_Entero_DE3_NC_042057: dsDNA binding protein; NCTC9091_02651; phage(gi100047)4.13e-59Showinfo_outline
14complement(2741165..2741917)PHAGE_Entero_DE3_NC_042057: late promoter transcription; NCTC9091_02652; phage(gi100046)1.20e-139Showinfo_outline
15complement(2741925..2742320)PHAGE_Entero_DE3_NC_042057: loader of DNA helicase; NCTC9091_02653; phage(gi100045)2.21e-73Showinfo_outline
16complement(2742317..2742892)PHAGE_Entero_DE3_NC_042057: ssDNA binding protein; NCTC9091_02654; phage(gi100044)3.79e-64Showinfo_outline
17complement(2742908..2743261)PHAGE_Entero_DE3_NC_042057: RNA polymerase binding protein; NCTC9091_02655; phage(gi100043)1.88e-52Showinfo_outline
18complement(2743254..2743637)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage accessory DNA packaging protein; Lambda FI homolog; NCTC9091_02656; phage(gi169257229)3.27e-08Showinfo_outline
19complement(2743689..2744717)PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9091_02657; phage(gi100041)7.39e-150Showinfo_outline
20complement(2744775..2745122)PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9091_02658; phage(gi100040)4.12e-29Showinfo_outline
21complement(2745159..2746664)PHAGE_Entero_DE3_NC_042057: RegA; NCTC9091_02659; phage(gi100039)1.80e-134Showinfo_outline
22complement(2746654..2748246)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9091_02660; phage(gi100038)0.0Showinfo_outline
23complement(2748243..2748449)PHAGE_Entero_HK225_NC_019717: head-tail connector gpW; NCTC9091_02661; phage(gi428782379)1.09e-17Showinfo_outline
24complement(2748433..2750361)PHAGE_Entero_DE3_NC_042057: DNA polymerase; terminase; phage large subunit; NCTC9091_02662(gi100036)0.0Showinfo_outline
25complement(2750333..2750881)PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC9091_02663; phage(gi100035)7.70e-64Showinfo_outline
26complement(2751595..2751735)Uncharacterised protein; NCTC9091_026640.0Showinfo_outline
27complement(2752086..2752553)PHAGE_Escher_TL_2011c_NC_019442: hypothetical protein; NCTC9091_02665; phage(gi418487099)1.60e-93Showinfo_outline
28complement(2752852..2753385)PHAGE_Entero_BP_4795_NC_004813: putative R protein; Qin; phage prophage; NCTC9091_02666(gi157166033)8.42e-123Showinfo_outline
292753491..2753763ybl58; NCTC9091_026670.0Showinfo_outline
30complement(2753729..2754073)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9091_02668; phage(gi428782371)1.14e-51Showinfo_outline
31complement(2754078..2754293)PHAGE_Shigel_Ss_VASD_NC_028685: holin lysis protein S; NCTC9091_02669; phage(gi966200466)1.22e-45Showinfo_outline
32complement(2754444..2756297)PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9091_02670; phage(gi100055)0.0Showinfo_outline
33complement(2757273..2757349)tRNA0.0Showinfo_outline
34complement(2757363..2757439)tRNA0.0Showinfo_outline
35complement(2757447..2757522)tRNA0.0Showinfo_outline
36complement(2757572..2758621)PHAGE_Entero_phiP27_NC_003356: putative DNA methylase; NCTC9091_02676; phage(gi18249888)0.0Showinfo_outline
37complement(2758772..2758969)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC9091_02677; phage(gi18249887)6.50e-42Showinfo_outline
38complement(2759196..2760017)PHAGE_Entero_HK225_NC_019717: late gene regulator Q; NCTC9091_02678; phage(gi428782441)1.44e-116Showinfo_outline
39complement(2760014..2760394)PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; NCTC9091_02679; phage(gi985761276)7.05e-47Showinfo_outline
40complement(2760395..2761450)PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC9091_02680; phage(gi557307571)8.99e-111Showinfo_outline
41complement(2761921..2763129)PROPHAGE_Escher_CFT073: transposase; NCTC9091_02681; phage(gi26246249)0.0Showinfo_outline
42complement(2763608..2764273)putative prophage protein; NCTC9091_026830.0Showinfo_outline
43complement(2764448..2764873)PHAGE_Shigel_Stx_NC_029120: LygF; NCTC9091_02684; phage(gi985761265)1.52e-64Showinfo_outline
44complement(2764889..2765659)PHAGE_Shigel_Stx_NC_029120: hypothetical protein; NCTC9091_02685; phage(gi985761264)1.78e-92Showinfo_outline
45complement(2765681..2766427)PHAGE_Shigel_POCJ13_NC_025434: DNA replication protein; NCTC9091_02686; phage(gi725949718)7.73e-151Showinfo_outline
46complement(2766434..2767396)PHAGE_Shigel_SfIV_NC_022749: replication protein; NCTC9091_02687; phage(gi557307567)5.98e-126Showinfo_outline
47complement(2767419..2767844)PHAGE_Entero_mEp237_NC_019704: CII protein; NCTC9091_02688; phage(gi435439306)5.09e-06Showinfo_outline
48complement(2767828..2768109)PHAGE_Entero_c_1_NC_019706: prophage antirepressor; NCTC9091_02689; phage(gi428781783)5.92e-33Showinfo_outline
492768210..2768629PHAGE_Entero_c_1_NC_019706: prophage repressor; NCTC9091_02690; phage(gi428781782)6.65e-32Showinfo_outline
502768814..2769050PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; NCTC9091_02691; phage(gi472340166)1.51e-11Showinfo_outline
512769052..2769180putative prophage protein; NCTC9091_026920.0Showinfo_outline
522769210..2769428putative prophage protein; NCTC9091_026930.0Showinfo_outline
53complement(2769432..2769596)Uncharacterised protein; NCTC9091_026940.0Showinfo_outline
542769997..2770185division inhibition protein dicB; NCTC9091_026960.0Showinfo_outline
552770182..2770373putative prophage protein; NCTC9091_026970.0Showinfo_outline
562770467..2772908PHAGE_Shigel_Stx_NC_029120: exodeoxyribonuclease VIII; NCTC9091_02698; phage(gi985761253)9.56e-155Showinfo_outline
572773199..2774329PHAGE_Entero_HK022_NC_002166: integrase; NCTC9091_02699; phage(gi9634144)4.75e-68Showinfo_outline
582774373..2774392attR0.0Showinfo_outline
59complement(2774375..2775013)outer membrane protein W; NCTC9091_027000.0Showinfo_outline
602775370..2776113membrane protein YciC; NCTC9091_027010.0Showinfo_outline
612776143..2776682putative intracellular septation protein; NCTC9091_027020.0Showinfo_outline
622776787..2777185putative acyl-coA thioester hydrolase; NCTC9091_027030.0Showinfo_outline
63complement(2777225..2777980)transport protein TonB; NCTC9091_027040.0Showinfo_outline
642778035..2779555PHAGE_Entero_phiFL1A_NC_013646: integrase; NCTC9091_02705; phage(gi281416324)3.71e-10Showinfo_outline
652783850..2783861attR0.0Showinfo_outline

Region 4, total 14 CDS

#CDS PositionBLAST HitE-ValueSequence
13769051..3769062attL0.0Showinfo_outline
2complement(3779520..3779792)PHAGE_Entero_186_NC_001317: B protein; NCTC9091_03647; phage(gi9634083)1.82e-12Showinfo_outline
3complement(3779798..3780349)PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC9091_03648; phage(gi9627520)2.41e-10Showinfo_outline
4complement(3780346..3781089)PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC9091_03649; phage(gi9627518)3.02e-07Showinfo_outline
5complement(3781490..3784162)PHAGE_Entero_P4_NC_001609: DNA primase; NCTC9091_03650; phage(gi9627512)1.11e-43Showinfo_outline
6complement(3784159..3784542)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC9091_03651; phage(gi9627513)6.48e-11Showinfo_outline
7complement(3784539..3784823)Uncharacterised protein; NCTC9091_036520.0Showinfo_outline
8complement(3784855..3785214)Uncharacterised protein; NCTC9091_036530.0Showinfo_outline
9complement(3785207..3785383)PHAGE_Entero_P4_NC_001609: putative CI repressor; NCTC9091_03654; phage(gi9627516)5.54e-09Showinfo_outline
103785515..3785688phage protein; NCTC9091_036550.0Showinfo_outline
11complement(3785721..3786011)PHAGE_Salmon_vB_SemP_Emek_NC_018275: hypothetical protein; NCTC9091_03656; phage(gi399498818)1.94e-08Showinfo_outline
12complement(3786137..3786961)Uncharacterised protein; NCTC9091_036570.0Showinfo_outline
133786651..3786662attR0.0Showinfo_outline
14complement(3786958..3788148)PROPHAGE_Escher_Sakai: putative integrase; NCTC9091_03658; phage(gi15833788)0.0Showinfo_outline

Region 5, total 60 CDS

#CDS PositionBLAST HitE-ValueSequence
13788312..3788358attL0.0Showinfo_outline
2complement(3792677..3793015)PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; NCTC9091_03662; phage(gi169936026)3.39e-48Showinfo_outline
33793045..3793575PHAGE_Escher_pro483_NC_028943: tail fiber protein; NCTC9091_03663; phage(gi971758534)3.06e-122Showinfo_outline
43793575..3794177PHAGE_Escher_pro483_NC_028943: putative tail fiber assembly protein; NCTC9091_03664; phage(gi971758533)3.48e-138Showinfo_outline
5complement(3794149..3794592)PHAGE_Escher_pro483_NC_028943: tail fiber assembly protein; NCTC9091_03665; phage(gi971758532)3.05e-46Showinfo_outline
6complement(3794595..3795338)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03666; phage(gi19548989)1.57e-70Showinfo_outline
7complement(3795342..3795926)PHAGE_Entero_SfV_NC_003444: tail protein; NCTC9091_03667; phage(gi19548988)3.29e-142Showinfo_outline
8complement(3795917..3796975)PHAGE_Entero_SfV_NC_003444: tail protein; NCTC9091_03668; phage(gi19549009)0.0Showinfo_outline
9complement(3796962..3797387)PHAGE_Entero_SfV_NC_003444: tail protein; NCTC9091_03669; phage(gi19549008)1.54e-98Showinfo_outline
10complement(3797387..3797935)PHAGE_Entero_SfV_NC_003444: tail protein; NCTC9091_03670; phage(gi19549007)1.05e-127Showinfo_outline
11complement(3797935..3799014)PHAGE_Entero_SfV_NC_003444: tail protein; NCTC9091_03671; phage(gi19549006)0.0Showinfo_outline
12complement(3799011..3800387)PHAGE_Entero_SfV_NC_003444: tail/DNA circulation protein; NCTC9091_03672; phage(gi19549005)0.0Showinfo_outline
13complement(3800412..3802319)PHAGE_Shigel_SfIV_NC_022749: tail tape measure protein; NCTC9091_03673; phage(gi557307539)0.0Showinfo_outline
14complement(3802404..3802727)PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC9091_03674; phage(gi557307538)1.16e-72Showinfo_outline
15complement(3802724..3803080)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03675; phage(gi19549002)2.66e-84Showinfo_outline
16complement(3803080..3804576)PHAGE_Entero_SfV_NC_003444: tail sheath protein; NCTC9091_03676; phage(gi19549001)0.0Showinfo_outline
17complement(3804560..3804730)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03677; phage(gi19549000)6.06e-33Showinfo_outline
18complement(3804739..3805299)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03678; phage(gi19548999)2.02e-134Showinfo_outline
19complement(3805296..3805802)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03679; phage(gi19548998)5.19e-108Showinfo_outline
20complement(3805777..3806187)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03680; phage(gi19548997)6.17e-63Showinfo_outline
21complement(3806184..3806507)PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; NCTC9091_03681; phage(gi526244642)4.93e-71Showinfo_outline
22complement(3806510..3806710)PHAGE_Shigel_SfII_NC_021857: hypothetical protein; NCTC9091_03682; phage(gi526244694)4.33e-39Showinfo_outline
23complement(3806760..3807965)PHAGE_Entero_SfI_NC_027339: phage major capsid protein; NCTC9091_03683; phage(gi849250290)0.0Showinfo_outline
24complement(3807980..3808630)PHAGE_Entero_SfI_NC_027339: putative phage pro-head protease; NCTC9091_03684; phage(gi849250289)1.77e-155Showinfo_outline
25complement(3808608..3809849)PHAGE_Shigel_SfIV_NC_022749: portal protein; NCTC9091_03685; phage(gi557307529)0.0Showinfo_outline
26complement(3809849..3810031)PHAGE_Shigel_SfII_NC_021857: putative integral membrane protein; NCTC9091_03686; phage(gi526244693)4.61e-34Showinfo_outline
27complement(3810043..3811776)PHAGE_Entero_SfV_NC_003444: large terminase subunit; NCTC9091_03687; phage(gi19548992)0.0Showinfo_outline
28complement(3811773..3812267)PHAGE_Entero_SfV_NC_003444: small terminase subunit; NCTC9091_03688; phage(gi19548991)5.99e-115Showinfo_outline
29complement(3812393..3812743)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03689; phage(gi19549040)5.84e-77Showinfo_outline
303813269..3813562PHAGE_Entero_lambda_NC_001416: Bor protein precursor; NCTC9091_03690; phage(gi19263395)3.18e-55Showinfo_outline
31complement(3813594..3814055)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9091_03691; phage(gi100031)6.22e-107Showinfo_outline
32complement(3814052..3814528)PHAGE_Entero_HK542_NC_019769: endolysin; NCTC9091_03692; phage(gi428783397)1.56e-110Showinfo_outline
33complement(3814532..3814867)PHAGE_Entero_SfV_NC_003444: holin; NCTC9091_03693; phage(gi19549036)7.27e-75Showinfo_outline
34complement(3814944..3815996)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03694; phage(gi19549035)0.0Showinfo_outline
35complement(3816147..3816350)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03695; phage(gi19549034)8.40e-10Showinfo_outline
36complement(3816604..3817356)PHAGE_Entero_SfV_NC_003444: antitermination protein Q; NCTC9091_03696; phage(gi19549033)0.0Showinfo_outline
37complement(3817370..3818359)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03697; phage(gi19549032)0.0Showinfo_outline
38complement(3818367..3819164)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03698; phage(gi19549031)1.73e-174Showinfo_outline
39complement(3819183..3819572)PHAGE_Entero_SfV_NC_003444: crossover junction endodeoxyribonuclease; NCTC9091_03699; phage(gi19549030)3.76e-89Showinfo_outline
40complement(3819569..3819895)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03700; phage(gi19549029)3.39e-73Showinfo_outline
41complement(3819895..3820389)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03701; phage(gi19549027)4.78e-113Showinfo_outline
42complement(3820386..3821327)PHAGE_Shigel_SfIV_NC_022749: replication protein; NCTC9091_03702; phage(gi557307567)0.0Showinfo_outline
43complement(3821337..3821675)PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC9091_03703; phage(gi557307566)7.15e-79Showinfo_outline
44complement(3821672..3822223)PHAGE_Entero_SfV_NC_003444: hypothetical protein; e14; phage prophage; NCTC9091_03704(gi19549023)3.00e-121Showinfo_outline
45complement(3822267..3822467)PHAGE_Entero_SfV_NC_003444: repressor; NCTC9091_03705; phage(gi19549022)1.06e-42Showinfo_outline
463822558..3823232PHAGE_Entero_SfV_NC_003444: repressor; NCTC9091_03706; phage(gi19549021)4.37e-168Showinfo_outline
473823405..3823701PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03707; phage(gi19549020)8.15e-69Showinfo_outline
483824302..3824664PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03708; phage(gi19549019)2.40e-83Showinfo_outline
493824730..3825554PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03709; phage(gi19549018)0.0Showinfo_outline
503825682..3826218PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03710; phage(gi19549017)1.72e-129Showinfo_outline
513826209..3826571PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03711; phage(gi19549016)3.14e-85Showinfo_outline
523826571..3826867PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC9091_03712; phage(gi19549015)8.97e-65Showinfo_outline
533827094..3828257PHAGE_Entero_SfV_NC_003444: integrase; NCTC9091_03713; phage(gi19549014)0.0Showinfo_outline
543828271..3828317attR0.0Showinfo_outline
55complement(3828272..3828351)tRNA0.0Showinfo_outline
563828422..3828434attL0.0Showinfo_outline
573828482..3829804PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; NCTC9091_03715; phage(gi16130540)3.24e-23Showinfo_outline
58complement(3829956..3830771)Uncharacterised protein; NCTC9091_037160.0Showinfo_outline
59complement(3830771..3833803)PHAGE_Bacill_0305phi8_36_NC_009760: PcrA helicase; NCTC9091_03717; phage(gi156564011)3.51e-14Showinfo_outline
603841581..3841593attR0.0Showinfo_outline
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5013937 bps
Phages: 5
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

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