Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGDJ01000004.1

GenInfo (GI) Number: 0000000000

Download Results: UGDJ01000004.1.PHASTER.zip

gi|00000000|ref|UGDJ01000004.1| Escherichia coli strain NCTC9092 genome assembly, contig: 5054321, gc%: 50.58%

Download summary as .txt file: summary.txt file_download

Total: 7 prophage regions have been identified, of which 4 regions are intact, 1 regions are incomplete, and 2 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
160.1Kbintact11061263930-324039 info_outlinePHAGE_Entero_DE3_NC_042057(18)49.98%Show info_outline
220Kbintact10022565033-585117 info_outlinePHAGE_Acinet_vB_AbaM_ME3_NC_041884(4)51.91%Show info_outline
36.7Kbquestionable707599904-606678 info_outlinePHAGE_Stx2_c_1717_NC_011357(3)51.03%Show info_outline
461Kbintact15065600766-661802 info_outlinePHAGE_Entero_Mu_NC_000929(35)50.69%Show info_outline
537Kbintact10041957363-994460 info_outlinePHAGE_Entero_DE3_NC_042057(21)51.84%Show info_outline
69.3Kbincomplete40134035057-4044363 info_outlinePHAGE_Shigel_SfIV_NC_022749(2)45.93%Show info_outline
760.4Kbquestionable70644954040-5014522 info_outlinePHAGE_Entero_lambda_NC_001416(26)49.53%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGDJ01000004.1| Escherichia coli strain NCTC9092 genome assembly, contig: 5054321, gc%: 50.58%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 68 CDS

#CDS PositionBLAST HitE-ValueSequence
1263930..263941attL0.0Showinfo_outline
2265652..265671attL0.0Showinfo_outline
3266237..266794PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC9092_00404; phage(gi100057)3.08e-30Showinfo_outline
4complement(266921..267091)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC9092_00405; phage(gi18249921)2.51e-13Showinfo_outline
5267544..268200methylase; NCTC9092_004070.0Showinfo_outline
6complement(268839..271865)PHAGE_Entero_JenK1_NC_029021: tail fiber protein; NCTC9092_00409; phage(gi971766395)1.03e-112Showinfo_outline
7complement(272017..272616)PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; NCTC9092_00410; phage(gi148609401)2.91e-124Showinfo_outline
8complement(272684..273790)PHAGE_Stx2_c_1717_NC_011357: putative tail fiber component J; NCTC9092_00411; phage(gi209447196)0.0Showinfo_outline
9complement(273923..276163)PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC9092_00412; phage(gi100054)0.0Showinfo_outline
10complement(276230..276484)Uncharacterised protein; NCTC9092_004130.0Showinfo_outline
11complement(276641..277183)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_00414; phage(gi100053)5.44e-96Showinfo_outline
12complement(277180..277779)PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC9092_00415; phage(gi100052)2.77e-138Showinfo_outline
13complement(277928..278626)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_00416; phage(gi100051)7.09e-171Showinfo_outline
14complement(278626..278955)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_00417; phage(gi100050)3.85e-75Showinfo_outline
15complement(278955..281525)PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC9092_00418; phage(gi100049)0.0Showinfo_outline
16complement(281506..281919)PHAGE_Entero_DE3_NC_042057: rnaseH; NCTC9092_00419; phage(gi100048)3.60e-59Showinfo_outline
17complement(281946..282377)PHAGE_Entero_DE3_NC_042057: dsDNA binding protein; NCTC9092_00420; phage(gi100047)4.13e-59Showinfo_outline
18complement(282391..283143)PHAGE_Entero_DE3_NC_042057: late promoter transcription; NCTC9092_00421; phage(gi100046)1.95e-139Showinfo_outline
19complement(283151..283546)PHAGE_Entero_DE3_NC_042057: loader of DNA helicase; NCTC9092_00422; phage(gi100045)2.21e-73Showinfo_outline
20complement(283543..284118)PHAGE_Entero_DE3_NC_042057: ssDNA binding protein; NCTC9092_00423; phage(gi100044)3.79e-64Showinfo_outline
21complement(284133..284486)PHAGE_Entero_DE3_NC_042057: RNA polymerase binding protein; NCTC9092_00424; phage(gi100043)1.19e-53Showinfo_outline
22complement(284479..284847)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage accessory DNA packaging protein; Lambda FI homolog; NCTC9092_00425; phage(gi169257229)6.77e-11Showinfo_outline
23complement(284899..285927)PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9092_00426; phage(gi100041)2.70e-146Showinfo_outline
24complement(285985..286332)PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9092_00427; phage(gi100040)4.12e-29Showinfo_outline
25complement(286369..287520)PHAGE_Entero_DE3_NC_042057: RegA; NCTC9092_00428; phage(gi100039)1.01e-89Showinfo_outline
26complement(287539..287874)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage prohead protease; Lambda gpC homolog; NCTC9092_00429; phage(gi169257232)4.26e-45Showinfo_outline
27complement(287864..289456)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_00430; phage(gi100038)0.0Showinfo_outline
28complement(289453..289659)PHAGE_Entero_HK225_NC_019717: head-tail connector gpW; NCTC9092_00431; phage(gi428782379)3.30e-17Showinfo_outline
29complement(289643..291571)PHAGE_Entero_DE3_NC_042057: DNA polymerase; terminase; phage large subunit; NCTC9092_00432(gi100036)0.0Showinfo_outline
30complement(291543..292091)PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC9092_00433; phage(gi100035)1.94e-63Showinfo_outline
31complement(292805..292945)Uncharacterised protein; NCTC9092_004340.0Showinfo_outline
32complement(293296..293763)PHAGE_Escher_TL_2011c_NC_019442: hypothetical protein; NCTC9092_00435; phage(gi418487099)1.60e-93Showinfo_outline
33complement(294062..294595)PHAGE_Entero_BP_4795_NC_004813: putative R protein; Qin; phage prophage; NCTC9092_00436(gi157166033)9.35e-124Showinfo_outline
34294701..294973ybl58; NCTC9092_004370.0Showinfo_outline
35complement(294939..295283)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9092_00438; phage(gi428782371)1.14e-51Showinfo_outline
36complement(295288..295503)PHAGE_Shigel_Ss_VASD_NC_028685: holin lysis protein S; NCTC9092_00439; phage(gi966200466)1.22e-45Showinfo_outline
37complement(295654..297507)PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9092_00440; phage(gi100055)0.0Showinfo_outline
38complement(298483..298559)tRNA0.0Showinfo_outline
39complement(298573..298649)tRNA0.0Showinfo_outline
40complement(298657..298732)tRNA0.0Showinfo_outline
41complement(298782..299831)PHAGE_Entero_phiP27_NC_003356: putative DNA methylase; NCTC9092_00446; phage(gi18249888)0.0Showinfo_outline
42complement(299982..300179)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC9092_00447; phage(gi18249887)6.50e-42Showinfo_outline
43complement(300406..301227)PHAGE_Entero_HK225_NC_019717: late gene regulator Q; NCTC9092_00448; phage(gi428782441)1.44e-116Showinfo_outline
44complement(301224..301604)PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; NCTC9092_00449; phage(gi985761276)7.05e-47Showinfo_outline
45complement(301605..302660)PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC9092_00450; phage(gi557307571)8.99e-111Showinfo_outline
46complement(303495..304160)putative prophage protein; NCTC9092_004520.0Showinfo_outline
47complement(304335..304760)PHAGE_Shigel_Stx_NC_029120: LygF; NCTC9092_00453; phage(gi985761265)3.86e-65Showinfo_outline
48complement(304776..305546)PHAGE_Shigel_Stx_NC_029120: hypothetical protein; NCTC9092_00454; phage(gi985761264)1.78e-92Showinfo_outline
49complement(305568..306314)PHAGE_Shigel_POCJ13_NC_025434: DNA replication protein; NCTC9092_00455; phage(gi725949718)7.73e-151Showinfo_outline
50complement(306321..307283)PHAGE_Shigel_SfIV_NC_022749: replication protein; NCTC9092_00456; phage(gi557307567)2.93e-125Showinfo_outline
51complement(307306..307731)PHAGE_Entero_mEp237_NC_019704: CII protein; NCTC9092_00457; phage(gi435439306)5.09e-06Showinfo_outline
52complement(307715..307996)PHAGE_Entero_c_1_NC_019706: prophage antirepressor; NCTC9092_00458; phage(gi428781783)5.92e-33Showinfo_outline
53308097..308516PHAGE_Entero_c_1_NC_019706: prophage repressor; NCTC9092_00459; phage(gi428781782)6.65e-32Showinfo_outline
54308701..308934PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; NCTC9092_00460; phage(gi472340166)4.03e-11Showinfo_outline
55308946..309347PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; NCTC9092_00461; phage(gi401817573)4.73e-15Showinfo_outline
56complement(309307..309585)Uncharacterised protein; NCTC9092_004620.0Showinfo_outline
57310157..310345inhibitor of cell division encoded within prophage CP-933U; NCTC9092_004640.0Showinfo_outline
58310342..310530phage protein; NCTC9092_004650.0Showinfo_outline
59310626..313097PHAGE_Salmon_118970_sal3_NC_031940: sliding clamp DNA polymerase; NCTC9092_00466; phage(gi100042)3.57e-69Showinfo_outline
60313388..314518PHAGE_Entero_HK022_NC_002166: integrase; NCTC9092_00467; phage(gi9634144)4.75e-68Showinfo_outline
61314562..314581attR0.0Showinfo_outline
62complement(314564..315202)outer membrane protein W; NCTC9092_004680.0Showinfo_outline
63315559..316302membrane protein YciC; NCTC9092_004690.0Showinfo_outline
64316332..316871putative intracellular septation protein; NCTC9092_004700.0Showinfo_outline
65316976..317374putative acyl-coA thioester hydrolase; NCTC9092_004710.0Showinfo_outline
66complement(317414..318169)transport protein TonB; NCTC9092_004720.0Showinfo_outline
67318224..319744PHAGE_Entero_phiFL1A_NC_013646: integrase; NCTC9092_00473; phage(gi281416324)3.71e-10Showinfo_outline
68324039..324050attR0.0Showinfo_outline

Region 2, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
1565033..567123PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC9092_00735; phage(gi100064)5.49e-07Showinfo_outline
2complement(567637..568023)putative tellurium resistance protein TerF; NCTC9092_007360.0Showinfo_outline
3complement(568445..569020)PHAGE_Acinet_vB_AbaM_ME3_NC_041884: putative virion structural protein; NCTC9092_00737; phage(gi100294)1.30e-19Showinfo_outline
4complement(569089..569667)PHAGE_Acinet_vB_AbaM_ME3_NC_041884: putative virion structural protein; NCTC9092_00738; phage(gi100294)7.56e-32Showinfo_outline
5complement(569716..570756)PHAGE_Escher_phAPEC8_NC_020079: integral membrane protein TerC; NCTC9092_00739; phage(gi448260482)2.21e-99Showinfo_outline
6complement(570779..571234)PHAGE_Erwini_vB_EamM_ChrisDB_NC_031126: DNA topoisomerase medium subunit; NCTC9092_00740; phage(gi100004)1.45e-07Showinfo_outline
7complement(571257..572414)TerA; NCTC9092_007410.0Showinfo_outline
8complement(572414..572995)PHAGE_Bacill_CP_51_NC_025423: putative resistance protein; NCTC9092_00742; phage(gi725949538)2.64e-20Showinfo_outline
9573318..574376ATP-grasp domain-containing protein; NCTC9092_007430.0Showinfo_outline
10574386..575528PHAGE_Acinet_vB_AbaM_ME3_NC_041884: putative virion structural protein; NCTC9092_00744; phage(gi100292)4.90e-38Showinfo_outline
11575521..576294PHAGE_Acinet_vB_AbaM_ME3_NC_041884: hypothetical protein; NCTC9092_00745; phage(gi100291)1.11e-07Showinfo_outline
12576296..577375PHAGE_Acinet_vB_AbaM_ME3_NC_041884: hypothetical protein; NCTC9092_00746; phage(gi100290)9.91e-48Showinfo_outline
13577375..578331ATP/GTP-binding protein; NCTC9092_007470.0Showinfo_outline
14578342..579550PHAGE_Clostr_phiCD146_NC_028958: hypothetical protein; NCTC9092_00748; phage(gi971820170)3.14e-13Showinfo_outline
15579568..580035TerW; NCTC9092_007490.0Showinfo_outline
16580296..580625Uncharacterised protein; NCTC9092_007500.0Showinfo_outline
17580612..580992PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9092_00751; phage(gi209447152)5.38e-14Showinfo_outline
18581035..581892PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9092_00752; phage(gi209447153)2.96e-32Showinfo_outline
19complement(581896..583509)PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9092_00753; phage(gi209447153)0.0Showinfo_outline
20complement(583540..583890)PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9092_00754; phage(gi209447152)1.90e-50Showinfo_outline
21complement(583887..584312)PHAGE_Stx2_c_1717_NC_011357: truncated transposase; NCTC9092_00755; phage(gi209447151)5.47e-15Showinfo_outline
22584632..585117PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9092_00756; phage(gi209447153)3.90e-28Showinfo_outline

Region 3, total 7 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(599904..600722)PROPHAGE_Escher_CFT073: transposase insF; NCTC9092_00776; phage(gi26249410)0.0Showinfo_outline
2600862..601173PROPHAGE_Escher_EDL933: partial putative transposase; NCTC9092_00777; phage(gi15801060)8.86e-69Showinfo_outline
3601249..601629PHAGE_Stx2_c_1717_NC_011357: truncated transposase; NCTC9092_00778; phage(gi209447151)4.68e-88Showinfo_outline
4601626..601973PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9092_00779; phage(gi209447152)1.25e-78Showinfo_outline
5602023..603561PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9092_00780; phage(gi209447153)0.0Showinfo_outline
6603887..604156Uncharacterised protein; NCTC9092_007810.0Showinfo_outline
7complement(604318..606678)PHAGE_Klebsi_Sugarland_NC_042093: putative virion structural protein; NCTC9092_00782; phage(gi100294)2.89e-25Showinfo_outline

Region 4, total 67 CDS

#CDS PositionBLAST HitE-ValueSequence
1600766..600777attL0.0Showinfo_outline
2complement(615018..616220)PROPHAGE_Escher_EDL933: P4 family integrase; NCTC9092_00787; phage(gi15801047)0.0Showinfo_outline
3complement(616949..617623)inner membrane protein; NCTC9092_007880.0Showinfo_outline
4617720..617995PHAGE_Entero_P1_NC_005856: InsA; NCTC9092_00789; phage(gi46401643)4.76e-62Showinfo_outline
5618040..618417PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC9092_00790; phage(gi557307573)5.38e-88Showinfo_outline
6complement(618428..618712)inner membrane protein; NCTC9092_007910.0Showinfo_outline
7complement(618709..619032)(acyl-carrier-protein) S-malonyltransferase-like protein; NCTC9092_007920.0Showinfo_outline
8619118..619417PROPHAGE_Escher_MG1655: IS3 transposase A; NCTC9092_00793; phage(gi226524700)6.69e-65Showinfo_outline
9619414..619749PROPHAGE_Escher_MG1655: IS3 transposase B; NCTC9092_00794; phage(gi16128284)3.74e-56Showinfo_outline
10complement(620028..620639)PHAGE_Pseudo_H70_NC_027384: repressor; NCTC9092_00795; phage(gi849255374)1.47e-10Showinfo_outline
11620796..621062PHAGE_Entero_Mu_NC_000929: DNA binding protein ner; NCTC9092_00796; phage(gi9633495)1.00e-07Showinfo_outline
12621073..623163PROPHAGE_Escher_Sakai: phage transposase; NCTC9092_00797; phage(gi15834199)0.0Showinfo_outline
13623239..624171PHAGE_Entero_Mu_NC_000929: DNA transposition protein; NCTC9092_00798; phage(gi9633513)3.34e-90Showinfo_outline
14624174..624395Uncharacterised protein; NCTC9092_007990.0Showinfo_outline
15624408..624662Uncharacterised protein; NCTC9092_008000.0Showinfo_outline
16624664..624945PHAGE_Burkho_BcepMigl_NC_019917: hypothetical protein; NCTC9092_00801; phage(gi431809888)3.33e-17Showinfo_outline
17624942..625214Uncharacterised protein; NCTC9092_008020.0Showinfo_outline
18625219..625512Uncharacterised protein; NCTC9092_008030.0Showinfo_outline
19625524..626054PHAGE_Entero_Mu_NC_000929: Gam; NCTC9092_00804; phage(gi9633500)2.52e-65Showinfo_outline
20626200..626733PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC9092_00805; phage(gi9633501)1.92e-75Showinfo_outline
21626733..627248PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC9092_00806; phage(gi9633502)7.12e-62Showinfo_outline
22627255..627803PHAGE_Mycoba_Thibault_NC_023738: gp103; NCTC9092_00807; phage(gi593780263)1.08e-08Showinfo_outline
23627800..627985Uncharacterised protein; NCTC9092_008080.0Showinfo_outline
24627982..628356PHAGE_Entero_SfMu_NC_027382: hypothetical protein; NCTC9092_00809; phage(gi849255244)1.27e-09Showinfo_outline
25628349..628546PHAGE_Pseudo_14_1_NC_011703: hypothetical protein; NCTC9092_00810; phage(gi218148625)5.99e-06Showinfo_outline
26628536..628832Uncharacterised protein; NCTC9092_008110.0Showinfo_outline
27628829..629338PHAGE_Entero_Mu_NC_000929: hypothetical protein; modulation; phage of host gene protein; NCTC9092_00812(gi9633506)8.26e-33Showinfo_outline
28629409..629831PHAGE_Entero_Mu_NC_000929: putative transcription regulator; NCTC9092_00813; phage(gi9633511)1.06e-30Showinfo_outline
29629903..630403PHAGE_Xantho_CP1_NC_019933: hypothetical protein; NCTC9092_00814; phage(gi431811023)5.93e-33Showinfo_outline
30630516..630866PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC9092_00815; phage(gi100132)5.31e-06Showinfo_outline
31631013..631306PHAGE_Vibrio_12B12_NC_021070: C4-type zinc finger protein; NCTC9092_00816; phage(gi481019174)6.81e-08Showinfo_outline
32631287..631598PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC9092_00817; phage(gi9633516)5.69e-12Showinfo_outline
33631591..631881PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC9092_00818; phage(gi9633517)3.62e-35Showinfo_outline
34631884..632465PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC9092_00819; phage(gi9633518)8.17e-66Showinfo_outline
35632476..632724Uncharacterised protein; NCTC9092_008200.0Showinfo_outline
36632724..634388PHAGE_Entero_Mu_NC_000929: putative portal protein; NCTC9092_00821; phage(gi9633519)0.0Showinfo_outline
37634388..635977PHAGE_Entero_Mu_NC_000929: hypothetical protein; Portal; phage protein; NCTC9092_00822(gi9633520)0.0Showinfo_outline
38635961..637292PHAGE_Entero_Mu_NC_000929: virion morphogenesis late F orf; NCTC9092_00823; phage(gi9633521)0.0Showinfo_outline
39637414..637887PHAGE_Entero_Mu_NC_000929: putative virion morphogenesis protein; NCTC9092_00824; phage(gi9633522)3.65e-50Showinfo_outline
40638065..639198PHAGE_Entero_Mu_NC_000929: putative protease protein; NCTC9092_00825; phage(gi9633523)9.49e-110Showinfo_outline
41639198..640145PHAGE_Entero_Mu_NC_000929: major head subunit; NCTC9092_00826; phage(gi9633525)5.68e-158Showinfo_outline
42640189..640548PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC9092_00827; phage(gi9633526)2.01e-05Showinfo_outline
43640545..640964PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC9092_00828; phage(gi9633527)7.86e-34Showinfo_outline
44640961..641524PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC9092_00829; phage(gi9633528)6.45e-44Showinfo_outline
45641528..641806PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC9092_00830; phage(gi9633529)7.45e-11Showinfo_outline
46641806..643308PHAGE_Entero_Mu_NC_000929: major tail subunit; NCTC9092_00831; phage(gi9633530)9.89e-163Showinfo_outline
47643317..643682PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC9092_00832; phage(gi9633531)2.89e-33Showinfo_outline
48643697..644173PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC9092_00833; phage(gi9633532)3.29e-29Showinfo_outline
49644300..646219PHAGE_Entero_Mu_NC_000929: putative tape measure protein; NCTC9092_00834; phage(gi9633533)1.55e-99Showinfo_outline
50646363..647712PHAGE_Entero_Mu_NC_000929: putative DNA circulation protein; NCTC9092_00835; phage(gi9633534)8.22e-79Showinfo_outline
51647696..648820PHAGE_Entero_Mu_NC_000929: putative tail protein; NCTC9092_00836; phage(gi9633535)3.68e-115Showinfo_outline
52648810..649424PHAGE_Entero_Mu_NC_000929: putative baseplate assembly protein; NCTC9092_00837; phage(gi9633536)3.19e-67Showinfo_outline
53649417..649854PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC9092_00838; phage(gi9633537)4.56e-50Showinfo_outline
54649854..650936PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC9092_00839; phage(gi9633538)1.08e-123Showinfo_outline
55650927..651487PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC9092_00840; phage(gi9633539)1.92e-55Showinfo_outline
56651487..652377PHAGE_Entero_Mu_NC_000929: tail fiber; NCTC9092_00841; phage(gi9633540)1.08e-43Showinfo_outline
57652429..652566PROPHAGE_Escher_Sakai: putative tail fiber assembly protein; NCTC9092_00842; phage(gi15834244)5.52e-17Showinfo_outline
58652635..652949PROPHAGE_Escher_Sakai: putative tail fiber assembly protein; NCTC9092_00843; phage(gi15834244)1.32e-34Showinfo_outline
59653411..653983PHAGE_Entero_Mu_NC_000929: Gin; NCTC9092_00844; phage(gi9633542)8.70e-96Showinfo_outline
60654011..654022attR0.0Showinfo_outline
61654069..656123PHAGE_Entero_BP_4795_NC_004813: hypothetical protein YjhS; NCTC9092_00845; phage(gi157166028)0.0Showinfo_outline
62656268..656450PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; NCTC9092_00846; phage(gi725949738)1.87e-17Showinfo_outline
63656486..656740PHAGE_Escher_TL_2011c_NC_019442: hypothetical protein; NCTC9092_00847; phage(gi418487098)3.66e-09Showinfo_outline
64complement(656908..657201)Uncharacterised protein; NCTC9092_008480.0Showinfo_outline
65657450..657896PHAGE_Entero_Mu_NC_000929: Mom; NCTC9092_00849; phage(gi9633544)2.43e-31Showinfo_outline
66659099..659662PHAGE_Entero_Mu_NC_000929: Mom; NCTC9092_00851; phage(gi9633544)6.74e-91Showinfo_outline
67complement(660444..661802)PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; NCTC9092_00852; phage(gi100150)2.01e-24Showinfo_outline

Region 5, total 43 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(957363..959573)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_01122; phage(gi100056)1.87e-102Showinfo_outline
2complement(959638..960237)PHAGE_Stx2_c_1717_NC_011357: outer membrane protein Lom precursor; NCTC9092_01123; phage(gi209447197)7.20e-142Showinfo_outline
3complement(960308..963805)PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC9092_01124; phage(gi100054)0.0Showinfo_outline
4962138..962149attL0.0Showinfo_outline
5complement(963866..964438)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_01125; phage(gi100053)4.66e-130Showinfo_outline
6complement(964435..965178)PHAGE_Entero_mEp460_NC_019716: tail fiber component; NCTC9092_01126; phage(gi428782332)0.0Showinfo_outline
7complement(965184..965882)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_01127; phage(gi100051)1.58e-171Showinfo_outline
8complement(965882..966211)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_01128; phage(gi100050)5.12e-76Showinfo_outline
9complement(966208..966393)PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC9092_01129; phage(gi100049)3.58e-25Showinfo_outline
10complement(966417..967265)PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC9092_01130; phage(gi100049)0.0Showinfo_outline
11complement(967291..968703)PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC9092_01131; phage(gi100049)0.0Showinfo_outline
12complement(968763..969197)PHAGE_Entero_DE3_NC_042057: rnaseH; NCTC9092_01132; phage(gi100048)1.06e-101Showinfo_outline
13complement(969179..969601)PHAGE_Entero_DE3_NC_042057: dsDNA binding protein; NCTC9092_01133; phage(gi100047)2.34e-101Showinfo_outline
14complement(969617..970357)PHAGE_Entero_DE3_NC_042057: late promoter transcription; NCTC9092_01134; phage(gi100046)9.94e-176Showinfo_outline
15complement(970365..970760)PHAGE_Entero_DE3_NC_042057: loader of DNA helicase; NCTC9092_01135; phage(gi100045)6.43e-91Showinfo_outline
16complement(970757..971335)PHAGE_Entero_DE3_NC_042057: ssDNA binding protein; NCTC9092_01136; phage(gi100044)1.69e-131Showinfo_outline
17complement(971347..971700)PHAGE_Entero_DE3_NC_042057: RNA polymerase binding protein; NCTC9092_01137; phage(gi100043)3.60e-78Showinfo_outline
18complement(971712..972107)PHAGE_Entero_DE3_NC_042057: sliding clamp DNA polymerase; NCTC9092_01138; phage(gi100042)8.48e-74Showinfo_outline
19complement(972149..973174)PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9092_01139; phage(gi100041)0.0Showinfo_outline
20complement(973230..973562)PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9092_01140; phage(gi100040)9.90e-73Showinfo_outline
21complement(973572..974891)PHAGE_Entero_DE3_NC_042057: RegA; NCTC9092_01141; phage(gi100039)0.0Showinfo_outline
22complement(974872..976473)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_01142; phage(gi100038)0.0Showinfo_outline
23complement(976470..976676)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_01143; phage(gi100037)4.55e-43Showinfo_outline
24complement(976673..978598)PHAGE_Entero_DE3_NC_042057: DNA polymerase; NCTC9092_01144; phage(gi100036)0.0Showinfo_outline
25complement(978573..979118)PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC9092_01145; phage(gi100035)1.46e-128Showinfo_outline
26979798..980208PHAGE_Entero_DE3_NC_042057: replication and recombination DNA helicase; NCTC9092_01146; phage(gi100033)1.04e-75Showinfo_outline
27complement(980401..980532)GnsA/GnsB family transcriptional regulator; NCTC9092_011470.0Showinfo_outline
28complement(981782..982279)PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; NCTC9092_01149; phage(gi16765210)1.80e-62Showinfo_outline
29complement(982276..982692)PHAGE_Entero_mEp460_NC_019716: endolysin; NCTC9092_01150; phage(gi428782372)3.95e-94Showinfo_outline
30complement(983976..984122)PHAGE_Entero_YYZ_2008_NC_011356: putative endolysin; NCTC9092_01152; phage(gi209427769)6.73e-19Showinfo_outline
31complement(984119..984430)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9092_01153; phage(gi428782371)5.21e-40Showinfo_outline
32complement(984435..984641)PHAGE_Entero_mEp460_NC_019716: porin; NCTC9092_01154; phage(gi428782370)2.64e-40Showinfo_outline
33984683..984802Uncharacterised protein; NCTC9092_011550.0Showinfo_outline
34985920..986132cold shock-like protein CspF; NCTC9092_011570.0Showinfo_outline
35complement(986555..987307)PHAGE_Entero_SfV_NC_003444: antitermination protein Q; NCTC9092_01158; phage(gi19549033)3.43e-178Showinfo_outline
36complement(987321..988370)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9092_01159; phage(gi428782365)1.20e-139Showinfo_outline
37complement(988766..989584)PROPHAGE_Escher_CFT073: transposase insF; NCTC9092_01160; phage(gi26249410)0.0Showinfo_outline
38complement(989620..989922)PROPHAGE_Xantho_33913: ISxac3 transposase; NCTC9092_01161; phage(gi21231087)2.41e-12Showinfo_outline
39989938..991614PHAGE_Salmon_118970_sal3_NC_031940: sliding clamp DNA polymerase; NCTC9092_01162; phage(gi100042)3.89e-71Showinfo_outline
40991641..991652attR0.0Showinfo_outline
41991702..991938PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage excisionase; NCTC9092_01163; phage(gi169257269)1.10e-20Showinfo_outline
42991973..993253PHAGE_Entero_YYZ_2008_NC_011356: putative integrase; Qin; phage prophage; NCTC9092_01164(gi209427727)0.0Showinfo_outline
43complement(993441..994460)PHAGE_Synech_S_SM2_NC_015279: zinc-containing alcohol dehydrogenase superfamily protein; NCTC9092_01165; phage(gi326781942)8.41e-19Showinfo_outline

Region 6, total 13 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(4035057..4035932)PHAGE_Stx2_II_NC_004914: hypothetical protein; NCTC9092_04139; phage(gi32171148)3.29e-31Showinfo_outline
2complement(4036086..4036904)PROPHAGE_Escher_CFT073: transposase insF; NCTC9092_04140; phage(gi26249410)0.0Showinfo_outline
3complement(4036940..4037239)PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfA; NCTC9092_04141; phage(gi557307550)4.24e-08Showinfo_outline
4complement(4037420..4037902)lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; NCTC9092_041420.0Showinfo_outline
5complement(4037866..4038363)lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; NCTC9092_041430.0Showinfo_outline
6complement(4038428..4039378)virulence protein; NCTC9092_041440.0Showinfo_outline
7complement(4039383..4040471)glycosyl transferase family protein; NCTC9092_041450.0Showinfo_outline
8complement(4040474..4041295)putative polysaccharide deacetylase; NCTC9092_041460.0Showinfo_outline
94041502..4041804PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; NCTC9092_04147; phage(gi24373865)4.55e-07Showinfo_outline
104042046..4042459PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; NCTC9092_04148; phage(gi41057343)4.84e-76Showinfo_outline
114042456..4042698PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfB; NCTC9092_04149; phage(gi557307549)6.90e-11Showinfo_outline
124042781..4043038KpLE2 phage-like element; NCTC9092_041500.0Showinfo_outline
13complement(4043596..4044363)PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC9092_04151; phage(gi371496158)1.10e-17Showinfo_outline

Region 7, total 66 CDS

#CDS PositionBLAST HitE-ValueSequence
14954040..4954051attL0.0Showinfo_outline
2complement(4954210..4955280)PHAGE_Entero_HK106_NC_019768: integrase; NCTC9092_05015; phage(gi428783305)0.0Showinfo_outline
3complement(4955562..4955840)PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC9092_05016; phage(gi849250253)1.41e-62Showinfo_outline
4complement(4956204..4956419)PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9092_05017; phage(gi100017)7.26e-47Showinfo_outline
5complement(4956496..4956687)PHAGE_Escher_PA28_NC_041935: exonuclease A; NCTC9092_05018; phage(gi100018)7.36e-39Showinfo_outline
6complement(4956660..4956842)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_05019; phage(gi100011)7.37e-37Showinfo_outline
7complement(4956839..4957519)PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9092_05020; phage(gi100019)2.18e-169Showinfo_outline
8complement(4957516..4958301)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_05021; phage(gi100013)0.0Showinfo_outline
9complement(4958307..4958603)PHAGE_Escher_PA28_NC_041935: DNA helicase; NCTC9092_05022; phage(gi100021)4.29e-67Showinfo_outline
10complement(4958679..4958885)PHAGE_Entero_HK225_NC_019717: Kil protein; NCTC9092_05023; phage(gi428782413)9.87e-36Showinfo_outline
11complement(4959374..4959877)Uncharacterised protein; NCTC9092_050240.0Showinfo_outline
12complement(4959874..4960461)HTH-type transcriptional regulator ygiT; NCTC9092_050250.0Showinfo_outline
13complement(4960486..4960896)Uncharacterised protein; NCTC9092_050260.0Showinfo_outline
14complement(4961016..4961501)PHAGE_Salmon_BTP1_NC_042346: RegA; NCTC9092_05027; phage(gi100039)4.67e-96Showinfo_outline
154961819..4962046PHAGE_Salmon_BTP1_NC_042346: clamp-loader subunit; NCTC9092_05028; phage(gi100040)5.69e-31Showinfo_outline
164962077..4962616PHAGE_Entero_phi80_NC_021190: CII decision making protein; NCTC9092_05029; phage(gi824479625)2.21e-86Showinfo_outline
174962613..4963632PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9092_05030; phage(gi100031)1.89e-142Showinfo_outline
184963629..4964330PHAGE_Entero_DE3_NC_042057: DNA primase subunit; NCTC9092_05031; phage(gi100025)7.18e-167Showinfo_outline
194964327..4964629PHAGE_Escher_PA28_NC_041935: replication and recombination DNA helicase; NCTC9092_05032; phage(gi100033)4.33e-60Showinfo_outline
204964697..4965029PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; NCTC9092_05033; phage(gi311992758)6.74e-10Showinfo_outline
214965284..4966810PHAGE_Burkho_Bcep176_NC_007497: gp53; DLP12; phage prophage; NCTC9092_05034(gi77864678)8.74e-37Showinfo_outline
224967275..4967826kinase inhibitor; NCTC9092_050350.0Showinfo_outline
234967836..4968633DNA-binding transcriptional regulator; DLP12 prophage; NCTC9092_050360.0Showinfo_outline
244968848..4969303PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; DNA; phage base-flipping protein; NCTC9092_05037(gi401817579)3.77e-79Showinfo_outline
254969303..4969473PHAGE_Escher_HK639_NC_016158: NinE; NCTC9092_05038; phage(gi356870663)5.44e-19Showinfo_outline
264969466..4969756PHAGE_Salmon_118970_sal4_NC_030919: replication and recombination DNA helicase; NCTC9092_05039; phage(gi100033)3.69e-42Showinfo_outline
274969753..4970115PHAGE_Salmon_118970_sal4_NC_030919: membrane-associated initiation of head vertex; NCTC9092_05040; phage(gi100034)5.02e-38Showinfo_outline
284970338..4970721PHAGE_Shigel_Stx_NC_029120: antitermination protein Q; NCTC9092_05041; phage(gi985761278)4.06e-72Showinfo_outline
29complement(4970910..4971992)outer membrane porin protein NmpC; NCTC9092_050420.0Showinfo_outline
304972581..4972796PHAGE_Entero_VT2phi_272_NC_028656: holin; NCTC9092_05043; phage(gi966197762)5.28e-37Showinfo_outline
314972796..4973293PHAGE_Entero_SfI_NC_027339: lysozyme; NCTC9092_05044; phage(gi849250312)6.06e-117Showinfo_outline
324973290..4973751PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_05045; phage(gi100031)4.26e-106Showinfo_outline
33complement(4973783..4974076)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_05046; phage(gi100032)1.28e-54Showinfo_outline
344975022..4975567PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC9092_05047; phage(gi100035)3.88e-129Showinfo_outline
354975542..4977467PHAGE_Entero_DE3_NC_042057: DNA polymerase; NCTC9092_05048; phage(gi100036)0.0Showinfo_outline
364977464..4977670PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_05049; phage(gi100037)4.55e-43Showinfo_outline
374977667..4979268PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_05050; phage(gi100038)0.0Showinfo_outline
384979249..4980286PHAGE_Entero_DE3_NC_042057: RegA; NCTC9092_05051; phage(gi100039)0.0Showinfo_outline
394980283..4980567PHAGE_Entero_DE3_NC_042057: RegA; NCTC9092_05052; phage(gi100039)1.74e-56Showinfo_outline
404980577..4980909PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9092_05053; phage(gi100040)9.90e-73Showinfo_outline
414980965..4981891PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC9092_05054; phage(gi100041)6.42e-180Showinfo_outline
424982031..4982426PHAGE_Entero_DE3_NC_042057: sliding clamp DNA polymerase; NCTC9092_05055; phage(gi100042)8.48e-74Showinfo_outline
434982438..4982680PHAGE_Entero_DE3_NC_042057: RNA polymerase binding protein; NCTC9092_05056; phage(gi100043)4.56e-22Showinfo_outline
44complement(4982926..4983564)Uncharacterised protein; NCTC9092_050570.0Showinfo_outline
454983616..4983771PHAGE_Entero_DE3_NC_042057: loader of DNA helicase; NCTC9092_05058; phage(gi100045)6.03e-29Showinfo_outline
464983779..4983937PHAGE_Entero_DE3_NC_042057: late promoter transcription; NCTC9092_05059; phage(gi100046)2.28e-29Showinfo_outline
474984037..4984474PHAGE_Entero_DE3_NC_042057: late promoter transcription; NCTC9092_05060; phage(gi100046)8.62e-78Showinfo_outline
484984944..4985378PHAGE_Entero_DE3_NC_042057: rnaseH; NCTC9092_05061; phage(gi100048)1.06e-101Showinfo_outline
494985503..4986048PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC9092_05062; phage(gi100049)1.33e-105Showinfo_outline
504986095..4987936PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC9092_05063; phage(gi100049)0.0Showinfo_outline
514987933..4988262PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_05064; phage(gi100050)5.12e-76Showinfo_outline
524988262..4988462PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_05065; phage(gi100051)3.03e-32Showinfo_outline
534988521..4988961PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_05066; phage(gi100051)5.63e-103Showinfo_outline
544988967..4989710PHAGE_Entero_mEp460_NC_019716: tail fiber component; NCTC9092_05067; phage(gi428782332)0.0Showinfo_outline
554989707..4990279PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9092_05068; phage(gi100053)4.66e-130Showinfo_outline
564990340..4993837PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC9092_05069; phage(gi100054)0.0Showinfo_outline
574993908..4994507PHAGE_Stx2_c_1717_NC_011357: outer membrane protein Lom precursor; NCTC9092_05070; phage(gi209447197)7.20e-142Showinfo_outline
584994572..4997646PROPHAGE_Escher_MG1655: Qin prophage; predicted side tail fibre assembly protein; NCTC9092_05071; phage(gi16129506)0.0Showinfo_outline
59complement(4998319..4998909)PHAGE_Entero_Mu_NC_000929: Gin; NCTC9092_05073; phage(gi9633542)2.32e-29Showinfo_outline
60complement(4999226..4999459)PHAGE_Salmon_118970_sal3_NC_031940: replication and recombination DNA helicase; NCTC9092_05074; phage(gi100033)1.44e-44Showinfo_outline
615000246..5001529PHAGE_Burkho_phi1026b_NC_005284: gp59; NCTC9092_05075; phage(gi38707949)7.81e-28Showinfo_outline
625001618..5003078putative sugar dehydrogenase; NCTC9092_050760.0Showinfo_outline
63complement(5003113..5003316)PHAGE_Salmon_SSU5_NC_018843: putative selenium-binding protein YdfZ; NCTC9092_05077; phage(gi410491512)4.86e-18Showinfo_outline
64complement(5003493..5004179)GntR family transcriptional regulator; NCTC9092_050780.0Showinfo_outline
65complement(5004268..5005014)PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; NCTC9092_05079; phage(gi971760361)8.52e-10Showinfo_outline
665014522..5014533attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5054321 bps
Phages: 7
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download