Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGFB01000004.1

GenInfo (GI) Number: 0000000000

Download Results: UGFB01000004.1.PHASTER.zip

gi|00000000|ref|UGFB01000004.1| Escherichia coli strain NCTC9705 genome assembly, contig: 4734296, gc%: 50.82%

Download summary as .txt file: summary.txt file_download

Total: 4 prophage regions have been identified, of which 2 regions are intact, 1 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
135.5Kbincomplete502568146-103710 info_outlinePHAGE_Bacter_APSE_2_NC_011551(3)47.29%Show info_outline
248Kbquestionable70412016619-2064636 info_outlinePHAGE_Salmon_SPN3UB_NC_019545(6)48.64%Show info_outline
341.4Kbintact150502339114-2380607 info_outlinePHAGE_Entero_mEp460_NC_019716(24)50.59%Show info_outline
444.4Kbintact150622756532-2800950 info_outlinePHAGE_Entero_SfI_NC_027339(27)49.09%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGFB01000004.1| Escherichia coli strain NCTC9705 genome assembly, contig: 4734296, gc%: 50.82%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 27 CDS

#CDS PositionBLAST HitE-ValueSequence
168146..68157attL0.0Showinfo_outline
2complement(69591..69878)PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC9705_00382; phage(gi557307568)3.24e-05Showinfo_outline
3complement(70110..70301)putative prophage protein; NCTC9705_003830.0Showinfo_outline
470554..70736PHAGE_Stenot_S1_NC_011589: putative repressor protein; NCTC9705_00384; phage(gi213163928)7.43e-09Showinfo_outline
5complement(71318..71419)Uncharacterised protein; NCTC9705_003850.0Showinfo_outline
6complement(72142..74247)PHAGE_Shigel_Sf6_NC_005344: gene 13 protein; NCTC9705_00386; phage(gi41057291)7.16e-89Showinfo_outline
7complement(74247..75668)PHAGE_Bacter_APSE_2_NC_011551: injection gp20; NCTC9705_00387; phage(gi212499730)2.35e-155Showinfo_outline
8complement(75668..76345)PHAGE_Bacter_APSE_2_NC_011551: injection gp7; NCTC9705_00388; phage(gi212499729)9.95e-65Showinfo_outline
9complement(76339..76800)PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein; NCTC9705_00389; phage(gi212499728)7.63e-31Showinfo_outline
10complement(76817..76978)putative prophage protein; NCTC9705_003900.0Showinfo_outline
11complement(77554..80310)PHAGE_Entero_P4_NC_001609: DNA primase; NCTC9705_00391; phage(gi9627512)2.75e-35Showinfo_outline
12complement(80297..80668)putative prophage protein; NCTC9705_003920.0Showinfo_outline
13complement(80661..81002)putative prophage protein; NCTC9705_003930.0Showinfo_outline
14complement(81013..81615)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC9705_00394; phage(gi18249870)3.14e-27Showinfo_outline
15complement(81608..81829)putative prophage protein; NCTC9705_003950.0Showinfo_outline
16complement(81826..82089)putative prophage protein; NCTC9705_003960.0Showinfo_outline
17complement(82086..82280)putative prophage protein; NCTC9705_003970.0Showinfo_outline
18complement(83334..83516)putative prophage protein; NCTC9705_004000.0Showinfo_outline
19complement(83509..84342)PHAGE_Escher_TL_2011c_NC_019442: putative antirepressor; NCTC9705_00401; phage(gi418487055)2.76e-28Showinfo_outline
20complement(84355..84786)putative prophage protein; NCTC9705_004020.0Showinfo_outline
21complement(84786..84989)putative prophage regulatory protein; NCTC9705_004030.0Showinfo_outline
22complement(85096..86046)Uncharacterised protein; NCTC9705_004040.0Showinfo_outline
23complement(86065..87318)PHAGE_Burkho_BcepC6B_NC_005887: putative integrase protein; NCTC9705_00405; phage(gi48697215)2.04e-51Showinfo_outline
24complement(87507..88370)putative alpha helix protein; NCTC9705_004060.0Showinfo_outline
2588497..89213ribonuclease PH; NCTC9705_004070.0Showinfo_outline
2689279..89920PHAGE_Prochl_P_SSM2_NC_006883: orotate phosphoribosyltransferase; NCTC9705_00408; phage(gi61805915)4.19e-05Showinfo_outline
27103710..103721attR0.0Showinfo_outline

Region 2, total 45 CDS

#CDS PositionBLAST HitE-ValueSequence
12016619..2016632attL0.0Showinfo_outline
2complement(2030272..2030934)PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: putative DNA polymerase III epsilon subunit; NCTC9705_02277; phage(gi414087193)7.35e-20Showinfo_outline
3complement(2030958..2031614)putative carbon-nitrogen hydrolase; NCTC9705_022780.0Showinfo_outline
4complement(2031716..2031946)PHAGE_Pectob_ZF40_NC_019522: putative DNA polymerase; NCTC9705_02279; phage(gi422936677)1.24e-22Showinfo_outline
52032085..2032459putative copper resistance protein; NCTC9705_022800.0Showinfo_outline
62032463..2033335putative copper resistance protein; NCTC9705_022810.0Showinfo_outline
72033348..2033689PHAGE_Salmon_SEN1_NC_029003: hypothetical protein; NCTC9705_02282; phage(gi971764937)6.31e-12Showinfo_outline
8complement(2034081..2035157)PHAGE_Entero_HK022_NC_002166: integrase; NCTC9705_02285; phage(gi9634144)1.54e-86Showinfo_outline
9complement(2035552..2035698)Rac prophage; predicted protein; NCTC9705_022860.0Showinfo_outline
10complement(2035949..2037001)PHAGE_Phage_Gifsy_2_NC_010393: conserved hypothetical bacteriophage protein; NCTC9705_02287; phage(gi169257271)9.59e-105Showinfo_outline
11complement(2037013..2040099)PHAGE_Phage_Gifsy_2_NC_010393: putatitive bacteriophage exodeoxyribonuclease VIII; NCTC9705_02288; phage(gi169257272)8.89e-161Showinfo_outline
12complement(2040199..2040474)putative bacteriophage protein; NCTC9705_022890.0Showinfo_outline
13complement(2040549..2040719)PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; NCTC9705_02290; phage(gi169257274)1.21e-06Showinfo_outline
14complement(2040719..2040940)PHAGE_Shigel_Stx_NC_029120: Kil protein; NCTC9705_02291; phage(gi985761255)4.04e-45Showinfo_outline
15complement(2041332..2041682)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC9705_02292; phage(gi356870645)4.09e-32Showinfo_outline
16complement(2042000..2042476)Rac prophage; putative DNA-binding transcriptional regulator; NCTC9705_022930.0Showinfo_outline
172042600..2042896PHAGE_Aggreg_S1249_NC_013597: RNA polymerase sigma factor; putative; phage DNA-binding transcriptional regulator; NCTC9705_02294(gi100049)4.55e-19Showinfo_outline
182042919..2043341PHAGE_Entero_mEp237_NC_019704: CII protein; NCTC9705_02295; phage(gi435439306)1.24e-09Showinfo_outline
192043354..2044211PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; Lambda gpo homolog; NCTC9705_02296; phage(gi169257279)3.21e-25Showinfo_outline
202044218..2044964PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; NCTC9705_02297; phage(gi169257280)6.14e-95Showinfo_outline
212044987..2045733PHAGE_Shigel_Stx_NC_029120: hypothetical protein; NCTC9705_02298; phage(gi985761264)3.71e-72Showinfo_outline
222045749..2046153PHAGE_Shigel_Stx_NC_029120: LygF; NCTC9705_02299; phage(gi985761265)4.56e-64Showinfo_outline
232046178..2046480PHAGE_Shigel_Ss_VASD_NC_028685: hypothetical protein; NCTC9705_02300; phage(gi966200435)6.51e-28Showinfo_outline
242046482..2046838PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; NCTC9705_02301; phage(gi100050)1.97e-11Showinfo_outline
252046932..2047114PHAGE_Entero_phiEF24C_NC_009904: hypothetical protein; NCTC9705_02302; phage(gi158079459)1.82e-07Showinfo_outline
262047107..2047283PHAGE_Serrat_vB_Sru_IME250_NC_042047: hypothetical protein; NCTC9705_02303; phage(gi100129)4.07e-13Showinfo_outline
272047280..2047639PHAGE_Escher_Av_05_NC_025830: hypothetical protein; NCTC9705_02304; phage(gi730985110)8.61e-47Showinfo_outline
282047640..2047849PHAGE_Escher_RCS47_NC_042128: baseplate wedge subunit; NCTC9705_02305; phage(gi100108)1.47e-43Showinfo_outline
292047846..2048379PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9705_02306; phage(gi100010)4.23e-48Showinfo_outline
302048376..2048771PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; NCTC9705_02307; phage(gi100050)5.44e-51Showinfo_outline
312049687..2050286PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; NCTC9705_02309; phage(gi169257286)2.67e-68Showinfo_outline
322050286..2050576PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; NCTC9705_02310; phage(gi327198620)6.90e-42Showinfo_outline
332050573..2051115antitermination protein; NCTC9705_023110.0Showinfo_outline
342051469..2051544tRNA0.0Showinfo_outline
352051548..2051622tRNA0.0Showinfo_outline
362052401..2052616PHAGE_Entero_VT2phi_272_NC_028656: holin; NCTC9705_02314; phage(gi966197762)2.34e-37Showinfo_outline
372052616..2053113PHAGE_Entero_SfI_NC_027339: lysozyme; NCTC9705_02315; phage(gi849250312)3.32e-114Showinfo_outline
382053098..2053574PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9705_02316; phage(gi100031)2.33e-98Showinfo_outline
392053745..2055169Rac prophage; potassium transporter subunit; NCTC9705_023170.0Showinfo_outline
402055307..2056098PHAGE_Lactob_phiLdb_NC_022762: putative ParB nuclease; NCTC9705_02318; phage(gi571798069)6.94e-60Showinfo_outline
412056091..2057023PHAGE_Lactob_jlb1_NC_024206: hypothetical protein; NCTC9705_02319; phage(gi971848912)1.27e-76Showinfo_outline
422057214..2058293PHAGE_Burkho_BcepMigl_NC_019917: terminase small subunit; NCTC9705_02320; phage(gi431809885)9.70e-31Showinfo_outline
432058283..2059611PHAGE_Salmon_SSU5_NC_018843: putative terminase large subunit; NCTC9705_02321; phage(gi410491412)1.37e-18Showinfo_outline
442059630..2061066phage-associated protein, HI1409 family; NCTC9705_023220.0Showinfo_outline
452064636..2064649attR0.0Showinfo_outline

Region 3, total 52 CDS

#CDS PositionBLAST HitE-ValueSequence
12339114..2340133PHAGE_Synech_S_SM2_NC_015279: zinc-containing alcohol dehydrogenase superfamily protein; NCTC9705_02599; phage(gi326781942)2.69e-19Showinfo_outline
22339927..2339938attL0.0Showinfo_outline
3complement(2340321..2341601)PHAGE_Entero_YYZ_2008_NC_011356: putative integrase; Qin; phage prophage; NCTC9705_02600(gi209427727)0.0Showinfo_outline
4complement(2341636..2341872)PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage excisionase; NCTC9705_02601; phage(gi169257269)1.10e-20Showinfo_outline
5complement(2341960..2344431)PHAGE_Salmon_118970_sal3_NC_031940: baseplate hub subunit; NCTC9705_02602; phage(gi100107)2.95e-69Showinfo_outline
6complement(2344525..2344620)putative prophage protein; NCTC9705_026030.0Showinfo_outline
7complement(2344713..2344901)division inhibition protein; NCTC9705_026040.0Showinfo_outline
82345404..2345604Uncharacterised protein; NCTC9705_026060.0Showinfo_outline
9complement(2345573..2345938)PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; NCTC9705_02607; phage(gi966197735)3.46e-05Showinfo_outline
10complement(2345950..2346102)PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; NCTC9705_02608; phage(gi472340166)5.59e-12Showinfo_outline
11complement(2346271..2346678)PHAGE_Cronob_phiES15_NC_018454: putative transcriptional repressor DicA; NCTC9705_02609; phage(gi401817574)2.32e-43Showinfo_outline
122346759..2346986PHAGE_Pectob_ZF40_NC_019522: putative cro anti-repressor; NCTC9705_02610; phage(gi422936651)7.87e-12Showinfo_outline
132346970..2347491PHAGE_Pectob_ZF40_NC_019522: putative cII repressor; NCTC9705_02611; phage(gi422936652)1.97e-05Showinfo_outline
142347472..2348437PHAGE_Shigel_SfIV_NC_022749: replication protein; NCTC9705_02612; phage(gi557307567)2.95e-70Showinfo_outline
152348478..2348891PHAGE_Shigel_Stx_NC_029120: LygF; NCTC9705_02613; phage(gi985761265)5.25e-63Showinfo_outline
16complement(2349121..2349627)Uncharacterised protein; NCTC9705_026140.0Showinfo_outline
17complement(2349763..2350671)transcriptional regulator; NCTC9705_026150.0Showinfo_outline
182351677..2351928putative prophage protein; NCTC9705_026170.0Showinfo_outline
192352275..2353009PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9705_02618; phage(gi428782365)2.25e-59Showinfo_outline
202353062..2353331PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9705_02619; phage(gi428782365)9.48e-35Showinfo_outline
212353332..2353697PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; NCTC9705_02620; phage(gi985761276)1.54e-51Showinfo_outline
222353694..2354398PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; NCTC9705_02621; phage(gi169257244)1.51e-94Showinfo_outline
232354639..2355373putative AraC-type regulatory protein encoded in prophage CP-933H; NCTC9705_026220.0Showinfo_outline
242355552..2355767PHAGE_Entero_mEp460_NC_019716: porin; NCTC9705_02623; phage(gi428782370)2.30e-42Showinfo_outline
252355772..2356116PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9705_02624; phage(gi428782371)6.20e-47Showinfo_outline
26complement(2356082..2356354)ybl58; NCTC9705_026250.0Showinfo_outline
272356459..2356992PHAGE_Entero_mEp460_NC_019716: endolysin; Qin; phage prophage; NCTC9705_02626(gi428782372)1.83e-122Showinfo_outline
282356989..2357456PHAGE_Entero_mEp460_NC_019716: Rz lysis protein; NCTC9705_02627; phage(gi428782373)5.89e-109Showinfo_outline
292357444..2357596PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9705_02628; phage(gi428782374)8.77e-16Showinfo_outline
30complement(2357543..2357689)Uncharacterised protein; NCTC9705_026290.0Showinfo_outline
31complement(2357727..2357918)Uncharacterised protein; NCTC9705_026300.0Showinfo_outline
322358303..2358797PHAGE_Entero_mEp460_NC_019716: terminase small subunit; NCTC9705_02631; phage(gi428782317)1.58e-111Showinfo_outline
332358797..2360899PHAGE_Entero_mEp460_NC_019716: terminase large subunit; NCTC9705_02632; phage(gi428782318)0.0Showinfo_outline
342360896..2361108PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9705_02633; phage(gi428782319)9.56e-46Showinfo_outline
352361108..2362616PHAGE_Entero_mEp460_NC_019716: portal protein; NCTC9705_02634; phage(gi428782320)0.0Showinfo_outline
362362561..2364588PHAGE_Entero_mEp460_NC_019716: putative protease/scaffold protein; NCTC9705_02635; phage(gi428782321)0.0Showinfo_outline
372364675..2364998PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9705_02636; phage(gi428782322)8.50e-70Showinfo_outline
382364991..2365266PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9705_02637; phage(gi428782323)2.82e-62Showinfo_outline
392365278..2365868PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9705_02638; phage(gi428782324)3.32e-108Showinfo_outline
402365865..2366266PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9705_02639; phage(gi428782325)1.91e-94Showinfo_outline
412366277..2367020PHAGE_Entero_mEp460_NC_019716: major tail protein; NCTC9705_02640; phage(gi428782326)2.52e-173Showinfo_outline
422367081..2367467PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9705_02641; phage(gi428782327)3.22e-85Showinfo_outline
432367476..2367805PHAGE_Entero_mEp460_NC_019716: tail assembly protein; NCTC9705_02642; phage(gi428782328)6.79e-75Showinfo_outline
442367777..2370833PHAGE_Entero_mEp460_NC_019716: tail length tape measure protein; NCTC9705_02643; phage(gi428782329)0.0Showinfo_outline
452370833..2371162PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9705_02644; phage(gi428782330)2.54e-77Showinfo_outline
462371172..2371870PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC9705_02645; phage(gi428782331)3.12e-173Showinfo_outline
472372020..2372619PHAGE_Entero_lambda_NC_001416: tail component; NCTC9705_02646; phage(gi9626262)3.15e-141Showinfo_outline
482372616..2373164PHAGE_Entero_mEp460_NC_019716: tail assembly protein; NCTC9705_02647; phage(gi428782333)5.75e-126Showinfo_outline
492373225..2376638PHAGE_Entero_mEp460_NC_019716: host specificity protein; NCTC9705_02648; phage(gi428782334)0.0Showinfo_outline
502376708..2377307PHAGE_Entero_mEp460_NC_019716: Lom protein; NCTC9705_02649; phage(gi428782335)1.10e-137Showinfo_outline
512377372..2380332PHAGE_Entero_lambda_NC_001416: Tail fiber; NCTC9705_02650; phage(gi9626268)2.06e-111Showinfo_outline
522380607..2380618attR0.0Showinfo_outline

Region 4, total 64 CDS

#CDS PositionBLAST HitE-ValueSequence
12756532..2756543attL0.0Showinfo_outline
2complement(2760356..2760547)PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; NCTC9705_03012; phage(gi169936026)1.15e-21Showinfo_outline
32760578..2761075PHAGE_Entero_HK97_NC_002167: tail fiber; NCTC9705_03013; phage(gi9634179)2.34e-68Showinfo_outline
42761075..2761683PHAGE_Escher_pro483_NC_028943: putative tail fiber assembly protein; NCTC9705_03014; phage(gi971758533)1.45e-123Showinfo_outline
5complement(2761827..2762750)PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC9705_03015; phage(gi849250306)1.43e-68Showinfo_outline
6complement(2762754..2763338)PHAGE_Entero_SfI_NC_027339: tail protein; NCTC9705_03016; phage(gi849250305)1.84e-138Showinfo_outline
7complement(2763329..2764387)PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC9705_03017; phage(gi849250304)0.0Showinfo_outline
8complement(2764374..2764799)PHAGE_Entero_SfI_NC_027339: putative tail protein; NCTC9705_03018; phage(gi849250303)1.54e-98Showinfo_outline
9complement(2764799..2765347)PHAGE_Entero_SfI_NC_027339: tail protein; NCTC9705_03019; phage(gi849250302)6.34e-129Showinfo_outline
10complement(2765347..2766426)PHAGE_Entero_SfI_NC_027339: MuP protein; NCTC9705_03020; phage(gi849250301)0.0Showinfo_outline
11complement(2766423..2767751)PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC9705_03021; phage(gi849250300)0.0Showinfo_outline
12complement(2767812..2769647)PHAGE_Entero_SfI_NC_027339: tail protein; NCTC9705_03022; phage(gi849250299)0.0Showinfo_outline
13complement(2769789..2770058)PHAGE_Entero_SfI_NC_027339: putative bacteriophage protein; NCTC9705_03023; phage(gi849250298)1.20e-60Showinfo_outline
14complement(2770058..2770414)PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC9705_03024; phage(gi849250297)1.07e-84Showinfo_outline
15complement(2770414..2771910)PHAGE_Entero_SfI_NC_027339: tail sheath protein; NCTC9705_03025; phage(gi849250296)0.0Showinfo_outline
16complement(2771894..2772064)PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC9705_03026; phage(gi849250295)1.39e-33Showinfo_outline
17complement(2772073..2772633)PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC9705_03027; phage(gi849250294)5.18e-134Showinfo_outline
18complement(2772630..2773136)PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC9705_03028; phage(gi849250293)9.37e-116Showinfo_outline
19complement(2773111..2773521)PHAGE_Entero_SfI_NC_027339: putative phage head-tail adaptor; NCTC9705_03029; phage(gi849250292)5.99e-97Showinfo_outline
20complement(2773518..2773841)PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; NCTC9705_03030; phage(gi526244642)4.93e-71Showinfo_outline
21complement(2773844..2774044)PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC9705_03031; phage(gi849250291)1.31e-37Showinfo_outline
22complement(2774094..2775299)PHAGE_Entero_SfI_NC_027339: phage major capsid protein; NCTC9705_03032; phage(gi849250290)0.0Showinfo_outline
23complement(2775314..2775964)PHAGE_Entero_SfI_NC_027339: putative phage pro-head protease; NCTC9705_03033; phage(gi849250289)4.84e-155Showinfo_outline
24complement(2775942..2777183)PHAGE_Entero_SfI_NC_027339: portal protein; NCTC9705_03034; phage(gi849250288)0.0Showinfo_outline
25complement(2777183..2777365)PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC9705_03035; phage(gi849250287)1.87e-33Showinfo_outline
26complement(2777377..2779110)PHAGE_Entero_SfI_NC_027339: terminase large subunit; NCTC9705_03036; phage(gi849250286)0.0Showinfo_outline
27complement(2779107..2779601)PHAGE_Entero_SfI_NC_027339: terminase small subunit; NCTC9705_03037; phage(gi849250285)1.18e-116Showinfo_outline
28complement(2779727..2780077)PHAGE_Entero_SfI_NC_027339: HNH endonuclease; NCTC9705_03038; phage(gi849250284)3.46e-76Showinfo_outline
292780603..2780896PHAGE_Entero_lambda_NC_001416: Bor protein precursor; NCTC9705_03039; phage(gi19263395)3.18e-55Showinfo_outline
30complement(2780928..2781389)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9705_03040; phage(gi100031)3.38e-106Showinfo_outline
31complement(2781386..2781862)PHAGE_Entero_c_1_NC_019706: lysozyme; NCTC9705_03041; phage(gi428781798)1.61e-110Showinfo_outline
32complement(2781849..2782154)PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC9705_03042; phage(gi24371577)2.22e-47Showinfo_outline
332782383..2783186PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical bacteriophage protein; NCTC9705_03043; phage(gi109289966)2.91e-80Showinfo_outline
34complement(2783408..2784097)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; NCTC9705_03044; phage(gi169257244)3.70e-105Showinfo_outline
35complement(2784094..2784231)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; small; phage protein; NCTC9705_03045(gi435439319)1.07e-13Showinfo_outline
36complement(2784231..2784593)PHAGE_Salmon_118970_sal4_NC_030919: membrane-associated initiation of head vertex; NCTC9705_03046; phage(gi100034)6.68e-39Showinfo_outline
37complement(2784590..2784880)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC9705_03047; phage(gi435439317)4.44e-60Showinfo_outline
38complement(2784873..2785043)PHAGE_Escher_HK639_NC_016158: NinE; NCTC9705_03048; phage(gi356870663)3.80e-18Showinfo_outline
39complement(2785043..2785498)PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; DNA; phage base-flipping protein; NCTC9705_03049(gi401817579)8.11e-80Showinfo_outline
40complement(2785691..2786473)Uncharacterised protein; NCTC9705_030500.0Showinfo_outline
41complement(2786648..2786971)PHAGE_Haemop_Aaphi23_NC_004827: putative antirepressor protein Ant; NCTC9705_03051; phage(gi31544021)4.29e-07Showinfo_outline
42complement(2787083..2788609)PHAGE_Burkho_Bcep176_NC_007497: gp53; DLP12; phage prophage; NCTC9705_03052(gi77864678)6.05e-36Showinfo_outline
43complement(2788854..2789186)PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; NCTC9705_03053; phage(gi311992758)6.74e-10Showinfo_outline
44complement(2789254..2789556)PHAGE_Escher_PA28_NC_041935: replication and recombination DNA helicase; NCTC9705_03054; phage(gi100033)5.08e-59Showinfo_outline
45complement(2789553..2790254)PHAGE_Entero_SfI_NC_027339: replication protein P; NCTC9705_03055; phage(gi849250272)7.01e-171Showinfo_outline
46complement(2790251..2791255)PHAGE_Salmon_SEN34_NC_028699: replication protein O; NCTC9705_03056; phage(gi966201463)3.50e-144Showinfo_outline
47complement(2791267..2791806)PHAGE_Entero_phi80_NC_021190: CII decision making protein; NCTC9705_03057; phage(gi824479625)1.62e-85Showinfo_outline
48complement(2791876..2792106)PHAGE_Escher_HK639_NC_016158: cro; NCTC9705_03058; phage(gi356870651)3.16e-25Showinfo_outline
492792210..2792899PHAGE_Salmon_BTP1_NC_042346: RegA; NCTC9705_03059; phage(gi100039)3.51e-123Showinfo_outline
502793495..2793701PHAGE_Entero_HK225_NC_019717: Kil protein; NCTC9705_03060; phage(gi428782413)8.22e-37Showinfo_outline
512793779..2794075PHAGE_Entero_933W_NC_000924: host-nuclease inhibitor protein Gam; NCTC9705_03061; phage(gi9632481)4.18e-67Showinfo_outline
522794081..2794866PHAGE_Entero_SfI_NC_027339: phage recombination protein Bet; NCTC9705_03062; phage(gi849250259)0.0Showinfo_outline
532794863..2795543PHAGE_Stx2_c_1717_NC_011357: exonuclease; NCTC9705_03063; phage(gi209447136)5.00e-171Showinfo_outline
542795540..2795722PHAGE_Entero_VT2_Sakai_NC_000902: hypothetical protein; NCTC9705_03064; phage(gi9633408)2.50e-37Showinfo_outline
552795737..2795886PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC9705_03065; phage(gi100010)1.61e-28Showinfo_outline
562795963..2796178PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC9705_03066; phage(gi100017)4.37e-46Showinfo_outline
572796277..2796495PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC9705_03067; phage(gi849250254)1.04e-43Showinfo_outline
582796543..2796782PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC9705_03068; phage(gi849250253)2.18e-47Showinfo_outline
592796762..2796773attR0.0Showinfo_outline
602796922..2797158excisionase; NCTC9705_030690.0Showinfo_outline
612797148..2798290PHAGE_Entero_HK022_NC_002166: integrase; NCTC9705_03070; phage(gi9634144)2.27e-75Showinfo_outline
62complement(2798404..2799654)isocitrate dehydrogenase; NCTC9705_030710.0Showinfo_outline
632799826..2800479ribosomal large subunit pseudouridine synthase E (rRNA pseudouridylate synthase E); NCTC9705_030720.0Showinfo_outline
642800489..2800950PHAGE_Strept_YDN12_NC_028974: hydrolase; NCTC9705_03073; phage(gi971762176)1.07e-06Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 4734296 bps
Phages: 4
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download