Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGGK01000002.1

GenInfo (GI) Number: 0000000000

Download Results: UGGK01000002.1.PHASTER.zip

gi|00000000|ref|UGGK01000002.1| Escherichia coli strain NCTC4168 genome assembly, contig: 5435021, gc%: 50.60%

Download summary as .txt file: summary.txt file_download

Total: 13 prophage regions have been identified, of which 9 regions are intact, 2 regions are incomplete, and 2 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
135.1Kbquestionable803691921-127104 info_outlinePHAGE_Bacter_APSE_2_NC_011551(3)48.91%Show info_outline
29.8Kbincomplete20101214954-1224762 info_outlinePHAGE_Escher_RCS47_NC_042128(5)52.37%Show info_outline
337.5Kbintact107121228860-1266378 info_outlinePHAGE_Entero_P4_NC_001609(10)47.67%Show info_outline
455.3Kbintact130751860727-1916122 info_outlinePHAGE_Entero_DE3_NC_042057(17)51.20%Show info_outline
555.2Kbintact150512129836-2185100 info_outlinePHAGE_Escher_HK75_NC_016160(8)51.03%Show info_outline
644.9Kbintact150552426074-2470996 info_outlinePHAGE_Entero_P88_NC_026014(38)53.13%Show info_outline
722.4Kbquestionable80202589466-2611874 info_outlinePHAGE_Geobac_E2_NC_009552(3)50.64%Show info_outline
816.7Kbincomplete30172624485-2641266 info_outlinePHAGE_Entero_BP_4795_NC_004813(2)45.99%Show info_outline
942.9Kbintact110512638653-2681641 info_outlinePHAGE_Entero_DE3_NC_042057(20)50.63%Show info_outline
1056.9Kbintact140622870596-2927545 info_outlinePHAGE_Escher_HK639_NC_016158(7)47.51%Show info_outline
1140.8Kbintact150473037714-3078539 info_outlinePHAGE_Entero_cdtI_NC_009514(9)50.81%Show info_outline
1247.5Kbintact120643208572-3256088 info_outlinePHAGE_Entero_DE3_NC_042057(15)51.69%Show info_outline
1350.2Kbintact150563490234-3540468 info_outlinePHAGE_Entero_P88_NC_026014(27)53.13%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGGK01000002.1| Escherichia coli strain NCTC4168 genome assembly, contig: 5435021, gc%: 50.60%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 40 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(91921..92544)PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007: hypothetical protein; NCTC4168_00106; phage(gi564292623)3.55e-18Showinfo_outline
292802..94484PHAGE_Pseudo_PhiPA3_NC_028999: putative DNA ligase; NCTC4168_00107; phage(gi971764334)7.11e-24Showinfo_outline
3complement(94481..95098)inner membrane protein; NCTC4168_001080.0Showinfo_outline
495365..95379attL0.0Showinfo_outline
5complement(95391..96215)PHAGE_Riemer_RAP44_NC_019490: DNA-damage-inducible protein D; NCTC4168_00109; phage(gi418489887)9.72e-40Showinfo_outline
696594..96710Uncharacterised protein; NCTC4168_001100.0Showinfo_outline
7complement(96846..96956)Uncharacterised protein; NCTC4168_001110.0Showinfo_outline
8complement(96956..97243)PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC4168_00112; phage(gi557307568)4.19e-07Showinfo_outline
997503..97946prophage protein; NCTC4168_001130.0Showinfo_outline
10complement(97963..98340)Uncharacterised protein; NCTC4168_001140.0Showinfo_outline
11complement(98344..98826)PHAGE_Gordon_Kita_NC_031233: hypothetical protein; NCTC4168_00115; phage(gi100032)1.31e-37Showinfo_outline
12complement(99324..99425)Uncharacterised protein; NCTC4168_001160.0Showinfo_outline
13complement(100158..101063)PROPHAGE_Escher_MG1655: IS2 transposase TnpB; NCTC4168_00117; phage(gi16132094)0.0Showinfo_outline
14complement(101021..101386)PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; NCTC4168_00118; phage(gi17546153)9.81e-59Showinfo_outline
15complement(101483..103588)PHAGE_Shigel_Sf6_NC_005344: gene 13 protein; NCTC4168_00119; phage(gi41057291)1.80e-90Showinfo_outline
16complement(103588..105009)PHAGE_Bacter_APSE_2_NC_011551: injection gp20; NCTC4168_00120; phage(gi212499730)6.78e-154Showinfo_outline
17complement(105009..105686)PHAGE_Bacter_APSE_2_NC_011551: injection gp7; NCTC4168_00121; phage(gi212499729)7.76e-65Showinfo_outline
18complement(105680..106141)PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein; NCTC4168_00122; phage(gi212499728)3.86e-31Showinfo_outline
19complement(106158..106319)putative prophage protein; NCTC4168_001230.0Showinfo_outline
20106474..106487attL0.0Showinfo_outline
21complement(106922..107659)putative prophage protein; NCTC4168_001240.0Showinfo_outline
22complement(107649..107879)putative prophage protein; NCTC4168_001250.0Showinfo_outline
23complement(108056..110407)PHAGE_Pseudo_vB_PaeS_PAO1_Ab18_NC_026594: putative integrase; NCTC4168_00126; phage(gi764160521)1.30e-45Showinfo_outline
24complement(110394..110765)putative prophage protein; NCTC4168_001270.0Showinfo_outline
25complement(110758..111099)putative prophage protein; NCTC4168_001280.0Showinfo_outline
26complement(111110..111712)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC4168_00129; phage(gi18249870)6.84e-28Showinfo_outline
27complement(111705..111926)putative prophage protein; NCTC4168_001300.0Showinfo_outline
28complement(111923..112186)putative prophage protein; NCTC4168_001310.0Showinfo_outline
29complement(112183..112377)putative prophage protein; NCTC4168_001320.0Showinfo_outline
30113097..113110attR0.0Showinfo_outline
31complement(113431..113613)putative prophage protein; NCTC4168_001350.0Showinfo_outline
32complement(113606..114439)PHAGE_Escher_TL_2011c_NC_019442: putative antirepressor; NCTC4168_00136; phage(gi418487055)2.76e-28Showinfo_outline
33complement(114452..114883)putative prophage protein; NCTC4168_001370.0Showinfo_outline
34complement(114883..115086)putative prophage regulatory protein; NCTC4168_001380.0Showinfo_outline
35complement(115201..116166)Uncharacterised protein; NCTC4168_001390.0Showinfo_outline
36complement(116262..117521)PHAGE_Burkho_BcepC6B_NC_005887: putative integrase protein; NCTC4168_00140; phage(gi48697215)2.15e-51Showinfo_outline
37complement(117710..118573)putative alpha helix protein; NCTC4168_001410.0Showinfo_outline
38118700..119416ribonuclease PH; NCTC4168_001420.0Showinfo_outline
39119482..120123PHAGE_Prochl_P_SSM2_NC_006883: orotate phosphoribosyltransferase; NCTC4168_00143; phage(gi61805915)4.19e-05Showinfo_outline
40127104..127118attR0.0Showinfo_outline

Region 2, total 10 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1214954..1215592)PHAGE_Escher_RCS47_NC_042128: exonuclease A; NCTC4168_01238; phage(gi100018)8.47e-109Showinfo_outline
2complement(1215589..1216851)PHAGE_Escher_RCS47_NC_042128: hypothetical protein; NCTC4168_01239; phage(gi100019)1.79e-169Showinfo_outline
3complement(1216848..1217756)PHAGE_Escher_RCS47_NC_042128: hypothetical protein; NCTC4168_01240; phage(gi100020)1.72e-145Showinfo_outline
41217952..1218719PHAGE_Escher_RCS47_NC_042128: DNA helicase; NCTC4168_01241; phage(gi100021)1.34e-95Showinfo_outline
5complement(1218770..1219426)PHAGE_Escher_RCS47_NC_042128: hypothetical protein; NCTC4168_01242; phage(gi100100)1.05e-62Showinfo_outline
6complement(1219532..1222093)PHAGE_Bacter_B124_14_NC_016770: putative mismatch repair protein; NCTC4168_01243; phage(gi374671664)1.53e-12Showinfo_outline
7complement(1222090..1222323)Uncharacterised protein; NCTC4168_012440.0Showinfo_outline
81222380..1222724protein; NCTC4168_012450.0Showinfo_outline
9complement(1222763..1223191)molybdenum-pterin-binding-protein; NCTC4168_012460.0Showinfo_outline
10complement(1223434..1224762)PROPHAGE_Escher_MG1655: IS4 transposase; NCTC4168_01247; phage(gi16132099)0.0Showinfo_outline

Region 3, total 15 CDS

#CDS PositionBLAST HitE-ValueSequence
11228860..1228872attL0.0Showinfo_outline
21242837..1243319PHAGE_Staphy_StauST398_5_NC_023500: SsrA-binding protein; NCTC4168_01270; phage(gi588498309)3.43e-39Showinfo_outline
31243534..1243896tRNA0.0Showinfo_outline
41244081..1245289PHAGE_Entero_P4_NC_001609: integrase; NCTC4168_01272; phage(gi9627511)3.63e-77Showinfo_outline
51245293..1247251PHAGE_Clostr_CDMH1_NC_024144: putative signalling/NTPase protein; NCTC4168_01273; phage(gi640884941)1.07e-71Showinfo_outline
6complement(1247469..1248041)PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC4168_01274; phage(gi9627520)8.49e-137Showinfo_outline
7complement(1248115..1248615)PHAGE_Entero_P4_NC_001609: transactivation protein; NCTC4168_01275; phage(gi9627519)4.97e-117Showinfo_outline
8complement(1248612..1249346)PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC4168_01276; phage(gi9627518)1.99e-178Showinfo_outline
91249898..1250164PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC4168_01277; phage(gi9627517)1.12e-59Showinfo_outline
101250518..1250715PHAGE_Entero_P4_NC_001609: putative CI repressor; NCTC4168_01280; phage(gi9627516)7.03e-39Showinfo_outline
111250708..1250995PHAGE_Entero_P4_NC_001609: helper derepression protein; NCTC4168_01281; phage(gi9627515)6.92e-65Showinfo_outline
121250988..1251443PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC4168_01282; phage(gi9627514)2.00e-105Showinfo_outline
131251579..1251899PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC4168_01283; phage(gi9627513)1.19e-71Showinfo_outline
141251914..1254247PHAGE_Entero_P4_NC_001609: DNA primase; NCTC4168_01284; phage(gi9627512)0.0Showinfo_outline
151266378..1266390attR0.0Showinfo_outline

Region 4, total 80 CDS

#CDS PositionBLAST HitE-ValueSequence
11860727..1861653PHAGE_Bacill_G_NC_023719: gp245; NCTC4168_01854; phage(gi593777701)7.81e-28Showinfo_outline
21861658..1862389ABC transporter permease; NCTC4168_018550.0Showinfo_outline
3complement(1862370..1862477)putative inner membrane protein; NCTC4168_018560.0Showinfo_outline
4complement(1862537..1863184)MerR family transcriptional regulator; NCTC4168_018570.0Showinfo_outline
51863201..1863221attL0.0Showinfo_outline
6complement(1863259..1864545)PROPHAGE_Escher_Sakai: putative integrase; NCTC4168_01858; phage(gi15832267)0.0Showinfo_outline
7complement(1864579..1864833)PHAGE_Entero_BP_4795_NC_004813: putative excisionase; NCTC4168_01859; phage(gi157165987)8.49e-58Showinfo_outline
8complement(1864852..1864986)PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC4168_01860; phage(gi157165988)1.29e-24Showinfo_outline
9complement(1864990..1865232)PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC4168_01861; phage(gi157165989)1.53e-45Showinfo_outline
10complement(1865317..1866078)PHAGE_Shigel_POCJ13_NC_025434: EaA protein; NCTC4168_01862; phage(gi725949774)3.07e-134Showinfo_outline
11complement(1866089..1866352)PHAGE_Salmon_FSLSP030_NC_021779: hypothetical protein; NCTC4168_01863; phage(gi525972396)7.35e-42Showinfo_outline
12complement(1866354..1866920)PHAGE_Escher_RCS47_NC_042128: baseplate hub assembly protein; NCTC4168_01864; phage(gi100106)1.79e-56Showinfo_outline
13complement(1866907..1867161)PHAGE_Entero_EcP1_NC_019485: hypothetical protein; NCTC4168_01865; phage(gi418489320)2.60e-20Showinfo_outline
14complement(1867158..1867838)PHAGE_Escher_Av_05_NC_025830: hypothetical protein; similarities; phage with EA22 from lambda (modular protein involved in blocking host replication); NCTC4168_01866(gi730985108)2.61e-32Showinfo_outline
15complement(1867825..1868139)PHAGE_Salmon_II_E1_NC_010495: hypothetical protein; NCTC4168_01867; phage(gi170676326)2.21e-54Showinfo_outline
16complement(1868093..1868410)PHAGE_Entero_VT2_Sakai_NC_000902: hypothetical protein; NCTC4168_01868; phage(gi9633474)3.42e-53Showinfo_outline
17complement(1868400..1868648)PHAGE_Entero_P88_NC_026014: MarR family transcriptional regulator; NCTC4168_01869; phage(gi744692709)1.14e-15Showinfo_outline
18complement(1868659..1869240)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC4168_01870; phage(gi18249870)1.29e-89Showinfo_outline
19complement(1869246..1869428)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC4168_01871; phage(gi18249871)7.91e-16Showinfo_outline
20complement(1869623..1869721)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC4168_01872; phage(gi18249872)3.02e-14Showinfo_outline
211869969..1870229Uncharacterised protein; NCTC4168_018730.0Showinfo_outline
22complement(1870117..1870620)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC4168_01874; phage(gi18249874)7.53e-84Showinfo_outline
23complement(1870724..1871380)PHAGE_Entero_phiP27_NC_003356: putative lambda repressor; NCTC4168_01875; phage(gi18249875)1.93e-162Showinfo_outline
241871492..1871719PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC4168_01876; phage(gi18249876)1.37e-40Showinfo_outline
251871716..1872423PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC4168_01877; phage(gi18249878)2.07e-144Showinfo_outline
261873392..1873586Uncharacterised protein; NCTC4168_018800.0Showinfo_outline
271873583..1873807PHAGE_Entero_cdtI_NC_009514: hypothetical protein; NCTC4168_01881; phage(gi148609427)3.22e-22Showinfo_outline
281873804..1874103transcriptional regulator; NCTC4168_018820.0Showinfo_outline
291874100..1875092PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC4168_01883; phage(gi18249881)1.78e-87Showinfo_outline
301875103..1876002PHAGE_Entero_phiP27_NC_003356: putative replication protein DnaC; NCTC4168_01884; phage(gi18249882)8.25e-179Showinfo_outline
311875999..1877399PHAGE_Salmon_103203_sal5_NC_031946: rnaseH; NCTC4168_01885; phage(gi100048)4.44e-106Showinfo_outline
321877396..1877653PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC4168_01886; phage(gi18249884)2.86e-32Showinfo_outline
331877706..1878527PHAGE_Shigel_SfII_NC_021857: hypothetical protein; NCTC4168_01887; phage(gi526244681)0.0Showinfo_outline
341878534..1878695PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC4168_01888; phage(gi19549032)4.92e-31Showinfo_outline
351878714..1879097PHAGE_Shigel_Stx_NC_029120: antitermination protein Q; NCTC4168_01889; phage(gi985761278)3.88e-71Showinfo_outline
36complement(1879285..1880367)outer membrane porin protein NmpC; NCTC4168_018900.0Showinfo_outline
371880878..1881156PHAGE_Entero_phiP27_NC_003356: putative DNA methylase; NCTC4168_01891; phage(gi18249888)5.46e-52Showinfo_outline
381881197..1881272tRNA0.0Showinfo_outline
391881280..1881356tRNA0.0Showinfo_outline
401881370..1881446tRNA0.0Showinfo_outline
411881935..1883788PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; NCTC4168_01896; phage(gi209427766)0.0Showinfo_outline
421883938..1884153PHAGE_Shigel_Ss_VASD_NC_028685: holin lysis protein S; NCTC4168_01897; phage(gi966200466)1.22e-45Showinfo_outline
431884158..1884964PHAGE_Stx2_c_86_NC_008464: hypothetical protein; NCTC4168_01898; phage(gi116221997)0.0Showinfo_outline
44complement(1884974..1885288)PHAGE_Stx2_c_86_NC_008464: hypothetical protein; NCTC4168_01899; phage(gi116221998)1.08e-73Showinfo_outline
451885417..1885950PHAGE_Stx2_c_86_NC_008464: lysozyme protein R; Qin; phage prophage; NCTC4168_01900(gi116221999)1.33e-126Showinfo_outline
461886143..1886289Uncharacterised protein; NCTC4168_019010.0Showinfo_outline
471886304..1886435PHAGE_Escher_phi191_NC_028660: hypothetical protein; NCTC4168_01902; phage(gi966198023)1.22e-14Showinfo_outline
481886447..1886905PHAGE_Entero_BP_4795_NC_004813: putative endopeptidase Rz; NCTC4168_01903; phage(gi157166036)2.27e-88Showinfo_outline
491887256..1887396Uncharacterised protein; NCTC4168_019040.0Showinfo_outline
501888102..1888650PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC4168_01905; phage(gi100035)3.01e-65Showinfo_outline
511888622..1890550PHAGE_Entero_DE3_NC_042057: DNA polymerase; terminase; phage large subunit; NCTC4168_01906(gi100036)0.0Showinfo_outline
521890534..1890740PHAGE_Entero_HK225_NC_019717: head-tail connector gpW; NCTC4168_01907; phage(gi428782379)1.09e-17Showinfo_outline
531890737..1892329PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_01908; phage(gi100038)0.0Showinfo_outline
541892319..1893824PHAGE_Entero_DE3_NC_042057: RegA; NCTC4168_01909; phage(gi100039)4.67e-133Showinfo_outline
551893861..1894208PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC4168_01910; phage(gi100040)4.12e-29Showinfo_outline
561894266..1895294PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC4168_01911; phage(gi100041)8.01e-148Showinfo_outline
571895346..1895729PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage accessory DNA packaging protein; Lambda FI homolog; NCTC4168_01912; phage(gi169257229)3.27e-08Showinfo_outline
581895722..1896075PHAGE_Entero_DE3_NC_042057: RNA polymerase binding protein; NCTC4168_01913; phage(gi100043)2.09e-53Showinfo_outline
591896090..1896665PHAGE_Entero_DE3_NC_042057: ssDNA binding protein; NCTC4168_01914; phage(gi100044)2.86e-64Showinfo_outline
601896662..1897057PHAGE_Entero_DE3_NC_042057: loader of DNA helicase; NCTC4168_01915; phage(gi100045)2.21e-73Showinfo_outline
611897065..1897817PHAGE_Entero_DE3_NC_042057: late promoter transcription; NCTC4168_01916; phage(gi100046)7.88e-139Showinfo_outline
621897831..1898262PHAGE_Entero_DE3_NC_042057: dsDNA binding protein; NCTC4168_01917; phage(gi100047)4.13e-59Showinfo_outline
631898289..1898702PHAGE_Entero_DE3_NC_042057: rnaseH; NCTC4168_01918; phage(gi100048)3.60e-59Showinfo_outline
641898683..1901256PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC4168_01919; phage(gi100049)0.0Showinfo_outline
651901253..1901582PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_01920; phage(gi100050)4.12e-59Showinfo_outline
661901582..1902280PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_01921; phage(gi100051)2.34e-136Showinfo_outline
671902291..1903034PHAGE_Entero_BP_4795_NC_004813: putative tail fiber component; NCTC4168_01922; phage(gi157166055)0.0Showinfo_outline
681903031..1903612PHAGE_Stx2_c_1717_NC_011357: putative tail component; NCTC4168_01923; phage(gi209447195)1.08e-134Showinfo_outline
691903956..1906490PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC4168_01924; phage(gi100054)0.0Showinfo_outline
70complement(1906501..1907829)PROPHAGE_Escher_MG1655: IS4 transposase; NCTC4168_01925; phage(gi16132099)0.0Showinfo_outline
711907972..1908784PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC4168_01926; phage(gi100054)1.04e-110Showinfo_outline
721908852..1909451PHAGE_Entero_mEp460_NC_019716: Lom protein; NCTC4168_01927; phage(gi428782335)1.04e-125Showinfo_outline
731909516..1910241PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_01928; phage(gi100056)6.92e-77Showinfo_outline
741910642..1911895PHAGE_Entero_JenP1_NC_029028: tail fiber protein; NCTC4168_01929; phage(gi971767090)0.0Showinfo_outline
751911895..1912176PHAGE_Entero_JenP1_NC_029028: hypothetical protein; NCTC4168_01930; phage(gi971767091)2.02e-21Showinfo_outline
761912186..1913226PHAGE_Entero_mEp460_NC_019716: side tail fiber protein; NCTC4168_01931; phage(gi428782336)8.45e-52Showinfo_outline
771913269..1913556PHAGE_Halomo_phiHAP_1_NC_010342: hypothetical protein; NCTC4168_01932; phage(gi167832364)7.70e-08Showinfo_outline
78complement(1913674..1913922)PHAGE_Entero_YYZ_2008_NC_011356: putative DNA damage-inducible protein; NCTC4168_01933; phage(gi209427797)1.10e-52Showinfo_outline
791914148..1914168attR0.0Showinfo_outline
801914437..1916122PHAGE_Entero_YYZ_2008_NC_011356: putative 2-component sensor protein YehU; NCTC4168_01934; phage(gi209427798)0.0Showinfo_outline

Region 5, total 60 CDS

#CDS PositionBLAST HitE-ValueSequence
12129836..2129847attL0.0Showinfo_outline
2complement(2137388..2138431)PROPHAGE_Escher_CFT073: prophage P4 integrase; NCTC4168_02134; phage(gi26248270)0.0Showinfo_outline
3complement(2138812..2138887)tRNA0.0Showinfo_outline
4complement(2138988..2139785)DgsA anti-repressor MtfA; NCTC4168_021360.0Showinfo_outline
52139879..2139968tRNA0.0Showinfo_outline
62139938..2139968attL0.0Showinfo_outline
7complement(2140021..2141046)PHAGE_Salmon_118970_sal3_NC_031940: baseplate subunit; NCTC4168_02138; phage(gi100105)4.44e-129Showinfo_outline
8complement(2141046..2141249)PHAGE_Pectob_ZF40_NC_019522: hypothetical protein; NCTC4168_02139; phage(gi422936643)3.84e-07Showinfo_outline
9complement(2141308..2143782)PHAGE_Salmon_118970_sal3_NC_031940: baseplate hub subunit; NCTC4168_02140; phage(gi100107)1.32e-69Showinfo_outline
10complement(2143875..2144066)putative prophage protein; NCTC4168_021410.0Showinfo_outline
11complement(2144063..2144251)cell division inhibition protein; NCTC4168_021420.0Showinfo_outline
12complement(2144801..2145019)putative prophage protein; NCTC4168_021440.0Showinfo_outline
13complement(2145091..2145447)Uncharacterised protein; NCTC4168_021450.0Showinfo_outline
14complement(2145749..2146168)PHAGE_Escher_HK75_NC_016160: cI repressor; NCTC4168_02146; phage(gi356870714)3.51e-25Showinfo_outline
152146248..2146502PHAGE_Escher_HK75_NC_016160: regulatory protein cro; NCTC4168_02147; phage(gi356870715)3.76e-24Showinfo_outline
162146499..2146924PHAGE_Entero_mEp237_NC_019704: CII protein; NCTC4168_02148; phage(gi435439306)1.28e-06Showinfo_outline
172146993..2148030PHAGE_Escher_TL_2011b_NC_019445: hypothetical protein; NCTC4168_02149; phage(gi418487646)1.66e-54Showinfo_outline
182148023..2148484PHAGE_Escher_HK639_NC_016158: replication protein 14; NCTC4168_02150; phage(gi356870655)3.89e-34Showinfo_outline
192148518..2149288PHAGE_Shigel_Stx_NC_029120: hypothetical protein; NCTC4168_02151; phage(gi985761264)4.96e-101Showinfo_outline
202149304..2149699PHAGE_Shigel_Stx_NC_029120: LygF; NCTC4168_02152; phage(gi985761265)1.52e-52Showinfo_outline
212149874..2150539putative prophage protein; NCTC4168_021530.0Showinfo_outline
222151856..2152734Type-2 restriction enzyme NgoMIV; NCTC4168_021550.0Showinfo_outline
232153113..2154240PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC4168_02156; phage(gi557307571)3.93e-109Showinfo_outline
242154241..2154606PHAGE_Escher_HK75_NC_016160: RusA-like protein; NCTC4168_02157; phage(gi356870726)2.32e-50Showinfo_outline
252154603..2155292PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; NCTC4168_02158; phage(gi169257244)8.36e-100Showinfo_outline
262155503..2155578tRNA0.0Showinfo_outline
272155586..2155662tRNA0.0Showinfo_outline
282155676..2155752tRNA0.0Showinfo_outline
29complement(2156044..2156379)PHAGE_Stx2_c_1717_NC_011357: hypothetical protein; NCTC4168_02163; phage(gi209447168)2.66e-54Showinfo_outline
302156640..2156828PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; NCTC4168_02164; phage(gi209427766)9.29e-34Showinfo_outline
312156825..2156986PHAGE_Stx2_c_86_NC_008464: hypothetical protein; NCTC4168_02165; phage(gi116221995)1.09e-19Showinfo_outline
322157136..2157351PHAGE_Entero_VT2phi_272_NC_028656: holin; NCTC4168_02166; phage(gi966197762)3.03e-45Showinfo_outline
332157356..2157706PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC4168_02167; phage(gi428782371)7.46e-52Showinfo_outline
342157770..2158303PHAGE_Entero_mEp460_NC_019716: endolysin; Qin; phage prophage; NCTC4168_02168(gi428782372)1.33e-123Showinfo_outline
352158300..2158764PHAGE_Entero_cdtI_NC_009514: lysin; NCTC4168_02169; phage(gi148609441)2.68e-88Showinfo_outline
362158807..2159157PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC4168_02170; phage(gi18249898)5.87e-71Showinfo_outline
372159305..2159787PHAGE_Entero_mEp235_NC_019708: terminase small subunit; NCTC4168_02171; phage(gi428781811)4.77e-84Showinfo_outline
382159787..2161544PHAGE_Entero_mEp235_NC_019708: terminase large subunit; NCTC4168_02172; phage(gi428781812)0.0Showinfo_outline
392161692..2162780PHAGE_Entero_SfV_NC_003444: portal protein; NCTC4168_02173; phage(gi19548993)0.0Showinfo_outline
402162777..2162917PHAGE_Entero_SfV_NC_003444: portal protein; NCTC4168_02174; phage(gi19548993)2.03e-16Showinfo_outline
412162910..2163509PHAGE_Entero_SfV_NC_003444: capsid protease; NCTC4168_02175; phage(gi19548994)3.84e-117Showinfo_outline
422163524..2164741PHAGE_Entero_SfV_NC_003444: capsid; NCTC4168_02176; phage(gi19548995)0.0Showinfo_outline
432164818..2165135PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC4168_02177; phage(gi100083)3.64e-26Showinfo_outline
442165144..2165482PHAGE_Escher_HK75_NC_016160: head-tail adaptor protein; NCTC4168_02178; phage(gi356870684)6.79e-42Showinfo_outline
452165482..2165928PHAGE_Escher_HK75_NC_016160: hypothetical protein; NCTC4168_02179; phage(gi356870685)1.74e-83Showinfo_outline
462165925..2166269PHAGE_Cronob_ENT39118_NC_019934: putative minor tail protein; NCTC4168_02180; phage(gi431811079)1.42e-40Showinfo_outline
472166328..2167032PHAGE_Escher_HK75_NC_016160: major tail protein; NCTC4168_02181; phage(gi356870687)1.46e-122Showinfo_outline
482167047..2167418PHAGE_Stx2_c_1717_NC_011357: putative tail assembly chaperone; NCTC4168_02182; phage(gi209447188)5.37e-54Showinfo_outline
492167442..2167720PHAGE_Escher_HK75_NC_016160: phage tail protein; NCTC4168_02183; phage(gi356870689)6.81e-37Showinfo_outline
502167767..2168219PHAGE_Escher_HK75_NC_016160: tail length tape measure protein; NCTC4168_02184; phage(gi356870691)2.22e-56Showinfo_outline
512168183..2170993PHAGE_Entero_BP_4795_NC_004813: putative tail component; NCTC4168_02185; phage(gi157166052)0.0Showinfo_outline
522170986..2171327PHAGE_Stx2_c_1717_NC_011357: minor tail protein; NCTC4168_02186; phage(gi209447191)9.27e-51Showinfo_outline
532171327..2172025PHAGE_Entero_lambda_NC_001416: tail component; NCTC4168_02187; phage(gi9626261)1.55e-163Showinfo_outline
542172175..2172774PHAGE_Entero_mEp460_NC_019716: tail fiber component; NCTC4168_02188; phage(gi428782332)8.44e-148Showinfo_outline
552172771..2173319PHAGE_Entero_cdtI_NC_009514: putative tail component; NCTC4168_02189; phage(gi148609399)1.09e-122Showinfo_outline
562173380..2177078PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; NCTC4168_02190; phage(gi148609400)0.0Showinfo_outline
572177146..2177745PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; NCTC4168_02191; phage(gi148609401)1.23e-136Showinfo_outline
582177810..2180839PHAGE_Entero_JenK1_NC_029021: tail fiber protein; NCTC4168_02192; phage(gi971766395)5.00e-113Showinfo_outline
592181801..2181831attR0.0Showinfo_outline
602185100..2185111attR0.0Showinfo_outline

Region 6, total 57 CDS

#CDS PositionBLAST HitE-ValueSequence
12426074..2426085attL0.0Showinfo_outline
22431192..2431491PHAGE_Geobac_E3_NC_029073: hypothetical protein; NCTC4168_02468; phage(gi985758341)1.54e-18Showinfo_outline
3complement(2431800..2431940)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC4168_02469; phage(gi744692752)6.37e-26Showinfo_outline
4complement(2432132..2432392)PHAGE_Yersin_L_413C_NC_004745: Ogr; NCTC4168_02470; phage(gi30065732)9.50e-09Showinfo_outline
5complement(2432433..2433542)PHAGE_Entero_P88_NC_026014: gene D protein; NCTC4168_02471; phage(gi744692751)0.0Showinfo_outline
62433699..2434883PHAGE_Entero_P88_NC_026014: tail sheath monomer; NCTC4168_02472; phage(gi744692749)0.0Showinfo_outline
72434883..2435395PHAGE_Entero_P88_NC_026014: major tail tube protein; NCTC4168_02473; phage(gi744692748)8.40e-121Showinfo_outline
82435450..2435815PHAGE_Entero_P88_NC_026014: tail protein; NCTC4168_02474; phage(gi744692747)1.58e-80Showinfo_outline
92435966..2438593PHAGE_Entero_P88_NC_026014: tail tape measure protein; NCTC4168_02475; phage(gi744692745)0.0Showinfo_outline
102438782..2439270PHAGE_Entero_P88_NC_026014: tail protein; NCTC4168_02476; phage(gi744692744)2.81e-117Showinfo_outline
11complement(2439297..2439896)PHAGE_Entero_P88_NC_026014: DNA invertase; NCTC4168_02477; phage(gi744692743)1.49e-101Showinfo_outline
122439912..2440442PHAGE_Escher_pro483_NC_028943: tail fiber protein; NCTC4168_02478; phage(gi971758534)1.06e-45Showinfo_outline
13complement(2440449..2441063)PHAGE_Entero_HK106_NC_019768: tail fiber assembly protein; NCTC4168_02479; phage(gi428783304)2.21e-81Showinfo_outline
14complement(2441063..2441641)PHAGE_Escher_pro483_NC_028943: tail fiber protein; NCTC4168_02480; phage(gi971758534)2.58e-44Showinfo_outline
15complement(2441681..2441908)phage Tail Collar domain protein; NCTC4168_024810.0Showinfo_outline
16complement(2441932..2443128)PHAGE_Entero_P88_NC_026014: tail fiber protein; NCTC4168_02482; phage(gi744692739)8.66e-125Showinfo_outline
17complement(2443125..2443733)PHAGE_Entero_P88_NC_026014: tail protein; NCTC4168_02483; phage(gi744692738)8.93e-92Showinfo_outline
18complement(2443726..2444622)PHAGE_Entero_P88_NC_026014: baseplate assembly protein J; NCTC4168_02484; phage(gi744692737)0.0Showinfo_outline
19complement(2444626..2444976)PHAGE_Entero_P88_NC_026014: lysozyme family baseplate assembly protein; NCTC4168_02485; phage(gi744692736)1.54e-79Showinfo_outline
20complement(2444973..2445554)PHAGE_Entero_P88_NC_026014: baseplate assembly protein V; NCTC4168_02486; phage(gi744692735)1.50e-137Showinfo_outline
21complement(2445551..2446195)PHAGE_Entero_P88_NC_026014: tail protein; NCTC4168_02487; phage(gi744692734)1.24e-151Showinfo_outline
22complement(2446179..2446646)PHAGE_Entero_P88_NC_026014: tail completion protein; NCTC4168_02488; phage(gi744692733)4.06e-109Showinfo_outline
23complement(2446670..2448328)PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; NCTC4168_02489; phage(gi209427766)0.0Showinfo_outline
24complement(2448688..2449083)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC4168_02490; phage(gi744692732)2.85e-85Showinfo_outline
25complement(2449080..2449472)PHAGE_Entero_P88_NC_026014: endolysin; NCTC4168_02491; phage(gi744692731)5.71e-92Showinfo_outline
26complement(2449469..2449792)PHAGE_Entero_P88_NC_026014: holin; NCTC4168_02492; phage(gi744692730)7.68e-68Showinfo_outline
27complement(2449795..2449995)PHAGE_Entero_P88_NC_026014: tail component protein; NCTC4168_02493; phage(gi744692729)6.35e-43Showinfo_outline
28complement(2449995..2450489)PHAGE_Entero_P88_NC_026014: head completion-stabilization protein; NCTC4168_02494; phage(gi744692728)6.53e-112Showinfo_outline
29complement(2450591..2451391)PHAGE_Entero_P88_NC_026014: terminase endonuclease subunit; NCTC4168_02495; phage(gi744692727)0.0Showinfo_outline
30complement(2451437..2452489)PHAGE_Entero_P88_NC_026014: major capsid protein; NCTC4168_02496; phage(gi744692726)0.0Showinfo_outline
31complement(2452513..2453349)PHAGE_Entero_P88_NC_026014: capsid scaffolding protein; NCTC4168_02497; phage(gi744692725)0.0Showinfo_outline
322453504..2455255PHAGE_Entero_P88_NC_026014: terminase ATPase subunit; NCTC4168_02498; phage(gi744692724)0.0Showinfo_outline
332455255..2456301PHAGE_Entero_P88_NC_026014: PBSX family portal protein; NCTC4168_02499; phage(gi744692723)0.0Showinfo_outline
34complement(2456813..2457076)PHAGE_Salmon_FSLSP030_NC_021779: hypothetical protein; NCTC4168_02500; phage(gi525972396)7.35e-42Showinfo_outline
35complement(2457078..2457509)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC4168_02501; phage(gi744692720)2.34e-27Showinfo_outline
36complement(2457529..2457843)PHAGE_Entero_P88_NC_026014: chromosome partitioning protein; NCTC4168_02502; phage(gi744692718)1.82e-26Showinfo_outline
37complement(2457848..2458807)PHAGE_Entero_P88_NC_026014: recombinase; NCTC4168_02503; phage(gi744692717)0.0Showinfo_outline
38complement(2458884..2461706)PHAGE_Entero_P88_NC_026014: replication protein; NCTC4168_02504; phage(gi744692716)0.0Showinfo_outline
39complement(2461713..2462078)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC4168_02505; phage(gi744692715)3.07e-81Showinfo_outline
40complement(2462749..2463579)PHAGE_Entero_P88_NC_026014: putative SPFH domain protein; NCTC4168_02508; phage(gi744692712)0.0Showinfo_outline
41complement(2463576..2463779)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC4168_02509; phage(gi744692711)1.53e-38Showinfo_outline
42complement(2463790..2464086)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC4168_02510; phage(gi744692710)1.05e-47Showinfo_outline
43complement(2464083..2464328)PHAGE_Entero_P88_NC_026014: MarR family transcriptional regulator; NCTC4168_02511; phage(gi744692709)2.04e-53Showinfo_outline
44complement(2464518..2464835)Uncharacterised protein; NCTC4168_025120.0Showinfo_outline
45complement(2464926..2465039)PHAGE_Entero_P88_NC_026014: membrane protein; NCTC4168_02513; phage(gi744692707)9.35e-15Showinfo_outline
46complement(2465036..2465278)PHAGE_Entero_P88_NC_026014: DNA modification methyltransferase; NCTC4168_02514; phage(gi744692706)1.45e-50Showinfo_outline
47complement(2465290..2465568)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC4168_02515; phage(gi744692705)1.00e-48Showinfo_outline
48complement(2465579..2465917)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC4168_02516; phage(gi744692704)1.23e-68Showinfo_outline
49complement(2465932..2466210)DNA-binding protein; NCTC4168_025170.0Showinfo_outline
502466307..2466615PHAGE_Salmon_SEN5_NC_028701: repressor protein C; NCTC4168_02518; phage(gi966201589)5.30e-30Showinfo_outline
512466396..2466407attR0.0Showinfo_outline
522466704..2467642PHAGE_Salmon_SEN5_NC_028701: integrase; NCTC4168_02519; phage(gi966201588)2.27e-102Showinfo_outline
532467645..2468007Uncharacterised protein; NCTC4168_025200.0Showinfo_outline
542468007..2468444Uncharacterised protein; NCTC4168_025210.0Showinfo_outline
552468653..2469633Vitamin B12 ABC transporter, permease protein; NCTC4168_025220.0Showinfo_outline
562469696..2470247vitamin B12 transport periplasmic protein (putative glutathione peroxidase); NCTC4168_025230.0Showinfo_outline
572470247..2470996PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC4168_02524; phage(gi371496158)3.29e-09Showinfo_outline

Region 7, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
12589466..2589477attL0.0Showinfo_outline
22589796..2591013PHAGE_Salmon_vB_SosS_Oslo_NC_018279: integrase; NCTC4168_02637; phage(gi399528791)2.63e-65Showinfo_outline
32591634..2592695putative prophage protein; NCTC4168_026380.0Showinfo_outline
42593377..2593676putative prophage protein; NCTC4168_026400.0Showinfo_outline
52593673..2595421PHAGE_Entero_P4_NC_001609: DNA primase; phage; phage DNA primase; NCTC4168_02641(gi9627512)1.85e-106Showinfo_outline
62595711..2595968putative prophage protein; NCTC4168_026420.0Showinfo_outline
72595965..2596375PHAGE_Staphy_StB20_like_NC_028821: single-stranded DNA-binding protein ssb; NCTC4168_02643; phage(gi971746504)1.91e-11Showinfo_outline
82596386..2596643PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC4168_02644; phage(gi557307568)3.78e-06Showinfo_outline
92596634..2596894putative prophage protein; NCTC4168_026450.0Showinfo_outline
102597178..2598347PHAGE_Salmon_ST64B_NC_004313: Major capsid protein precursor; NCTC4168_02646; phage(gi23505451)1.77e-65Showinfo_outline
112598385..2598762PHAGE_Entero_EFRM31_NC_015270: prohead protease; NCTC4168_02647; phage(gi327198114)1.91e-23Showinfo_outline
122599017..2600177PHAGE_Psychr_Psymv2_NC_023734: phage portal protein, HK97 family; NCTC4168_02648; phage(gi593779762)2.22e-49Showinfo_outline
132600174..2600512PHAGE_Entero_HK97_NC_002167: putative head-tail adaptor; NCTC4168_02649; phage(gi9634168)3.39e-37Showinfo_outline
142600509..2600805PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; NCTC4168_02650; phage(gi526244642)3.08e-08Showinfo_outline
152600805..2601245PHAGE_Burkho_phiE125_NC_003309: putative class I holin; NCTC4168_02651; phage(gi17975232)2.45e-16Showinfo_outline
162601534..2601890PHAGE_Psychr_Psymv2_NC_023734: terminase small subunit; NCTC4168_02652; phage(gi593779760)3.33e-16Showinfo_outline
172601874..2603535PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; NCTC4168_02653; phage(gi100002)1.72e-99Showinfo_outline
182603549..2603830putative prophage protein; NCTC4168_026540.0Showinfo_outline
19complement(2604324..2604488)transporter; NCTC4168_026550.0Showinfo_outline
202604900..2605265multidrug resistance protein; NCTC4168_026560.0Showinfo_outline
212605252..2605581PHAGE_Acinet_ZZ1_NC_018087: putative quaternary ammonium compound-resistance protein qacE; NCTC4168_02657; phage(gi392973036)2.40e-07Showinfo_outline
222611874..2611885attR0.0Showinfo_outline

Region 8, total 19 CDS

#CDS PositionBLAST HitE-ValueSequence
12624485..2625504PHAGE_Synech_S_SM2_NC_015279: zinc-containing alcohol dehydrogenase superfamily protein; NCTC4168_02676; phage(gi326781942)8.41e-19Showinfo_outline
22625465..2625477attL0.0Showinfo_outline
3complement(2625692..2626972)PHAGE_Entero_YYZ_2008_NC_011356: putative integrase; Qin; phage prophage; NCTC4168_02677(gi209427727)0.0Showinfo_outline
4complement(2627007..2627243)PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage excisionase; NCTC4168_02678; phage(gi169257269)1.10e-20Showinfo_outline
5complement(2627331..2629802)PHAGE_Salmon_118970_sal3_NC_031940: baseplate hub subunit; NCTC4168_02679; phage(gi100107)2.56e-69Showinfo_outline
6complement(2629895..2630086)putative prophage protein; NCTC4168_026800.0Showinfo_outline
7complement(2630083..2630271)division inhibition protein; NCTC4168_026810.0Showinfo_outline
82630672..2630836Uncharacterised protein; NCTC4168_026830.0Showinfo_outline
9complement(2630840..2631058)putative prophage protein; NCTC4168_026840.0Showinfo_outline
10complement(2631088..2631216)PHAGE_Entero_vB_EcoP_ACG_C91_NC_019403: hypothetical protein; NCTC4168_02685; phage(gi414087578)9.88e-05Showinfo_outline
11complement(2631218..2631373)PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; NCTC4168_02686; phage(gi472340166)5.92e-12Showinfo_outline
122631695..2632153PHAGE_Hypert_2_NC_014321: IS element Dka2 orfA; NCTC4168_02688; phage(gi300116744)1.32e-17Showinfo_outline
13complement(2632242..2632658)PHAGE_Cronob_phiES15_NC_018454: putative transcriptional repressor DicA; NCTC4168_02689; phage(gi401817574)9.00e-41Showinfo_outline
142632742..2632972PHAGE_Pectob_ZF40_NC_019522: putative cro anti-repressor; NCTC4168_02690; phage(gi422936651)9.10e-12Showinfo_outline
152632956..2633477YdfX; NCTC4168_026910.0Showinfo_outline
162633458..2634423PHAGE_Shigel_SfIV_NC_022749: replication protein; NCTC4168_02692; phage(gi557307567)4.06e-69Showinfo_outline
172634464..2634886PHAGE_Shigel_Stx_NC_029120: LygF; NCTC4168_02693; phage(gi985761265)6.03e-62Showinfo_outline
182634883..2635239PHAGE_Pectob_ZF40_NC_019522: putative methylase; NCTC4168_02694; phage(gi422936660)2.67e-49Showinfo_outline
192641266..2641278attR0.0Showinfo_outline

Region 9, total 51 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(2638653..2638985)Qin prophage protein; NCTC4168_026980.0Showinfo_outline
22639518..2639757antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor of relBEF; NCTC4168_026990.0Showinfo_outline
32639757..2640044toxin of the RelE-RelB toxin-antitoxin system; NCTC4168_027000.0Showinfo_outline
42640116..2640271PHAGE_Entero_933W_NC_000924: host killer protein; NCTC4168_02701; phage(gi9632541)1.17e-25Showinfo_outline
52640488..2640739putative prophage protein; NCTC4168_027020.0Showinfo_outline
62641086..2642135PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC4168_02703; phage(gi428782365)2.80e-140Showinfo_outline
72642149..2642901PHAGE_Entero_SfV_NC_003444: antitermination protein Q; NCTC4168_02704; phage(gi19549033)3.43e-178Showinfo_outline
8complement(2643323..2643535)cold shock-like protein CspF; NCTC4168_027050.0Showinfo_outline
9complement(2644653..2644772)Uncharacterised protein; NCTC4168_027070.0Showinfo_outline
102644814..2645020PHAGE_Entero_mEp460_NC_019716: porin; NCTC4168_02708; phage(gi428782370)2.64e-40Showinfo_outline
112645025..2645336PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC4168_02709; phage(gi428782371)5.21e-40Showinfo_outline
122645333..2645866PHAGE_Entero_mEp460_NC_019716: endolysin; NCTC4168_02710; phage(gi428782372)1.35e-121Showinfo_outline
132645863..2646360PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; NCTC4168_02711; phage(gi16765210)1.80e-62Showinfo_outline
142647608..2647781GnsA/GnsB family transcriptional regulator; NCTC4168_027130.0Showinfo_outline
15complement(2647933..2648343)PHAGE_Entero_DE3_NC_042057: replication and recombination DNA helicase; NCTC4168_02714; phage(gi100033)7.27e-75Showinfo_outline
162649023..2649568PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC4168_02715; phage(gi100035)1.13e-129Showinfo_outline
172649543..2651468PHAGE_Entero_DE3_NC_042057: DNA polymerase; NCTC4168_02716; phage(gi100036)0.0Showinfo_outline
182651465..2651671PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_02717; phage(gi100037)4.55e-43Showinfo_outline
192651668..2653269PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_02718; phage(gi100038)0.0Showinfo_outline
202653250..2654569PHAGE_Entero_DE3_NC_042057: RegA; NCTC4168_02719; phage(gi100039)0.0Showinfo_outline
212654579..2654911PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC4168_02720; phage(gi100040)7.06e-73Showinfo_outline
222654967..2655992PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC4168_02721; phage(gi100041)0.0Showinfo_outline
232656034..2656432PHAGE_Entero_DE3_NC_042057: sliding clamp DNA polymerase; NCTC4168_02722; phage(gi100042)1.56e-82Showinfo_outline
242656444..2656797PHAGE_Entero_DE3_NC_042057: RNA polymerase binding protein; NCTC4168_02723; phage(gi100043)3.09e-79Showinfo_outline
252656809..2657387PHAGE_Entero_DE3_NC_042057: ssDNA binding protein; NCTC4168_02724; phage(gi100044)1.01e-131Showinfo_outline
262657384..2657779PHAGE_Entero_DE3_NC_042057: loader of DNA helicase; NCTC4168_02725; phage(gi100045)1.05e-88Showinfo_outline
272657787..2658527PHAGE_Entero_DE3_NC_042057: late promoter transcription; NCTC4168_02726; phage(gi100046)2.56e-168Showinfo_outline
282658543..2658965PHAGE_Entero_DE3_NC_042057: dsDNA binding protein; NCTC4168_02727; phage(gi100047)6.20e-96Showinfo_outline
292658992..2659381PHAGE_Entero_DE3_NC_042057: rnaseH; NCTC4168_02728; phage(gi100048)4.34e-90Showinfo_outline
302659374..2659673PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC4168_02729; phage(gi100049)3.64e-51Showinfo_outline
312659700..2661952PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC4168_02730; phage(gi100049)0.0Showinfo_outline
322661949..2662278PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_02731; phage(gi100050)8.02e-68Showinfo_outline
332662278..2662976PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_02732; phage(gi100051)4.38e-169Showinfo_outline
342662981..2663724PHAGE_Entero_mEp460_NC_019716: tail fiber component; NCTC4168_02733; phage(gi428782332)8.90e-178Showinfo_outline
352663721..2664263PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_02734; phage(gi100053)1.07e-96Showinfo_outline
362664324..2667719PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC4168_02735; phage(gi100054)0.0Showinfo_outline
372667787..2668386PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; NCTC4168_02736; phage(gi148609401)5.29e-140Showinfo_outline
382668583..2669041PROPHAGE_Salmon_Ty2: transposase; NCTC4168_02738; phage(gi29143766)4.54e-107Showinfo_outline
392669162..2671615PHAGE_Entero_JenP1_NC_029028: tail fiber protein; NCTC4168_02739; phage(gi971767090)0.0Showinfo_outline
40complement(2671540..2672445)PROPHAGE_Escher_MG1655: IS2 transposase TnpB; NCTC4168_02740; phage(gi16132094)0.0Showinfo_outline
41complement(2672403..2672768)PHAGE_Pseudo_MD8_NC_031091: hypothetical protein; NCTC4168_02741; phage(gi100010)3.69e-53Showinfo_outline
42complement(2672844..2672945)PROPHAGE_Escher_CFT073: transposase insC; NCTC4168_02742; phage(gi26249447)1.05e-13Showinfo_outline
432673050..2673331PHAGE_Entero_JenP1_NC_029028: hypothetical protein; NCTC4168_02743; phage(gi971767091)1.08e-20Showinfo_outline
442673341..2674381PHAGE_Entero_mEp460_NC_019716: side tail fiber protein; NCTC4168_02744; phage(gi428782336)3.37e-54Showinfo_outline
45complement(2674945..2675535)PHAGE_Entero_Mu_NC_000929: Gin; NCTC4168_02746; phage(gi9633542)3.18e-29Showinfo_outline
46complement(2675852..2676085)PHAGE_Salmon_118970_sal3_NC_031940: replication and recombination DNA helicase; NCTC4168_02747; phage(gi100033)1.44e-44Showinfo_outline
472676871..2678154PHAGE_Burkho_phi1026b_NC_005284: gp59; NCTC4168_02748; phage(gi38707949)1.08e-27Showinfo_outline
482678243..2679703putative sugar dehydrogenase; NCTC4168_027490.0Showinfo_outline
49complement(2679739..2679942)PHAGE_Salmon_SSU5_NC_018843: putative selenium-binding protein YdfZ; NCTC4168_02750; phage(gi410491512)4.86e-18Showinfo_outline
50complement(2680120..2680806)GntR family transcriptional regulator; NCTC4168_027510.0Showinfo_outline
51complement(2680895..2681641)PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; NCTC4168_02752; phage(gi971760361)8.52e-10Showinfo_outline

Region 10, total 64 CDS

#CDS PositionBLAST HitE-ValueSequence
12870596..2870610attL0.0Showinfo_outline
2complement(2875109..2876149)PHAGE_Entero_mEp460_NC_019716: side tail fiber protein; NCTC4168_02929; phage(gi428782336)1.92e-52Showinfo_outline
3complement(2876159..2876440)PHAGE_Entero_JenP1_NC_029028: hypothetical protein; NCTC4168_02930; phage(gi971767091)1.95e-21Showinfo_outline
4complement(2876440..2878626)PHAGE_Entero_JenP1_NC_029028: tail fiber protein; NCTC4168_02931; phage(gi971767090)0.0Showinfo_outline
5complement(2878747..2879205)PROPHAGE_Salmon_Ty2: transposase; NCTC4168_02932; phage(gi29143766)4.54e-107Showinfo_outline
6complement(2879402..2880001)PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; NCTC4168_02934; phage(gi148609401)3.27e-129Showinfo_outline
7complement(2880069..2883464)PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC4168_02935; phage(gi100054)0.0Showinfo_outline
8complement(2883525..2884067)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_02936; phage(gi100053)1.07e-96Showinfo_outline
9complement(2884064..2884663)PHAGE_Entero_DE3_NC_042057: recombination endonuclease subunit; NCTC4168_02937; phage(gi100052)3.54e-146Showinfo_outline
10complement(2884813..2885511)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_02938; phage(gi100051)7.58e-165Showinfo_outline
11complement(2885511..2885807)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_02939; phage(gi100050)1.29e-24Showinfo_outline
12complement(2885842..2886174)PHAGE_Entero_BP_4795_NC_004813: putative tail component; NCTC4168_02940; phage(gi157166052)1.77e-43Showinfo_outline
13complement(2886243..2889074)PHAGE_Pseudo_MP29_NC_011613: putative tail component protein; NCTC4168_02941; phage(gi215480016)3.97e-82Showinfo_outline
14complement(2889546..2889995)PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; NCTC4168_02942; phage(gi658307708)8.56e-09Showinfo_outline
15complement(2890056..2891018)PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; NCTC4168_02943; phage(gi100017)1.09e-24Showinfo_outline
16complement(2891045..2891437)PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; NCTC4168_02944; phage(gi100012)4.18e-08Showinfo_outline
17complement(2891434..2891814)PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; NCTC4168_02945; phage(gi100011)3.98e-20Showinfo_outline
182892183..2892509PHAGE_Pseudo_MD8_NC_031091: hypothetical protein; NCTC4168_02946; phage(gi100010)1.01e-42Showinfo_outline
192892620..2893411PROPHAGE_Escher_MG1655: IS2 transposase TnpB; NCTC4168_02947; phage(gi16132094)0.0Showinfo_outline
20complement(2893382..2893534)PHAGE_Acinet_Bphi_B1251_NC_019541: hypothetical protein; NCTC4168_02948; phage(gi423262010)8.75e-08Showinfo_outline
21complement(2893534..2893929)PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; NCTC4168_02949; phage(gi100009)4.00e-15Showinfo_outline
22complement(2893933..2894109)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC4168_02950; phage(gi356870607)3.12e-18Showinfo_outline
23complement(2894152..2895291)PHAGE_Vibrio_SSP002_NC_041910: replication and recombination DNA helicase; NCTC4168_02951; phage(gi100033)1.54e-36Showinfo_outline
24complement(2895390..2896154)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC4168_02952; phage(gi356870605)4.92e-115Showinfo_outline
25complement(2896259..2897374)PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; NCTC4168_02953; phage(gi985757697)4.60e-115Showinfo_outline
26complement(2897355..2898761)PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956: portal protein; NCTC4168_02954; phage(gi971760486)1.10e-77Showinfo_outline
27complement(2898764..2899297)PHAGE_Escher_Envy_NC_031081: ssDNA binding protein; NCTC4168_02955; phage(gi100044)5.73e-50Showinfo_outline
28complement(2899338..2900666)PROPHAGE_Escher_MG1655: IS4 transposase; NCTC4168_02956; phage(gi16132099)0.0Showinfo_outline
29complement(2900748..2901503)PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; NCTC4168_02957; phage(gi100002)3.55e-127Showinfo_outline
30complement(2901484..2902578)PHAGE_Burkho_BcepMigl_NC_019917: terminase small subunit; NCTC4168_02958; phage(gi431809885)2.08e-31Showinfo_outline
31complement(2902582..2902791)Uncharacterised protein; NCTC4168_029590.0Showinfo_outline
32complement(2902769..2903701)PHAGE_Lactob_jlb1_NC_024206: hypothetical protein; NCTC4168_02960; phage(gi971848912)1.01e-75Showinfo_outline
33complement(2903694..2904485)PHAGE_Lactob_phiLdb_NC_022762: putative ParB nuclease; NCTC4168_02961; phage(gi571798069)3.36e-61Showinfo_outline
34complement(2904623..2906047)Rac prophage; potassium transporter subunit; NCTC4168_029620.0Showinfo_outline
35complement(2906218..2906682)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_02963; phage(gi100031)4.80e-100Showinfo_outline
36complement(2906679..2907155)PHAGE_Entero_c_1_NC_019706: lysozyme; NCTC4168_02964; phage(gi428781798)2.40e-111Showinfo_outline
37complement(2907159..2907500)PHAGE_Entero_SfV_NC_003444: holin; NCTC4168_02965; phage(gi19549036)4.67e-58Showinfo_outline
382907718..2907879Uncharacterised protein; NCTC4168_029660.0Showinfo_outline
39complement(2907848..2908417)Uncharacterised protein; NCTC4168_029670.0Showinfo_outline
40complement(2908639..2909181)antitermination protein; NCTC4168_029680.0Showinfo_outline
41complement(2909178..2909468)PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; NCTC4168_02969; phage(gi327198620)1.27e-42Showinfo_outline
42complement(2909468..2910067)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC4168_02970; phage(gi966201473)1.53e-70Showinfo_outline
43complement(2910139..2910351)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC4168_02971; phage(gi423262436)1.14e-07Showinfo_outline
44complement(2910595..2912862)Uncharacterised protein; NCTC4168_029720.0Showinfo_outline
45complement(2912865..2913968)PHAGE_Pseudo_SM1_NC_041877: hypothetical protein; NCTC4168_02973; phage(gi100026)7.23e-10Showinfo_outline
46complement(2914107..2914841)PHAGE_Shigel_Stx_NC_029120: DNA replication protein; NCTC4168_02974; phage(gi985761263)1.31e-150Showinfo_outline
47complement(2914848..2916047)PHAGE_Salmon_SPN3UB_NC_019545: PrpO; NCTC4168_02975; phage(gi423262427)3.28e-22Showinfo_outline
48complement(2916060..2916482)PHAGE_Entero_mEp237_NC_019704: CII protein; NCTC4168_02976; phage(gi435439306)6.15e-10Showinfo_outline
49complement(2916479..2916721)PHAGE_Entero_mEpX1_NC_019709: prophage antirepressor; NCTC4168_02977; phage(gi428781916)1.03e-24Showinfo_outline
502916818..2917240PHAGE_Entero_mEp213_NC_019720: prophage repressor; NCTC4168_02978; phage(gi428782641)2.32e-19Showinfo_outline
512917540..2917674Rac prophage protein; NCTC4168_029790.0Showinfo_outline
522917685..2917840PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; predicted; phage protein; NCTC4168_02980(gi472340166)7.28e-13Showinfo_outline
53complement(2917837..2918448)PHAGE_Entero_lambda_NC_001416: Superinfection exclusion protein B; NCTC4168_02981; phage(gi19263394)3.98e-08Showinfo_outline
542918767..2918988PHAGE_Shigel_Stx_NC_029120: Kil protein; NCTC4168_02982; phage(gi985761255)1.04e-43Showinfo_outline
552918988..2919158PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; NCTC4168_02983; phage(gi169257260)1.27e-06Showinfo_outline
562919233..2919478putative bacteriophage protein; NCTC4168_029840.0Showinfo_outline
572919609..2922269PHAGE_Entero_Tyrion_NC_031077: DNA polymerase; NCTC4168_02985; phage(gi100036)9.83e-89Showinfo_outline
582922262..2923071PHAGE_Salmon_epsilon15_NC_004775: RecT; NCTC4168_02986; phage(gi30387413)1.45e-105Showinfo_outline
592923315..2923503Rac prophage; predicted protein; NCTC4168_029870.0Showinfo_outline
602923603..2923818PHAGE_Escher_phi191_NC_028660: hypothetical protein; NCTC4168_02988; phage(gi966198069)5.82e-05Showinfo_outline
612923820..2925055PROPHAGE_Escher_Sakai: putative integrase; NCTC4168_02989; phage(gi15832267)2.72e-113Showinfo_outline
622925142..2925156attR0.0Showinfo_outline
632925183..2926043C32 tRNA thiolase; NCTC4168_029900.0Showinfo_outline
64complement(2926172..2927545)PHAGE_Escher_Seurat_NC_027378: late promoter transcription; NCTC4168_02991; phage(gi100046)6.64e-07Showinfo_outline

Region 11, total 52 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(3037714..3040740)PHAGE_Entero_JenK1_NC_029021: tail fiber protein; NCTC4168_03103; phage(gi971766395)7.37e-113Showinfo_outline
23039208..3039219attL0.0Showinfo_outline
3complement(3040892..3041491)PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; NCTC4168_03104; phage(gi148609401)3.28e-125Showinfo_outline
4complement(3041559..3045038)PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; NCTC4168_03105; phage(gi148609400)0.0Showinfo_outline
5complement(3045099..3045647)PHAGE_Entero_cdtI_NC_009514: putative tail component; NCTC4168_03106; phage(gi148609399)1.17e-120Showinfo_outline
6complement(3045644..3046243)PHAGE_Entero_cdtI_NC_009514: putative tail protein; NCTC4168_03107; phage(gi148609398)1.40e-144Showinfo_outline
7complement(3046393..3047091)PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; NCTC4168_03108; phage(gi148609397)3.49e-161Showinfo_outline
8complement(3047091..3047432)PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; NCTC4168_03109; phage(gi148609396)1.48e-28Showinfo_outline
9complement(3047425..3050652)PHAGE_Entero_BP_4795_NC_004813: putative tail component; NCTC4168_03110; phage(gi157166052)0.0Showinfo_outline
10complement(3050699..3050977)PHAGE_Entero_mEp234_NC_019715: tail assembly chaperone; NCTC4168_03111; phage(gi428782266)6.01e-37Showinfo_outline
11complement(3051001..3051372)PHAGE_Stx2_c_1717_NC_011357: putative tail assembly chaperone; NCTC4168_03112; phage(gi209447188)5.37e-54Showinfo_outline
12complement(3051387..3052091)PHAGE_Entero_mEp234_NC_019715: major tail subunit; NCTC4168_03113; phage(gi428782264)1.08e-122Showinfo_outline
13complement(3052150..3052494)PHAGE_Cronob_ENT39118_NC_019934: putative minor tail protein; NCTC4168_03114; phage(gi431811079)1.42e-40Showinfo_outline
14complement(3052491..3052937)PHAGE_Entero_mEpX1_NC_019709: hypothetical protein; NCTC4168_03115; phage(gi428781880)1.05e-83Showinfo_outline
15complement(3052937..3053275)PHAGE_Entero_HK97_NC_002167: putative head-tail adaptor; NCTC4168_03116; phage(gi9634168)5.81e-43Showinfo_outline
16complement(3053284..3053601)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC4168_03117; phage(gi100083)3.64e-26Showinfo_outline
17complement(3053678..3054895)PHAGE_Entero_SfV_NC_003444: capsid; NCTC4168_03118; phage(gi19548995)0.0Showinfo_outline
18complement(3054910..3055509)PHAGE_Entero_SfV_NC_003444: capsid protease; NCTC4168_03119; phage(gi19548994)3.84e-117Showinfo_outline
19complement(3055502..3056728)PHAGE_Entero_SfV_NC_003444: portal protein; NCTC4168_03120; phage(gi19548993)0.0Showinfo_outline
20complement(3056876..3058633)PHAGE_Entero_mEp235_NC_019708: terminase large subunit; NCTC4168_03121; phage(gi428781812)0.0Showinfo_outline
21complement(3058633..3059115)PHAGE_Entero_mEp235_NC_019708: terminase small subunit; NCTC4168_03122; phage(gi428781811)2.79e-83Showinfo_outline
22complement(3059263..3059613)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC4168_03123; phage(gi18249898)1.23e-70Showinfo_outline
233059752..3060291Uncharacterised protein; NCTC4168_031240.0Showinfo_outline
24complement(3060297..3060563)PHAGE_Erwini_Ea9_2_NC_023579: hypothetical protein; NCTC4168_03125; phage(gi589891165)1.79e-06Showinfo_outline
25complement(3060719..3061186)PHAGE_Entero_cdtI_NC_009514: lysin; NCTC4168_03126; phage(gi148609441)2.66e-98Showinfo_outline
26complement(3061183..3061716)PHAGE_Stx2_c_86_NC_008464: lysozyme protein R; Qin; phage prophage; NCTC4168_03127(gi116221999)1.40e-124Showinfo_outline
27complement(3061780..3062130)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC4168_03128; phage(gi428782371)9.69e-51Showinfo_outline
28complement(3062135..3062350)PHAGE_Entero_cdtI_NC_009514: lysis protein; NCTC4168_03129; phage(gi148609439)3.99e-40Showinfo_outline
29complement(3062792..3062868)tRNA0.0Showinfo_outline
30complement(3062882..3062958)tRNA0.0Showinfo_outline
31complement(3062966..3063041)tRNA0.0Showinfo_outline
32complement(3063252..3063941)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; NCTC4168_03134; phage(gi169257244)8.36e-100Showinfo_outline
33complement(3063938..3064303)PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; NCTC4168_03135; phage(gi985761276)2.53e-51Showinfo_outline
34complement(3064304..3065359)PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC4168_03136; phage(gi557307571)1.09e-110Showinfo_outline
35complement(3065810..3066688)Type-2 restriction enzyme NgoMIV; NCTC4168_031370.0Showinfo_outline
36complement(3068005..3068670)putative prophage protein; NCTC4168_031390.0Showinfo_outline
37complement(3068845..3069240)PHAGE_Shigel_Stx_NC_029120: LygF; NCTC4168_03140; phage(gi985761265)6.97e-51Showinfo_outline
38complement(3069256..3070026)PHAGE_Shigel_Stx_NC_029120: hypothetical protein; NCTC4168_03141; phage(gi985761264)2.18e-91Showinfo_outline
39complement(3070060..3070521)PHAGE_Escher_HK639_NC_016158: replication protein 14; NCTC4168_03142; phage(gi356870655)3.89e-34Showinfo_outline
40complement(3070514..3071530)PHAGE_Escher_TL_2011b_NC_019445: hypothetical protein; NCTC4168_03143; phage(gi418487646)1.79e-56Showinfo_outline
41complement(3071602..3072027)PHAGE_Pectob_ZF40_NC_019522: putative cII repressor; NCTC4168_03144; phage(gi422936652)2.63e-06Showinfo_outline
42complement(3072011..3072292)PHAGE_Entero_c_1_NC_019706: prophage antirepressor; NCTC4168_03145; phage(gi428781783)5.92e-33Showinfo_outline
433072393..3072812PHAGE_Entero_cdtI_NC_009514: Repressor; NCTC4168_03146; phage(gi148609423)1.52e-05Showinfo_outline
443072997..3073233PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; NCTC4168_03147; phage(gi472340166)1.51e-11Showinfo_outline
453073235..3073363putative prophage protein; NCTC4168_031480.0Showinfo_outline
463073393..3073611putative prophage protein; NCTC4168_031490.0Showinfo_outline
47complement(3073615..3073779)Uncharacterised protein; NCTC4168_031500.0Showinfo_outline
483074178..3074366cell division inhibition protein; NCTC4168_031520.0Showinfo_outline
493074363..3074554putative prophage protein; NCTC4168_031530.0Showinfo_outline
503074647..3077118PHAGE_Salmon_118970_sal3_NC_031940: baseplate hub subunit; NCTC4168_03154; phage(gi100107)5.34e-69Showinfo_outline
513077107..3077118attR0.0Showinfo_outline
523077409..3078539PHAGE_Entero_HK022_NC_002166: integrase; NCTC4168_03155; phage(gi9634144)1.42e-67Showinfo_outline

Region 12, total 66 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(3208572..3211598)PHAGE_Entero_JenK1_NC_029021: tail fiber protein; NCTC4168_03288; phage(gi971766395)7.60e-113Showinfo_outline
23210066..3210077attL0.0Showinfo_outline
3complement(3211750..3212349)PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; NCTC4168_03289; phage(gi148609401)9.94e-136Showinfo_outline
4complement(3212417..3216109)PHAGE_Stx2_c_1717_NC_011357: putative tail fiber component J; NCTC4168_03290; phage(gi209447196)0.0Showinfo_outline
5complement(3216453..3216587)PHAGE_Entero_BP_4795_NC_004813: putative tail component; NCTC4168_03291; phage(gi157166056)1.56e-22Showinfo_outline
6complement(3216584..3217033)PHAGE_Stx2_c_1717_NC_011357: putative tail component; NCTC4168_03292; phage(gi209447195)5.35e-81Showinfo_outline
7complement(3217030..3217773)PHAGE_Entero_BP_4795_NC_004813: putative tail fiber component; NCTC4168_03293; phage(gi157166055)0.0Showinfo_outline
8complement(3217784..3218482)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_03294; phage(gi100051)3.91e-137Showinfo_outline
9complement(3218482..3218811)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_03295; phage(gi100050)4.12e-59Showinfo_outline
10complement(3218808..3221369)PHAGE_Entero_DE3_NC_042057: RNA polymerase sigma factor; NCTC4168_03296; phage(gi100049)0.0Showinfo_outline
11complement(3221350..3221763)PHAGE_Entero_DE3_NC_042057: rnaseH; NCTC4168_03297; phage(gi100048)7.30e-59Showinfo_outline
12complement(3221790..3222221)PHAGE_Entero_DE3_NC_042057: dsDNA binding protein; NCTC4168_03298; phage(gi100047)1.97e-61Showinfo_outline
13complement(3222240..3222989)PHAGE_Entero_DE3_NC_042057: late promoter transcription; NCTC4168_03299; phage(gi100046)1.15e-135Showinfo_outline
14complement(3222997..3223392)PHAGE_Entero_DE3_NC_042057: loader of DNA helicase; NCTC4168_03300; phage(gi100045)2.21e-73Showinfo_outline
15complement(3223389..3223922)PHAGE_Entero_DE3_NC_042057: ssDNA binding protein; NCTC4168_03301; phage(gi100044)2.44e-74Showinfo_outline
16complement(3223938..3224291)PHAGE_Entero_DE3_NC_042057: RNA polymerase binding protein; NCTC4168_03302; phage(gi100043)1.88e-52Showinfo_outline
17complement(3224284..3224658)PHAGE_Entero_HK225_NC_019717: head assembly protein Fi; NCTC4168_03303; phage(gi428782384)3.04e-05Showinfo_outline
18complement(3224710..3225738)PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC4168_03304; phage(gi100041)3.51e-152Showinfo_outline
19complement(3225796..3226143)PHAGE_Entero_DE3_NC_042057: clamp-loader subunit; NCTC4168_03305; phage(gi100040)1.27e-29Showinfo_outline
20complement(3226180..3227685)PHAGE_Entero_DE3_NC_042057: RegA; NCTC4168_03306; phage(gi100039)1.17e-133Showinfo_outline
21complement(3227675..3229267)PHAGE_Entero_DE3_NC_042057: hypothetical protein; NCTC4168_03307; phage(gi100038)0.0Showinfo_outline
22complement(3229264..3229470)PHAGE_Entero_HK225_NC_019717: head-tail connector gpW; NCTC4168_03308; phage(gi428782379)9.40e-17Showinfo_outline
23complement(3229454..3230854)PHAGE_Entero_DE3_NC_042057: DNA polymerase; NCTC4168_03309; phage(gi100036)0.0Showinfo_outline
24complement(3231355..3231864)PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; NCTC4168_03310; phage(gi100035)1.72e-20Showinfo_outline
253232347..3232700Uncharacterised protein; NCTC4168_033110.0Showinfo_outline
26complement(3232823..3233149)truncated TonB-like membrane protein encoded within prophage; NCTC4168_033120.0Showinfo_outline
27complement(3233460..3233918)PHAGE_Entero_BP_4795_NC_004813: putative endopeptidase Rz; NCTC4168_03313; phage(gi157166036)2.82e-89Showinfo_outline
28complement(3233930..3234061)PHAGE_Escher_phi191_NC_028660: hypothetical protein; NCTC4168_03314; phage(gi966198023)1.22e-14Showinfo_outline
29complement(3234076..3234222)Uncharacterised protein; NCTC4168_033150.0Showinfo_outline
30complement(3234415..3234948)PHAGE_Entero_BP_4795_NC_004813: putative R protein; Qin; phage prophage; NCTC4168_03316(gi157166033)1.15e-126Showinfo_outline
31complement(3234985..3235875)PHAGE_Stx2_c_86_NC_008464: hypothetical protein; NCTC4168_03317; phage(gi116221997)1.01e-140Showinfo_outline
32complement(3235880..3236095)PHAGE_Shigel_Stx_NC_029120: holin lysis protein S; NCTC4168_03318; phage(gi985761286)1.00e-45Showinfo_outline
33complement(3236172..3236417)PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; NCTC4168_03319; phage(gi725949739)8.25e-45Showinfo_outline
34complement(3236774..3238735)PHAGE_Entero_BP_4795_NC_004813: hypothetical protein YjhS; NCTC4168_03320; phage(gi157166028)0.0Showinfo_outline
353238996..3239331PHAGE_Stx2_c_1717_NC_011357: hypothetical protein; NCTC4168_03321; phage(gi209447168)6.84e-54Showinfo_outline
36complement(3239716..3239913)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC4168_03323; phage(gi18249887)1.58e-39Showinfo_outline
37complement(3240138..3240692)PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC4168_03324; phage(gi100037)6.31e-06Showinfo_outline
38complement(3240701..3241060)PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; NCTC4168_03325; phage(gi985761276)3.42e-46Showinfo_outline
39complement(3241073..3242122)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC4168_03326; phage(gi428782365)6.68e-133Showinfo_outline
40complement(3242983..3243162)membrane protein; NCTC4168_033280.0Showinfo_outline
41complement(3243408..3243797)PHAGE_Escher_Av_05_NC_025830: hypothetical protein; NCTC4168_03329; phage(gi730985110)9.48e-46Showinfo_outline
42complement(3243794..3243970)PHAGE_Serrat_vB_Sru_IME250_NC_042047: hypothetical protein; NCTC4168_03330; phage(gi100129)1.71e-13Showinfo_outline
43complement(3243963..3244145)PHAGE_Entero_phiEF24C_NC_009904: hypothetical protein; NCTC4168_03331; phage(gi158079459)1.10e-08Showinfo_outline
44complement(3244239..3244595)PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; NCTC4168_03332; phage(gi100050)1.04e-11Showinfo_outline
45complement(3244573..3244716)Uncharacterised protein; NCTC4168_033330.0Showinfo_outline
46complement(3244727..3244990)PHAGE_Salmon_FSLSP030_NC_021779: hypothetical protein; NCTC4168_03334; phage(gi525972396)1.97e-41Showinfo_outline
47complement(3244992..3245210)PHAGE_Escher_PA28_NC_041935: hypothetical protein; NCTC4168_03335; phage(gi100012)5.65e-40Showinfo_outline
48complement(3245243..3245455)Uncharacterised protein; NCTC4168_033360.0Showinfo_outline
49complement(3245651..3245983)PHAGE_Shigel_Stx_NC_029120: LygF; NCTC4168_03337; phage(gi985761265)5.76e-49Showinfo_outline
50complement(3245999..3246769)PHAGE_Shigel_Stx_NC_029120: hypothetical protein; NCTC4168_03338; phage(gi985761264)1.78e-92Showinfo_outline
51complement(3246791..3247537)PHAGE_Shigel_POCJ13_NC_025434: DNA replication protein; NCTC4168_03339; phage(gi725949718)7.73e-151Showinfo_outline
52complement(3247544..3248431)PHAGE_Shigel_SfIV_NC_022749: replication protein; NCTC4168_03340; phage(gi557307567)4.43e-113Showinfo_outline
53complement(3248529..3248954)PHAGE_Entero_mEp237_NC_019704: CII protein; NCTC4168_03341; phage(gi435439306)8.92e-07Showinfo_outline
54complement(3248951..3249253)PHAGE_Entero_c_1_NC_019706: prophage antirepressor; NCTC4168_03342; phage(gi428781783)6.88e-10Showinfo_outline
553249351..3249722repressor protein encoded by cryptic prophage CP-933P; NCTC4168_033430.0Showinfo_outline
563249743..3249934Uncharacterised protein; NCTC4168_033440.0Showinfo_outline
573249936..3250214plasmid stabilization system protein; NCTC4168_033450.0Showinfo_outline
583250424..3250657PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; NCTC4168_03346; phage(gi472340166)2.39e-11Showinfo_outline
593250669..3251007PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; NCTC4168_03347; phage(gi966197735)1.66e-10Showinfo_outline
60complement(3250996..3251190)Uncharacterised protein; NCTC4168_033480.0Showinfo_outline
613251766..3251954inhibitor of cell division encoded within prophage CP-933U; NCTC4168_033500.0Showinfo_outline
623251951..3252139phage protein; NCTC4168_033510.0Showinfo_outline
633252232..3254670PHAGE_Shigel_Stx_NC_029120: exodeoxyribonuclease VIII; NCTC4168_03352; phage(gi985761253)1.71e-154Showinfo_outline
643254659..3254670attR0.0Showinfo_outline
653254732..3255001excisionase for prophage; NCTC4168_033530.0Showinfo_outline
663254970..3256088PHAGE_Entero_HK022_NC_002166: integrase; NCTC4168_03354; phage(gi9634144)9.81e-62Showinfo_outline

Region 13, total 58 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(3490234..3491097)PHAGE_Escher_RCS47_NC_042128: hypothetical protein; NCTC4168_03584; phage(gi100134)1.99e-18Showinfo_outline
2complement(3491099..3491716)PHAGE_Escher_RCS47_NC_042128: hypothetical protein; NCTC4168_03585; phage(gi100133)5.30e-91Showinfo_outline
3complement(3491727..3494171)PHAGE_Escher_RCS47_NC_042128: hypothetical protein; NCTC4168_03586; phage(gi100132)0.0Showinfo_outline
43494366..3494381attL0.0Showinfo_outline
5complement(3494471..3495463)PHAGE_Entero_P88_NC_026014: integrase; NCTC4168_03588; phage(gi744692701)1.91e-122Showinfo_outline
6complement(3495533..3495874)PHAGE_Entero_WPhi_NC_005056: C; NCTC4168_03589; phage(gi33438928)3.52e-24Showinfo_outline
73495978..3496502PHAGE_Entero_P88_NC_026014: regulatory protein; NCTC4168_03590; phage(gi744692703)6.26e-05Showinfo_outline
83497043..3497306Uncharacterised protein; NCTC4168_035910.0Showinfo_outline
93497459..3497803PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC4168_03592; phage(gi744692704)3.57e-34Showinfo_outline
103497822..3498064PHAGE_Entero_P88_NC_026014: DNA modification methyltransferase; NCTC4168_03593; phage(gi744692706)2.48e-12Showinfo_outline
113498061..3498186PHAGE_Entero_P88_NC_026014: membrane protein; NCTC4168_03594; phage(gi744692707)3.07e-11Showinfo_outline
123498400..3498630Uncharacterised protein; NCTC4168_035950.0Showinfo_outline
133498630..3499211PHAGE_Entero_mEp235_NC_019708: exonuclease; NCTC4168_03596; phage(gi428781840)1.17e-36Showinfo_outline
143499444..3500424PHAGE_Salmon_SEN5_NC_028701: methyl-directed repair DNA adenine methylase; NCTC4168_03597; phage(gi966201549)8.80e-81Showinfo_outline
153500460..3500696Uncharacterised protein; NCTC4168_035980.0Showinfo_outline
163500693..3500911PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC4168_03599; phage(gi744692708)1.85e-10Showinfo_outline
173500902..3501252PHAGE_Entero_N15_NC_001901: gp57; NCTC4168_03600; phage(gi9630522)9.42e-32Showinfo_outline
18complement(3501226..3501750)Uncharacterised protein; NCTC4168_036010.0Showinfo_outline
193502074..3502295PHAGE_Entero_P88_NC_026014: derepression protein; NCTC4168_03604; phage(gi744692714)1.93e-34Showinfo_outline
203502364..3502780Uncharacterised protein; NCTC4168_036050.0Showinfo_outline
213502777..3504483PHAGE_Entero_P88_NC_026014: replication protein; NCTC4168_03606; phage(gi744692716)1.27e-160Showinfo_outline
223504506..3505291PHAGE_Entero_P88_NC_026014: replication protein; NCTC4168_03607; phage(gi744692716)2.27e-53Showinfo_outline
233505288..3505692Uncharacterised protein; NCTC4168_036080.0Showinfo_outline
243505702..3505911Uncharacterised protein; NCTC4168_036090.0Showinfo_outline
253505908..3506246PHAGE_Entero_lambda_NC_001416: ren exclusion protein; NCTC4168_03610; phage(gi9626297)1.92e-19Showinfo_outline
263506279..3506596PHAGE_Staphy_TEM123_NC_017968: single-stranded DNA-binding protein; NCTC4168_03611; phage(gi388570359)7.11e-09Showinfo_outline
27complement(3506646..3506918)putative transmembrane protein; NCTC4168_036120.0Showinfo_outline
28complement(3507737..3508780)PHAGE_Entero_P88_NC_026014: PBSX family portal protein; NCTC4168_03613; phage(gi744692723)0.0Showinfo_outline
29complement(3508786..3510519)PHAGE_Entero_P88_NC_026014: terminase ATPase subunit; NCTC4168_03614; phage(gi744692724)0.0Showinfo_outline
303510678..3511514PHAGE_Entero_P88_NC_026014: capsid scaffolding protein; NCTC4168_03615; phage(gi744692725)1.34e-111Showinfo_outline
313511530..3512624PHAGE_Entero_P88_NC_026014: major capsid protein; NCTC4168_03616; phage(gi744692726)1.46e-160Showinfo_outline
323512674..3513483PHAGE_Entero_P88_NC_026014: terminase endonuclease subunit; NCTC4168_03617; phage(gi744692727)4.65e-94Showinfo_outline
333513592..3514086PHAGE_Entero_P88_NC_026014: head completion-stabilization protein; NCTC4168_03618; phage(gi744692728)1.55e-67Showinfo_outline
343514086..3514286PHAGE_Entero_P88_NC_026014: tail component protein; NCTC4168_03619; phage(gi744692729)1.72e-22Showinfo_outline
353514289..3514579Uncharacterised protein; NCTC4168_036200.0Showinfo_outline
363514563..3515102PHAGE_Mannhe_phiMHaA1_NC_008201: endolysin; NCTC4168_03621; phage(gi109289945)6.83e-37Showinfo_outline
373515099..3515542PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC4168_03622; phage(gi744692732)3.16e-06Showinfo_outline
383515652..3517589PHAGE_Entero_BP_4795_NC_004813: hypothetical protein YjhS; NCTC4168_03623; phage(gi157166028)0.0Showinfo_outline
393517890..3518360PHAGE_Entero_P88_NC_026014: tail completion protein; NCTC4168_03624; phage(gi744692733)5.07e-61Showinfo_outline
403518357..3518992PHAGE_Entero_P88_NC_026014: tail protein; NCTC4168_03625; phage(gi744692734)2.01e-58Showinfo_outline
413518989..3519570PHAGE_Entero_P88_NC_026014: baseplate assembly protein V; NCTC4168_03626; phage(gi744692735)2.60e-85Showinfo_outline
423519567..3519935PHAGE_Entero_P88_NC_026014: lysozyme family baseplate assembly protein; NCTC4168_03627; phage(gi744692736)1.59e-45Showinfo_outline
433519922..3520818PHAGE_Entero_P88_NC_026014: baseplate assembly protein J; NCTC4168_03628; phage(gi744692737)4.14e-143Showinfo_outline
443520811..3521344PHAGE_Salmon_SEN1_NC_029003: tail fibers protein; NCTC4168_03629; phage(gi971764926)1.64e-83Showinfo_outline
453521351..3524332PHAGE_Escher_ECML_134_NC_025449: tail fiber protein; NCTC4168_03630; phage(gi712915084)5.42e-157Showinfo_outline
463524332..3525078PHAGE_Salmon_SEN1_NC_029003: tail fibers protein; NCTC4168_03631; phage(gi971764928)1.23e-32Showinfo_outline
47complement(3525111..3525578)PHAGE_Entero_P88_NC_026014: tail protein; NCTC4168_03632; phage(gi744692744)6.52e-87Showinfo_outline
48complement(3525590..3528448)PHAGE_Entero_P88_NC_026014: tail tape measure protein; putative; phage tail length tape measure motif; NCTC4168_03633(gi744692745)1.80e-162Showinfo_outline
49complement(3528596..3528988)PHAGE_Entero_P88_NC_026014: tail protein; NCTC4168_03634; phage(gi744692747)1.60e-13Showinfo_outline
50complement(3529034..3529546)PHAGE_Entero_P88_NC_026014: major tail tube protein; NCTC4168_03635; phage(gi744692748)9.87e-72Showinfo_outline
51complement(3529546..3530751)PHAGE_Entero_P88_NC_026014: tail sheath monomer; NCTC4168_03636; phage(gi744692749)0.0Showinfo_outline
523530892..3532037PHAGE_Entero_P88_NC_026014: gene D protein; NCTC4168_03637; phage(gi744692751)0.0Showinfo_outline
533532513..3532653PHAGE_Escher_P13374_NC_018846: prophage host toxic membrane protein; NCTC4168_03638; phage(gi410491667)8.43e-14Showinfo_outline
543532850..3532865attR0.0Showinfo_outline
55complement(3532894..3534186)PHAGE_Bacill_G_NC_023719: gp287; NCTC4168_03639; phage(gi593777743)3.28e-09Showinfo_outline
56complement(3534277..3535620)PHAGE_Bacill_G_NC_023719: gp70; NCTC4168_03640; phage(gi593777538)4.38e-102Showinfo_outline
57complement(3535631..3536242)outer-membrane lipoprotein carrier protein; NCTC4168_036410.0Showinfo_outline
58complement(3536401..3540468)PHAGE_Mycoba_Courthouse_NC_023690: gp201; NCTC4168_03642; phage(gi593774477)2.24e-100Showinfo_outline
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5435021 bps
Phages: 13
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Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

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