Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGIF01000006.1

GenInfo (GI) Number: 0000000000

Download Results: UGIF01000006.1.PHASTER.zip

gi|00000000|ref|UGIF01000006.1| Enterococcus durans strain NCTC8129 genome assembly, contig: 17666, gc%: 34.88%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
117.3Kbincomplete4036313-17613 info_outlinePHAGE_Lister_LP_030_2_NC_021539(4)34.69%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGIF01000006.1| Enterococcus durans strain NCTC8129 genome assembly, contig: 17666, gc%: 34.88%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 38 CDS

#CDS PositionBLAST HitE-ValueSequence
1313..684PHAGE_Bacill_phi105_NC_048631: hypothetical protein; NCTC8129_03249; phage(gi100020)3.84e-05Showinfo_outline
2808..1113PHAGE_Lactob_ATCC8014_NC_019916: minor tail protein; NCTC8129_03250; phage(gi431809814)3.55e-05Showinfo_outline
31484..1672Uncharacterised protein; NCTC8129_032510.0Showinfo_outline
41653..1922Uncharacterised protein; NCTC8129_032520.0Showinfo_outline
51861..1872attL0.0Showinfo_outline
61960..2085PHAGE_Lister_B054_NC_009813: gp28; NCTC8129_03253; phage(gi157325312)5.23e-09Showinfo_outline
72455..2652PHAGE_Entero_vB_IME197_NC_028671: holin; NCTC8129_03254; phage(gi966199031)4.13e-33Showinfo_outline
82663..3679PHAGE_Lactob_PL_1_NC_022757: lysin; NCTC8129_03255; phage(gi557308014)5.18e-69Showinfo_outline
93879..4970PHAGE_Strept_phiARI0460_1_NC_031913: putative single-stranded DNA binding protein; NCTC8129_03256; phage(gi100050)7.72e-21Showinfo_outline
10complement(4897..5103)Uncharacterised protein; NCTC8129_032570.0Showinfo_outline
11complement(5879..6184)Uncharacterised protein; NCTC8129_032580.0Showinfo_outline
12complement(6479..7621)PHAGE_Strept_T12_NC_028700: site-specific recombinase; NCTC8129_03259; phage(gi966201482)1.94e-87Showinfo_outline
13complement(7733..7939)Uncharacterised protein; NCTC8129_032600.0Showinfo_outline
14complement(8337..9029)PHAGE_Bacill_Eldridge_NC_030920: hypothetical protein; NCTC8129_03261; phage(gi100225)1.42e-05Showinfo_outline
15complement(9113..9535)PHAGE_Lactoc_98201_NC_031064: hypothetical protein; NCTC8129_03262; phage(gi100003)2.00e-07Showinfo_outline
16complement(9553..9873)PHAGE_Lactoc_bIL312_NC_002671: repressor; NCTC8129_03263; phage(gi13095896)2.00e-17Showinfo_outline
1710172..10312Uncharacterised protein; NCTC8129_032640.0Showinfo_outline
18complement(10309..10479)Uncharacterised protein; NCTC8129_032650.0Showinfo_outline
1910559..10750Uncharacterised protein; NCTC8129_032660.0Showinfo_outline
20complement(10747..10986)Domain of uncharacterised function (DUF1883); NCTC8129_032670.0Showinfo_outline
2111062..11334PHAGE_Lactob_phiAQ113_NC_019782: prophage antirepressor; NCTC8129_03268; phage(gi446730267)4.28e-19Showinfo_outline
2211334..11432PHAGE_Paenib_HB10c2_NC_028758: hypothetical protein; NCTC8129_03269; phage(gi971740685)5.78e-06Showinfo_outline
2311447..11650Helix-turn-helix domain protein; NCTC8129_032700.0Showinfo_outline
2411665..11892Uncharacterised protein; NCTC8129_032710.0Showinfo_outline
2511905..12087succinate dehydrogenase cytochrome b558 subunit; NCTC8129_032720.0Showinfo_outline
26complement(12149..12487)Uncharacterised protein; NCTC8129_032730.0Showinfo_outline
2712658..12975Uncharacterised protein; NCTC8129_032740.0Showinfo_outline
2813406..13558Uncharacterised protein; NCTC8129_032750.0Showinfo_outline
2913626..14105PHAGE_Lister_2389_NC_003291: Gp47 protein; NCTC8129_03276; phage(gi17488552)2.74e-44Showinfo_outline
3014092..14604PHAGE_Bacill_BCP8_2_NC_027355: hypothetical protein; NCTC8129_03277; phage(gi849253098)6.56e-47Showinfo_outline
3114601..15188PHAGE_Lister_2389_NC_003291: helicase; NCTC8129_03278; phage(gi17488553)2.73e-51Showinfo_outline
3215181..15849PHAGE_Lister_2389_NC_003291: helicase; NCTC8129_03279; phage(gi17488553)2.52e-71Showinfo_outline
3315441..15452attR0.0Showinfo_outline
3415846..15977PHAGE_Lactob_T25_NC_048625: hypothetical protein; NCTC8129_03280; phage(gi100022)1.59e-07Showinfo_outline
3516176..16415PHAGE_Pseudo_201phi2_1_NC_010821: hypothetical protein; NCTC8129_03281; phage(gi189490194)4.32e-06Showinfo_outline
3616650..16850PHAGE_Lister_2389_NC_003291: Gp49 protein; NCTC8129_03282; phage(gi17488554)1.51e-08Showinfo_outline
3716931..17125PHAGE_Lister_2389_NC_003291: primase; NCTC8129_03283; phage(gi17488555)2.79e-20Showinfo_outline
3817122..17613PHAGE_Lister_2389_NC_003291: primase; NCTC8129_03284; phage(gi17488555)1.35e-42Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 17666 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download