Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGIP01000002.1

GenInfo (GI) Number: 0000000000

Download Results: UGIP01000002.1.PHASTER.zip

gi|00000000|ref|UGIP01000002.1| Enterococcus durans strain NCTC8130 genome assembly, contig: 3078716, gc%: 37.95%

Download summary as .txt file: summary.txt file_download

Total: 6 prophage regions have been identified, of which 3 regions are intact, 2 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
130.3Kbincomplete609439445-469809 info_outlinePHAGE_Bacter_Diva_NC_028788(2)37.10%Show info_outline
220.6Kbincomplete209466452-487064 info_outlinePHAGE_Bacter_Sitara_NC_028854(3)36.10%Show info_outline
315.1Kbquestionable9018476825-491960 info_outlinePHAGE_Bacter_Diva_NC_028788(2)35.23%Show info_outline
468.2Kbintact150791925963-1994197 info_outlinePHAGE_Bacill_phBC6A52_NC_004821(11)36.59%Show info_outline
564.2Kbintact150841994123-2058402 info_outlinePHAGE_Entero_IME_EFm1_NC_024356(7)36.96%Show info_outline
646Kbintact100712590209-2636217 info_outlinePHAGE_Lister_B025_NC_009812(9)36.25%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGIP01000002.1| Enterococcus durans strain NCTC8130 genome assembly, contig: 3078716, gc%: 37.95%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 11 CDS

#CDS PositionBLAST HitE-ValueSequence
1439445..439513attL0.0Showinfo_outline
2complement(451247..452083)PHAGE_Bacter_Diva_NC_028788: transposase-like protein; NCTC8130_00447; phage(gi971743572)6.73e-81Showinfo_outline
3complement(452119..452409)PHAGE_Bacter_Diva_NC_028788: transposase; NCTC8130_00448; phage(gi971743573)6.45e-33Showinfo_outline
4452529..453230Uncharacterised protein; NCTC8130_004490.0Showinfo_outline
5453247..454215Uncharacterised protein; NCTC8130_004500.0Showinfo_outline
6454244..454612Uncharacterised protein; NCTC8130_004510.0Showinfo_outline
7454672..455214PHAGE_Staphy_SA11_NC_019511: hypothetical protein; NCTC8130_00452; phage(gi422935728)3.31e-07Showinfo_outline
8complement(455233..456192)PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; NCTC8130_00453; phage(gi588498272)5.91e-41Showinfo_outline
9456411..457601PROPHAGE_Escher_CFT073: transposase; NCTC8130_00454; phage(gi26246249)8.06e-58Showinfo_outline
10458137..458709PHAGE_Clostr_phiCT19406A_NC_030950: hypothetical protein; NCTC8130_00455; phage(gi100019)6.23e-31Showinfo_outline
11469809..469877attR0.0Showinfo_outline

Region 2, total 11 CDS

#CDS PositionBLAST HitE-ValueSequence
1466452..466463attL0.0Showinfo_outline
2466849..467400PHAGE_Strept_phiARI0923_NC_030946: hypothetical protein; NCTC8130_00465; phage(gi100020)2.31e-35Showinfo_outline
3467689..468255PHAGE_Lactoc_50101_NC_031040: hypothetical protein; NCTC8130_00466; phage(gi100050)9.45e-13Showinfo_outline
4469015..469392FMN-binding protein; NCTC8130_004670.0Showinfo_outline
5469599..469793Uncharacterized phage-associated protein; NCTC8130_004680.0Showinfo_outline
6469884..470174PHAGE_Paenib_Shelly_NC_041909: membrane-associated initiation of head vertex; NCTC8130_00469; phage(gi100034)1.04e-33Showinfo_outline
7470210..471046PHAGE_Paenib_Shelly_NC_041909: replication and recombination DNA helicase; NCTC8130_00470; phage(gi100033)4.43e-80Showinfo_outline
8471211..472539PHAGE_Paenib_Shelly_NC_041909: hypothetical protein; NCTC8130_00471; phage(gi100028)1.67e-26Showinfo_outline
9complement(472701..473063)HxlR-like helix-turn-helix family protein; NCTC8130_004720.0Showinfo_outline
10473187..474302PHAGE_Synech_S_SM2_NC_015279: zinc-containing alcohol dehydrogenase superfamily protein; NCTC8130_00473; phage(gi326781942)1.73e-31Showinfo_outline
11487064..487075attR0.0Showinfo_outline

Region 3, total 18 CDS

#CDS PositionBLAST HitE-ValueSequence
1476825..477787PHAGE_Synech_S_SM2_NC_015279: zinc-containing alcohol dehydrogenase superfamily protein; NCTC8130_00477; phage(gi326781942)1.84e-08Showinfo_outline
2478254..478535PHAGE_Paenib_Shelly_NC_041909: membrane-associated initiation of head vertex; NCTC8130_00478; phage(gi100034)2.79e-29Showinfo_outline
3478883..479086ABC-type multidrug transport system, ATPase component; NCTC8130_004790.0Showinfo_outline
4479250..480440PROPHAGE_Escher_CFT073: transposase; NCTC8130_00480; phage(gi26246249)1.66e-57Showinfo_outline
5480682..480861transposase; NCTC8130_004810.0Showinfo_outline
6480852..481589PROPHAGE_Shewan_MR-1: ISSod6, transposase; NCTC8130_00482; phage(gi24374783)5.69e-05Showinfo_outline
7481698..481988PHAGE_Paenib_Shelly_NC_041909: membrane-associated initiation of head vertex; NCTC8130_00483; phage(gi100034)1.04e-33Showinfo_outline
8482024..482812PHAGE_Bacter_Diva_NC_028788: transposase-like protein; NCTC8130_00484; phage(gi971743572)2.82e-81Showinfo_outline
9483058..483396ABC transporter, ATP-binding protein/permease; NCTC8130_004850.0Showinfo_outline
10483429..484160PHAGE_Bacill_SPbeta_NC_001884: ABC transporter; NCTC8130_00486; phage(gi9630145)9.49e-23Showinfo_outline
11484220..484516Enterocin A Immunity; NCTC8130_004870.0Showinfo_outline
12complement(484575..485657)PROPHAGE_Escher_CFT073: transposase; NCTC8130_00488; phage(gi26246249)5.64e-63Showinfo_outline
13complement(485770..486132)Uncharacterised protein; NCTC8130_004890.0Showinfo_outline
14complement(486149..486517)PHAGE_Entero_EF62phi_NC_017732: hypothetical protein; NCTC8130_00490; phage(gi384519758)2.86e-55Showinfo_outline
15complement(486517..487320)PHAGE_Entero_EF62phi_NC_017732: chromosome partitioning ATPase; NCTC8130_00491; phage(gi384519759)3.37e-153Showinfo_outline
16complement(487939..488826)PHAGE_Clostr_phiCDHM11_NC_029001: hypothetical protein; NCTC8130_00492; phage(gi971764697)1.17e-32Showinfo_outline
17complement(488907..489410)PHAGE_Lactob_phiJB_NC_022775: transcriptional regulators; NCTC8130_00493; phage(gi571797861)2.12e-41Showinfo_outline
18489846..491960PHAGE_Agroba_Atu_ph07_NC_042013: putative virion structural protein; NCTC8130_00494; phage(gi100292)1.20e-137Showinfo_outline

Region 4, total 84 CDS

#CDS PositionBLAST HitE-ValueSequence
11925963..1925993attL0.0Showinfo_outline
2complement(1927535..1927870)PHAGE_Entero_IME_EF3_NC_023595: head-tail adaptor protein; NCTC8130_01868; phage(gi589287146)8.54e-16Showinfo_outline
3complement(1927857..1928141)PHAGE_Entero_EfaCPT1_NC_025465: putative head-tail adaptor protein; NCTC8130_01869; phage(gi712916059)3.78e-13Showinfo_outline
4complement(1928195..1929718)PHAGE_Entero_IME_EF4_NC_023551: major capsid protein; NCTC8130_01870; phage(gi589893039)3.16e-53Showinfo_outline
5complement(1929711..1930886)PHAGE_Staphy_StB20_like_NC_028821: portal protein; NCTC8130_01871; phage(gi971746491)1.07e-75Showinfo_outline
6complement(1930890..1931075)Uncharacterised protein; NCTC8130_018720.0Showinfo_outline
7complement(1931041..1932735)PHAGE_Strept_315.2_NC_004585: hypothetical protein; NCTC8130_01873; phage(gi28876230)2.93e-141Showinfo_outline
8complement(1932732..1933205)PHAGE_Burkho_phi1026b_NC_005284: gp1; NCTC8130_01874; phage(gi38707891)3.29e-17Showinfo_outline
9complement(1933274..1933411)Uncharacterised protein; NCTC8130_018750.0Showinfo_outline
10complement(1933947..1934162)group 1 glycosyl transferase; NCTC8130_018760.0Showinfo_outline
11complement(1934165..1934572)Protein of uncharacterised function (DUF3206); NCTC8130_018770.0Showinfo_outline
12complement(1934887..1936494)PHAGE_Entero_IME_EFm5_NC_028826: DNA primase; NCTC8130_01878; phage(gi971746968)4.08e-33Showinfo_outline
13complement(1936491..1937369)PHAGE_Staphy_PT1028_NC_007045: ORF003; NCTC8130_01879; phage(gi66395167)5.76e-10Showinfo_outline
14complement(1937422..1937784)Uncharacterised protein; NCTC8130_018800.0Showinfo_outline
15complement(1937785..1937943)Uncharacterised protein; NCTC8130_018810.0Showinfo_outline
16complement(1937957..1938193)Uncharacterised protein; NCTC8130_018820.0Showinfo_outline
17complement(1938327..1938632)Uncharacterised protein; NCTC8130_018830.0Showinfo_outline
18complement(1938682..1938945)excisionase family DNA binding domain-containing protein; NCTC8130_018840.0Showinfo_outline
191939095..1939826PHAGE_Brevib_Jimmer2_NC_041976: hypothetical protein; NCTC8130_01885; phage(gi100017)2.05e-05Showinfo_outline
201939873..1941036PROPHAGE_Oceano_HTE831: integrase; NCTC8130_01886; phage(gi23097608)2.28e-70Showinfo_outline
211941083..1941141attL0.0Showinfo_outline
22complement(1941262..1942038)PHAGE_Lactoc_28201_NC_031013: hypothetical protein; NCTC8130_01887; phage(gi100051)1.09e-159Showinfo_outline
23complement(1942031..1942306)PHAGE_Entero_phiFL3A_NC_013648: holin; NCTC8130_01888; phage(gi281416275)3.30e-30Showinfo_outline
24complement(1942303..1942596)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein; NCTC8130_01889; phage(gi254854749)9.53e-06Showinfo_outline
25complement(1942649..1942774)PHAGE_Lister_B054_NC_009813: gp28; NCTC8130_01890; phage(gi157325312)3.78e-09Showinfo_outline
26complement(1942812..1942925)Uncharacterised protein; NCTC8130_018910.0Showinfo_outline
27complement(1942926..1943264)PHAGE_Bacill_PM1_NC_020883: hypothetical protein; NCTC8130_01892; phage(gi472438326)2.00e-06Showinfo_outline
28complement(1943281..1943676)bactriophage minor structural protein; NCTC8130_018930.0Showinfo_outline
29complement(1943718..1944791)PHAGE_Lactoc_TP901_1_NC_002747: ORF48; NCTC8130_01894; phage(gi13786579)1.19e-52Showinfo_outline
30complement(1944810..1947596)PHAGE_Lactoc_bIL285_NC_002666: endopeptidase; NCTC8130_01895; phage(gi13095734)0.0Showinfo_outline
31complement(1947593..1948312)PHAGE_Clostr_phiCT19406C_NC_029006: tail protein; NCTC8130_01896; phage(gi971821558)6.98e-06Showinfo_outline
32complement(1948309..1950612)PHAGE_Lister_LP_030_2_NC_021539: tail tape measure protein; NCTC8130_01897; phage(gi514051947)5.14e-118Showinfo_outline
33complement(1950807..1951271)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; NCTC8130_01898; phage(gi31415858)2.02e-19Showinfo_outline
34complement(1951271..1951897)PHAGE_Lactob_iA2_NC_028830: major tail protein; NCTC8130_01899; phage(gi971747639)4.16e-31Showinfo_outline
35complement(1951904..1952269)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; NCTC8130_01900; phage(gi31415856)4.04e-20Showinfo_outline
36complement(1952259..1952597)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; NCTC8130_01901; phage(gi31415855)5.59e-28Showinfo_outline
37complement(1952587..1952913)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; NCTC8130_01902; phage(gi31415854)1.72e-14Showinfo_outline
38complement(1952891..1953172)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; NCTC8130_01903; phage(gi31415853)1.04e-28Showinfo_outline
39complement(1953174..1954544)PHAGE_Bacill_phBC6A52_NC_004821: prohead protease; NCTC8130_01904; phage(gi31415852)6.07e-145Showinfo_outline
40complement(1954557..1955126)PHAGE_Clostr_phi3626_NC_003524: putative prohead protease; NCTC8130_01905; phage(gi20065968)4.57e-45Showinfo_outline
41complement(1955098..1956327)PHAGE_Bacill_phBC6A52_NC_004821: Portal protein; NCTC8130_01906; phage(gi31415850)1.20e-176Showinfo_outline
42complement(1956349..1958076)PHAGE_Bacill_phBC6A52_NC_004821: Terminase large subunit; NCTC8130_01907; phage(gi31415848)0.0Showinfo_outline
43complement(1958073..1958525)PHAGE_Bacill_phBC6A52_NC_004821: Terminase small subunit; NCTC8130_01908; phage(gi31415847)2.91e-34Showinfo_outline
44complement(1958636..1959016)PHAGE_Bacill_phBC6A52_NC_004821: endonuclease; NCTC8130_01909; phage(gi31415846)3.73e-50Showinfo_outline
45complement(1959013..1959399)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; NCTC8130_01910; phage(gi31415845)1.54e-13Showinfo_outline
46complement(1959380..1959766)Uncharacterised protein; NCTC8130_019110.0Showinfo_outline
471960147..1960386Domain of uncharacterised function (DUF1883); NCTC8130_019120.0Showinfo_outline
48complement(1960383..1960574)Uncharacterised protein; NCTC8130_019130.0Showinfo_outline
491960652..1960897Uncharacterised protein; NCTC8130_019140.0Showinfo_outline
50complement(1960851..1961024)Uncharacterised protein; NCTC8130_019150.0Showinfo_outline
51complement(1961498..1961974)PHAGE_Lactob_iA2_NC_028830: sigma-70 RNA polymerase; NCTC8130_01916; phage(gi971747677)5.64e-35Showinfo_outline
521962318..1962530Uncharacterised protein; NCTC8130_019170.0Showinfo_outline
53complement(1962558..1962752)Uncharacterised protein; NCTC8130_019180.0Showinfo_outline
54complement(1962760..1962948)Uncharacterised protein; NCTC8130_019190.0Showinfo_outline
55complement(1962945..1963520)PHAGE_Lister_B054_NC_009813: gp58; NCTC8130_01920; phage(gi157325342)5.17e-13Showinfo_outline
56complement(1963546..1963650)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; NCTC8130_01921; phage(gi281416351)3.44e-05Showinfo_outline
57complement(1963650..1964105)PHAGE_Lactoc_bIL286_NC_002667: Orf19; NCTC8130_01922; phage(gi13095762)2.45e-20Showinfo_outline
58complement(1964248..1964490)PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; NCTC8130_01923; phage(gi966198986)7.62e-06Showinfo_outline
59complement(1964487..1965335)PHAGE_Lactob_iA2_NC_028830: DNA replication protein; NCTC8130_01924; phage(gi971747669)1.48e-36Showinfo_outline
60complement(1965335..1966114)PHAGE_Lactob_iA2_NC_028830: DnaD domain-containing protein; NCTC8130_01925; phage(gi971747668)1.16e-44Showinfo_outline
61complement(1966130..1966945)PHAGE_Lactob_LF1_NC_019486: hypothetical protein; NCTC8130_01926; phage(gi418489429)6.97e-78Showinfo_outline
62complement(1966908..1967930)PHAGE_Strept_EJ_1_NC_005294: hypothetical protein; NCTC8130_01927; phage(gi39653695)5.60e-75Showinfo_outline
631967984..1968334Uncharacterised protein; NCTC8130_019280.0Showinfo_outline
64complement(1968318..1968917)Uncharacterised protein; NCTC8130_019290.0Showinfo_outline
65complement(1968920..1969114)Uncharacterised protein; NCTC8130_019300.0Showinfo_outline
66complement(1969101..1969418)Uncharacterised protein; NCTC8130_019310.0Showinfo_outline
67complement(1969468..1969692)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; NCTC8130_01932; phage(gi281416337)4.26e-20Showinfo_outline
68complement(1969692..1970021)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; NCTC8130_01933; phage(gi281416336)5.25e-06Showinfo_outline
69complement(1970053..1970721)Uncharacterised protein; NCTC8130_019340.0Showinfo_outline
70complement(1970740..1971012)Uncharacterised protein; NCTC8130_019350.0Showinfo_outline
71complement(1971026..1971292)Uncharacterised protein; NCTC8130_019360.0Showinfo_outline
72complement(1971303..1971497)PHAGE_Strept_315.4_NC_004587: hypothetical protein; NCTC8130_01937; phage(gi28876376)8.43e-13Showinfo_outline
731971802..1972221PHAGE_Bacill_phi4B1_NC_028886: DNA-binding helix-turn-helix protein; NCTC8130_01938; phage(gi971821252)2.14e-55Showinfo_outline
741972238..1972660PHAGE_Lister_vB_LmoS_188_NC_028871: hypothetical protein; NCTC8130_01939; phage(gi971750829)3.19e-43Showinfo_outline
751972689..1973630PHAGE_Entero_EFC_1_NC_025453: hypothetical protein; NCTC8130_01940; phage(gi725950514)9.92e-26Showinfo_outline
761973717..1974622PHAGE_Lactob_LfeInf_NC_029058: lysin; NCTC8130_01941; phage(gi985757326)1.30e-05Showinfo_outline
771974760..1975965PROPHAGE_Oceano_HTE831: integrase; NCTC8130_01942; phage(gi23097608)1.15e-76Showinfo_outline
781976016..1976074attR0.0Showinfo_outline
79complement(1976017..1976104)tRNA0.0Showinfo_outline
80complement(1976301..1976867)TetR family transcriptional regulator; NCTC8130_019440.0Showinfo_outline
811977122..1978450Protein of uncharacterised function (DUF1576); NCTC8130_019450.0Showinfo_outline
821978419..1978757Uncharacterised protein; NCTC8130_019460.0Showinfo_outline
83complement(1978884..1979633)PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; NCTC8130_01947; phage(gi971760361)1.42e-09Showinfo_outline
841994197..1994227attR0.0Showinfo_outline

Region 5, total 88 CDS

#CDS PositionBLAST HitE-ValueSequence
11994123..1994158attL0.0Showinfo_outline
22000445..2000467attL0.0Showinfo_outline
3complement(2005758..2006723)PHAGE_Strept_P9_NC_009819: hypothetical protein; NCTC8130_01974; phage(gi157311187)2.58e-24Showinfo_outline
4complement(2006717..2007229)PHAGE_Strept_P9_NC_009819: hypothetical protein; NCTC8130_01975; phage(gi157311186)4.48e-36Showinfo_outline
52007552..2007866Uncharacterised protein; NCTC8130_019760.0Showinfo_outline
62007866..2008027Uncharacterised protein; NCTC8130_019770.0Showinfo_outline
7complement(2008059..2009078)PHAGE_Lactob_CL2_NC_028835: endolysin; NCTC8130_01978; phage(gi971748037)6.89e-71Showinfo_outline
8complement(2009075..2009299)PHAGE_Lactoc_ul36_NC_004066: putative holin; NCTC8130_01979; phage(gi21716128)5.53e-14Showinfo_outline
9complement(2009296..2009589)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein; NCTC8130_01980; phage(gi254854749)1.37e-05Showinfo_outline
10complement(2009643..2009768)PHAGE_Lister_B054_NC_009813: gp28; NCTC8130_01981; phage(gi157325312)4.29e-09Showinfo_outline
11complement(2009806..2009919)PHAGE_Clostr_phiCD211_NC_029048: hypothetical protein; NCTC8130_01982; phage(gi981220879)5.94e-05Showinfo_outline
12complement(2009920..2010258)PHAGE_Lister_LP_030_2_NC_021539: hypothetical protein; NCTC8130_01983; phage(gi514051951)1.59e-05Showinfo_outline
13complement(2010272..2011402)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; NCTC8130_01984; phage(gi281416380)1.26e-08Showinfo_outline
14complement(2011420..2012244)PHAGE_Leucon_phiLN04_NC_020870: receptor-binding tail protein; NCTC8130_01985; phage(gi472437241)1.35e-06Showinfo_outline
15complement(2012248..2013297)PHAGE_Lister_P35_NC_009814: gp16; NCTC8130_01986; phage(gi157325381)8.78e-27Showinfo_outline
16complement(2013294..2014166)PHAGE_Lactoc_1358_NC_027120: putative phage structural protein; NCTC8130_01987; phage(gi824479770)1.12e-14Showinfo_outline
17complement(2014167..2018003)PHAGE_Entero_IME_EFm5_NC_028826: tail length tape-measure protein; NCTC8130_01988; phage(gi971746936)0.0Showinfo_outline
18complement(2018003..2018194)PHAGE_Entero_IME_EFm1_NC_024356: tail tape measure chaperone protein; NCTC8130_01989; phage(gi658310472)2.32e-06Showinfo_outline
19complement(2018218..2018529)PHAGE_Entero_vB_IME196_NC_028990: hypothetical protein; NCTC8130_01990; phage(gi971763622)4.29e-21Showinfo_outline
20complement(2018657..2019214)PHAGE_Entero_EFAP_1_NC_012419: major tail protein; NCTC8130_01991; phage(gi225626387)1.05e-46Showinfo_outline
21complement(2019230..2019601)PHAGE_Entero_IME_EFm1_NC_024356: head-tail joining protein; NCTC8130_01992; phage(gi658310469)3.44e-32Showinfo_outline
22complement(2019598..2019993)PHAGE_Entero_EFAP_1_NC_012419: head-tail joining protein; NCTC8130_01993; phage(gi225626389)2.69e-29Showinfo_outline
23complement(2019990..2020325)PHAGE_Entero_EFAP_1_NC_012419: head-tail adaptor protein; NCTC8130_01994; phage(gi225626390)5.54e-21Showinfo_outline
24complement(2020303..2020587)PHAGE_Entero_EFAP_1_NC_012419: head-tail joining protein; NCTC8130_01995; phage(gi225626391)2.43e-22Showinfo_outline
25complement(2020599..2020808)PHAGE_Lactoc_98201_NC_031064: DNA polymerase; NCTC8130_01996; phage(gi100036)7.52e-21Showinfo_outline
26complement(2020853..2022040)PHAGE_Entero_vB_IME196_NC_028990: capsid protein; NCTC8130_01997; phage(gi971763615)5.86e-104Showinfo_outline
27complement(2022082..2022633)PHAGE_Entero_IME_EFm5_NC_028826: prohead protease; NCTC8130_01998; phage(gi971746945)5.71e-66Showinfo_outline
28complement(2022575..2023759)PHAGE_Entero_EFAP_1_NC_012419: portal protein; NCTC8130_01999; phage(gi225626395)5.48e-91Showinfo_outline
29complement(2023778..2023948)PHAGE_Lactob_Lc_Nu_NC_007501: hypothetical protein; NCTC8130_02000; phage(gi77999990)1.91e-05Showinfo_outline
30complement(2023932..2025656)PHAGE_Entero_IME_EF3_NC_023595: terminase large subunit; NCTC8130_02001; phage(gi589287154)0.0Showinfo_outline
31complement(2025649..2026128)PHAGE_Entero_vB_EfaS_AL3_NC_042126: hypothetical protein; NCTC8130_02002; phage(gi100003)1.69e-61Showinfo_outline
32complement(2026294..2026668)PHAGE_Entero_EFAP_1_NC_012419: HNH endonuclease; NCTC8130_02003; phage(gi225626400)8.10e-40Showinfo_outline
33complement(2026671..2027222)Uncharacterised protein; NCTC8130_020040.0Showinfo_outline
34complement(2027287..2027514)Uncharacterised protein; NCTC8130_020050.0Showinfo_outline
35complement(2027521..2027733)PHAGE_Entero_phiFL2A_NC_013643: hypothetical protein; NCTC8130_02006; phage(gi281416527)3.15e-14Showinfo_outline
362028312..2028518PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein; NCTC8130_02007; phage(gi119953715)7.95e-18Showinfo_outline
37complement(2028762..2029181)PHAGE_Entero_phiEf11_NC_013696: phage autolysin transcriptional regulator ArpU family; NCTC8130_02008; phage(gi282598742)2.43e-67Showinfo_outline
382029496..2029747Uncharacterised protein; NCTC8130_020090.0Showinfo_outline
39complement(2029780..2030067)ArpT; NCTC8130_020100.0Showinfo_outline
40complement(2030067..2030273)Uncharacterised protein; NCTC8130_020110.0Showinfo_outline
41complement(2030270..2030467)Uncharacterised protein; NCTC8130_020120.0Showinfo_outline
42complement(2030474..2030704)PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; NCTC8130_02013; phage(gi966198996)2.11e-15Showinfo_outline
43complement(2030701..2030898)Uncharacterised protein; NCTC8130_020140.0Showinfo_outline
44complement(2030929..2031123)Uncharacterised protein; NCTC8130_020150.0Showinfo_outline
45complement(2031201..2031773)PHAGE_Entero_phiFL2A_NC_013643: hypothetical protein; NCTC8130_02016; phage(gi281416519)7.21e-19Showinfo_outline
46complement(2031785..2031919)Uncharacterised protein; NCTC8130_020170.0Showinfo_outline
47complement(2031919..2032308)PHAGE_Entero_phiFL2A_NC_013643: YopX superfamily protein; NCTC8130_02018; phage(gi281416516)4.87e-42Showinfo_outline
48complement(2032305..2032829)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; NCTC8130_02019; phage(gi9630275)5.42e-06Showinfo_outline
49complement(2032814..2033128)Uncharacterised protein; NCTC8130_020200.0Showinfo_outline
50complement(2033131..2033292)accessory regulator R; NCTC8130_020210.0Showinfo_outline
51complement(2033307..2033672)PHAGE_Lactoc_bIL286_NC_002667: Orf19; NCTC8130_02022; phage(gi13095762)7.91e-26Showinfo_outline
52complement(2033669..2034457)PHAGE_Lactob_c5_NC_019449: putative DNA replication protein; NCTC8130_02023; phage(gi418488187)2.06e-36Showinfo_outline
53complement(2034461..2035147)PHAGE_Entero_phiEf11_NC_013696: hypothetical protein; NCTC8130_02024; phage(gi282598737)9.21e-113Showinfo_outline
54complement(2035153..2035884)PHAGE_Lactoc_bIBB29_NC_011046: hypothetical protein; NCTC8130_02025; phage(gi194097557)3.49e-50Showinfo_outline
55complement(2035877..2036218)Uncharacterised protein; NCTC8130_020260.0Showinfo_outline
562036362..2036820Uncharacterised protein; NCTC8130_020270.0Showinfo_outline
57complement(2036922..2037092)succinate dehydrogenase cytochrome b558 subunit; NCTC8130_020280.0Showinfo_outline
58complement(2037105..2037332)Helix-turn-helix domain; NCTC8130_020290.0Showinfo_outline
59complement(2037347..2037712)PHAGE_Microb_Min1_NC_009603: hypothetical protein; NCTC8130_02030; phage(gi149882791)1.23e-19Showinfo_outline
602037788..2038027Domain of uncharacterised function (DUF1883); NCTC8130_020310.0Showinfo_outline
61complement(2038024..2038215)Uncharacterised protein; NCTC8130_020320.0Showinfo_outline
622038295..2038465Uncharacterised protein; NCTC8130_020330.0Showinfo_outline
63complement(2038462..2038602)Uncharacterised protein; NCTC8130_020340.0Showinfo_outline
642038680..2038988prophage pi3 protein 52; NCTC8130_020350.0Showinfo_outline
65complement(2038959..2039216)phosphomannomutase; NCTC8130_020360.0Showinfo_outline
66complement(2039228..2039998)PHAGE_Staphy_88_NC_007063: ORF019; NCTC8130_02037; phage(gi66396351)8.00e-73Showinfo_outline
67complement(2040046..2040279)PHAGE_Strept_phiARI0031_NC_031910: dsDNA binding protein; NCTC8130_02038; phage(gi100047)1.28e-18Showinfo_outline
682040421..2041128PHAGE_Strept_phiARI0031_NC_031910: hypothetical protein; NCTC8130_02039; phage(gi100050)2.01e-45Showinfo_outline
692041215..2041664PHAGE_Entero_IME_EFm1_NC_024356: hypothetical protein; NCTC8130_02040; phage(gi658310488)1.89e-12Showinfo_outline
702041773..2042915PHAGE_Strept_T12_NC_028700: site-specific recombinase; NCTC8130_02041; phage(gi966201482)4.44e-88Showinfo_outline
71complement(2043238..2043438)Uncharacterised protein; NCTC8130_020420.0Showinfo_outline
722044084..2044464PHAGE_Lactoc_ul36_NC_004066: hypothetical protein; NCTC8130_02043; phage(gi21716074)5.91e-20Showinfo_outline
73complement(2044657..2045490)putative methionine precursor/uptake ABC transporter, MtsV; NCTC8130_020440.0Showinfo_outline
74complement(2045477..2047168)PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC8130_02045; phage(gi371496158)2.15e-25Showinfo_outline
75complement(2047185..2047736)Predicted membrane protein; NCTC8130_020460.0Showinfo_outline
76complement(2047807..2048646)S-adenosyl-l-methionine hydroxide adenosyltransferase; NCTC8130_020470.0Showinfo_outline
772049220..2050020Uncharacterised protein; NCTC8130_020490.0Showinfo_outline
78complement(2050134..2050421)antibiotic biosynthesis monooxygenase family protein; NCTC8130_020500.0Showinfo_outline
79complement(2050437..2051075)MarR family transcriptional regulator; NCTC8130_020510.0Showinfo_outline
80complement(2051093..2051512)transcriptional regulator; NCTC8130_020520.0Showinfo_outline
81complement(2051762..2052025)Uncharacterised protein; NCTC8130_020530.0Showinfo_outline
82complement(2052292..2052780)GAF domain-containing protein; NCTC8130_020540.0Showinfo_outline
83complement(2053001..2053711)alpha-acetolactate decarboxylase; NCTC8130_020550.0Showinfo_outline
84complement(2053724..2055388)acetolactate synthase; NCTC8130_020560.0Showinfo_outline
852055641..2055663attR0.0Showinfo_outline
86complement(2055812..2056330)N-acetyltransferase GCN5; NCTC8130_020570.0Showinfo_outline
872056435..2057394PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; NCTC8130_02058; phage(gi588498272)5.19e-45Showinfo_outline
882058402..2058437attR0.0Showinfo_outline

Region 6, total 75 CDS

#CDS PositionBLAST HitE-ValueSequence
12590209..2590220attL0.0Showinfo_outline
22591521..2591532attL0.0Showinfo_outline
3complement(2595022..2596038)PHAGE_Entero_PMBT2_NC_042101: hypothetical protein; NCTC8130_02584; phage(gi100020)3.94e-60Showinfo_outline
4complement(2596049..2596312)Phage holin; NCTC8130_025850.0Showinfo_outline
5complement(2596327..2596533)Protein of uncharacterised function (DUF2762); NCTC8130_025860.0Showinfo_outline
6complement(2596579..2596704)PHAGE_Lister_B054_NC_009813: gp28; NCTC8130_02587; phage(gi157325312)4.29e-09Showinfo_outline
7complement(2596742..2596855)PHAGE_Clostr_phiCD211_NC_029048: hypothetical protein; NCTC8130_02588; phage(gi981220879)5.94e-05Showinfo_outline
8complement(2596856..2597194)PHAGE_Lister_LP_030_2_NC_021539: hypothetical protein; NCTC8130_02589; phage(gi514051951)1.59e-05Showinfo_outline
9complement(2597208..2598338)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; NCTC8130_02590; phage(gi281416380)6.13e-09Showinfo_outline
10complement(2598356..2599180)PHAGE_Leucon_phiLN04_NC_020870: receptor-binding tail protein; NCTC8130_02591; phage(gi472437241)1.02e-05Showinfo_outline
11complement(2599184..2600233)PHAGE_Lister_P35_NC_009814: gp16; NCTC8130_02592; phage(gi157325381)4.94e-27Showinfo_outline
12complement(2600230..2601102)PHAGE_Lactoc_1358_NC_027120: putative phage structural protein; NCTC8130_02593; phage(gi824479770)1.06e-16Showinfo_outline
13complement(2601106..2607513)PHAGE_Lactob_A2_NC_004112: tape measure protein; NCTC8130_02594; phage(gi22296534)0.0Showinfo_outline
14complement(2607708..2608019)Uncharacterised protein; NCTC8130_025950.0Showinfo_outline
15complement(2608081..2608422)PHAGE_Entero_phiEf11_NC_013696: putative phage major tail protein; NCTC8130_02596; phage(gi282598736)5.08e-16Showinfo_outline
16complement(2608495..2609055)PHAGE_Lister_B025_NC_009812: Tsh; NCTC8130_02597; phage(gi157325228)1.72e-33Showinfo_outline
17complement(2609158..2609568)PHAGE_Lister_B025_NC_009812: gp10; NCTC8130_02598; phage(gi157325227)3.89e-30Showinfo_outline
18complement(2609565..2609969)PHAGE_Lister_B025_NC_009812: gp9; NCTC8130_02599; phage(gi157325225)8.21e-25Showinfo_outline
19complement(2609962..2610342)PHAGE_Lister_B025_NC_009812: gp8; NCTC8130_02600; phage(gi157325226)3.87e-45Showinfo_outline
20complement(2610323..2610577)PHAGE_Lister_B025_NC_009812: gp7; NCTC8130_02601; phage(gi157325224)4.82e-16Showinfo_outline
21complement(2610691..2611806)PHAGE_Staphy_phiBU01_NC_026016: capsid protein; NCTC8130_02602; phage(gi744692789)4.79e-176Showinfo_outline
22complement(2611832..2612539)PHAGE_Lister_B025_NC_009812: gp4; NCTC8130_02603; phage(gi157325221)3.59e-85Showinfo_outline
23complement(2612520..2613674)PHAGE_Lister_B025_NC_009812: gp3; NCTC8130_02604; phage(gi157325220)4.09e-112Showinfo_outline
24complement(2613700..2615343)PHAGE_Lister_B025_NC_009812: putative terminase large subunit; NCTC8130_02605; phage(gi157325219)0.0Showinfo_outline
25complement(2615340..2615699)PHAGE_Staphy_77_NC_005356: 77ORF037; NCTC8130_02606; phage(gi41189549)8.29e-37Showinfo_outline
26complement(2615822..2616016)Uncharacterised protein; NCTC8130_026070.0Showinfo_outline
27complement(2616003..2616314)PHAGE_Lister_B025_NC_009812: gp65; NCTC8130_02608; phage(gi157325282)6.46e-26Showinfo_outline
28complement(2616315..2616764)Uncharacterised protein; NCTC8130_026090.0Showinfo_outline
29complement(2617183..2617395)PHAGE_Entero_phiFL2A_NC_013643: hypothetical protein; NCTC8130_02610; phage(gi281416527)2.94e-13Showinfo_outline
30complement(2617801..2618760)PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; NCTC8130_02611; phage(gi588498272)5.91e-41Showinfo_outline
312618973..2619212Domain of uncharacterised function (DUF1883); NCTC8130_026120.0Showinfo_outline
32complement(2619209..2619400)Uncharacterised protein; NCTC8130_026130.0Showinfo_outline
332619478..2619723Uncharacterised protein; NCTC8130_026140.0Showinfo_outline
34complement(2619677..2619850)Uncharacterised protein; NCTC8130_026150.0Showinfo_outline
35complement(2620094..2620507)PHAGE_Entero_phiEf11_NC_013696: phage autolysin transcriptional regulator ArpU family; NCTC8130_02616; phage(gi282598742)1.87e-78Showinfo_outline
36complement(2620602..2620760)Uncharacterised protein; NCTC8130_026170.0Showinfo_outline
37complement(2620750..2621049)ArpT; NCTC8130_026180.0Showinfo_outline
38complement(2621049..2621420)Uncharacterised protein; NCTC8130_026190.0Showinfo_outline
39complement(2621417..2621824)PHAGE_Entero_EFLK1_NC_029026: hypothetical protein; NCTC8130_02620; phage(gi971766805)1.77e-07Showinfo_outline
40complement(2621826..2622050)Uncharacterised protein; NCTC8130_026210.0Showinfo_outline
41complement(2622064..2622246)PHAGE_Entero_phiEF24C_NC_009904: hypothetical protein; NCTC8130_02622; phage(gi158079404)6.27e-08Showinfo_outline
42complement(2622243..2622461)Uncharacterised protein; NCTC8130_026230.0Showinfo_outline
43complement(2622473..2622751)PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; NCTC8130_02624; phage(gi966198995)4.31e-47Showinfo_outline
44complement(2622748..2622909)PHAGE_Entero_IMEEF1_NC_041959: hypothetical protein; NCTC8130_02625; phage(gi100076)5.20e-27Showinfo_outline
45complement(2622906..2623322)PHAGE_Entero_phiFL2A_NC_013643: YopX superfamily protein; NCTC8130_02626; phage(gi281416516)4.02e-47Showinfo_outline
46complement(2623319..2623564)cobalamin biosynthesis protein CobD; NCTC8130_026270.0Showinfo_outline
47complement(2623561..2623872)PHAGE_Staphy_phiIPLA_C1C_NC_028962: NTP pyrophosphohydrolase; NCTC8130_02628; phage(gi971761287)1.78e-36Showinfo_outline
48complement(2623869..2624171)Uncharacterised protein; NCTC8130_026290.0Showinfo_outline
49complement(2624174..2624335)accessory regulator R; NCTC8130_026300.0Showinfo_outline
50complement(2624350..2624709)PHAGE_Lactoc_bIL286_NC_002667: Orf19; NCTC8130_02631; phage(gi13095762)2.71e-24Showinfo_outline
51complement(2624706..2625557)PHAGE_Lactob_iA2_NC_028830: DNA replication protein; NCTC8130_02632; phage(gi971747669)1.56e-30Showinfo_outline
52complement(2625579..2626388)PHAGE_Clostr_phiCT19406C_NC_029006: replisome organizer; NCTC8130_02633; phage(gi971821522)2.77e-41Showinfo_outline
53complement(2626440..2626715)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; NCTC8130_02634; phage(gi85701412)4.26e-18Showinfo_outline
54complement(2626719..2626955)Uncharacterised protein; NCTC8130_026350.0Showinfo_outline
55complement(2626997..2627203)Uncharacterised protein; NCTC8130_026360.0Showinfo_outline
56complement(2627217..2627993)PHAGE_Bacill_phi4J1_NC_029008: hypothetical protein; NCTC8130_02637; phage(gi971821578)5.52e-64Showinfo_outline
57complement(2627990..2628166)succinate dehydrogenase cytochrome b558 subunit; NCTC8130_026380.0Showinfo_outline
58complement(2628142..2628393)Helix-turn-helix domain protein; NCTC8130_026390.0Showinfo_outline
59complement(2628413..2628616)Helix-turn-helix domain protein; NCTC8130_026400.0Showinfo_outline
60complement(2628796..2628954)Uncharacterised protein; NCTC8130_026410.0Showinfo_outline
612629006..2629194Uncharacterised protein; NCTC8130_026420.0Showinfo_outline
62complement(2629191..2629346)PHAGE_Brocho_BL3_NC_015254: gp35; NCTC8130_02643; phage(gi327409427)5.25e-07Showinfo_outline
63complement(2629476..2630324)PHAGE_Entero_EFDG1_NC_029009: hypothetical protein; NCTC8130_02644; phage(gi971765195)8.84e-20Showinfo_outline
64complement(2630321..2631229)PHAGE_Strept_5093_NC_012753: hypothetical protein; NCTC8130_02645; phage(gi238801925)3.36e-49Showinfo_outline
65complement(2631241..2632008)PHAGE_Staphy_47_NC_007054: ORF017; NCTC8130_02646; phage(gi66395673)7.45e-75Showinfo_outline
662632087..2632326Domain of uncharacterised function (DUF1883); NCTC8130_026470.0Showinfo_outline
67complement(2632323..2632514)Uncharacterised protein; NCTC8130_026480.0Showinfo_outline
682632594..2632764Uncharacterised protein; NCTC8130_026490.0Showinfo_outline
69complement(2632761..2632901)Uncharacterised protein; NCTC8130_026500.0Showinfo_outline
702633201..2633521PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; NCTC8130_02651; phage(gi100029)6.34e-18Showinfo_outline
712633539..2633961PHAGE_Lactoc_98201_NC_031064: hypothetical protein; NCTC8130_02652; phage(gi100003)2.41e-07Showinfo_outline
722634048..2634059attR0.0Showinfo_outline
732634052..2634636Telomeric repeat-binding factor 2; NCTC8130_026530.0Showinfo_outline
742634755..2635966PHAGE_Lister_vB_LmoS_293_NC_028929: integrase; NCTC8130_02654; phage(gi971756906)1.86e-43Showinfo_outline
752636217..2636228attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 3078716 bps
Phages: 6
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download