Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGJY00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGJY00000000.1.PHASTER.zip

gi|00000000|ref|UGJY00000000.1| Klebsiella pneumoniae strain NCTC13698, whole genome shotgun 5589625, gc%: 56.89%

Download summary as .txt file: summary.txt file_download

Total: 9 prophage regions have been identified, of which 3 regions are intact, 3 regions are incomplete, and 3 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
127.3Kbincomplete5010279878-307213 info_outlinePHAGE_Entero_P1_NC_005856(3)48.79%Show info_outline
219.8Kbquestionable7021394283-414090 info_outlinePHAGE_Entero_P1_NC_005856(2)51.22%Show info_outline
311.1Kbquestionable7012436795-447902 info_outlinePHAGE_Entero_P1_NC_005856(2)52.33%Show info_outline
458.4Kbintact15054943995-1002454 info_outlinePHAGE_Entero_phiP27_NC_003356(9)54.40%Show info_outline
518.2Kbquestionable80191808929-1827174 info_outlinePHAGE_Salmon_ST64B_NC_004313(3)48.80%Show info_outline
649.6Kbintact140732814218-2863855 info_outlinePHAGE_Vibrio_pYD38_A_NC_021534(13)52.16%Show info_outline
78.8Kbincomplete4094318834-4327705 info_outlinePHAGE_Entero_P1_NC_005856(2)57.92%Show info_outline
84.2Kbincomplete3065120485-5124755 info_outlinePHAGE_Entero_P1_NC_005856(2)58.93%Show info_outline
949.9Kbintact150545476081-5526079 info_outlinePHAGE_Entero_HK140_NC_019710(11)50.44%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGJY00000000.1| Klebsiella pneumoniae strain NCTC13698, whole genome shotgun 5589625, gc%: 56.89%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 12 CDS

#CDS PositionBLAST HitE-ValueSequence
1279878..279906attL0.0Showinfo_outline
2complement(280493..285352)PHAGE_Synech_ACG_2014b_NC_027130: helicase; NCTC13698_00304; phage(gi827047942)1.17e-12Showinfo_outline
3complement(285769..286446)PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; NCTC13698_00305; phage(gi41057343)5.79e-158Showinfo_outline
4complement(286639..286941)PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; NCTC13698_00306; phage(gi24373865)1.91e-09Showinfo_outline
5complement(287479..287856)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13698_00307; phage(gi557307573)1.10e-82Showinfo_outline
6complement(289327..289704)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13698_00308; phage(gi557307573)1.57e-81Showinfo_outline
7complement(289749..290024)PHAGE_Entero_P1_NC_005856: InsA; NCTC13698_00309; phage(gi46401643)2.11e-58Showinfo_outline
8290310..290549RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE); NCTC13698_003100.0Showinfo_outline
9290549..290836RelE/StbE replicon stabilization toxin; NCTC13698_003110.0Showinfo_outline
10290908..291066PHAGE_Entero_933W_NC_000924: host killer protein; NCTC13698_00312; phage(gi9632541)2.87e-08Showinfo_outline
11complement(292182..292757)PHAGE_Ralsto_RSM3_NC_011399: hypothetical protein; NCTC13698_00313; phage(gi209901327)2.10e-61Showinfo_outline
12307213..307241attR0.0Showinfo_outline

Region 2, total 23 CDS

#CDS PositionBLAST HitE-ValueSequence
1394283..394294attL0.0Showinfo_outline
2complement(394438..395232)PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; NCTC13698_00438; phage(gi764159894)5.56e-07Showinfo_outline
3complement(395420..395746)Uncharacterised protein; NCTC13698_004390.0Showinfo_outline
4complement(395883..396425)Uncharacterised protein; NCTC13698_004400.0Showinfo_outline
5complement(396612..396917)plasmid maintenance protein CcdB; NCTC13698_004410.0Showinfo_outline
6complement(396919..397137)plasmid maintenance protein CcdA; NCTC13698_004420.0Showinfo_outline
7397733..398002Uncharacterised protein; NCTC13698_004430.0Showinfo_outline
8397990..398565putative plasmid-like protein; NCTC13698_004440.0Showinfo_outline
9398596..399090Uncharacterised protein; NCTC13698_004450.0Showinfo_outline
10399134..399502Uncharacterised protein; NCTC13698_004460.0Showinfo_outline
11399536..399739hemolysin expression-modulating protein; NCTC13698_004470.0Showinfo_outline
12399753..399983Uncharacterised protein; NCTC13698_004480.0Showinfo_outline
13400010..400354Uncharacterised protein; NCTC13698_004490.0Showinfo_outline
14complement(400578..401210)ornithine cyclodeaminase; NCTC13698_004500.0Showinfo_outline
15401390..401521Uncharacterised protein; NCTC13698_004510.0Showinfo_outline
16401626..401901PHAGE_Entero_P1_NC_005856: InsA; NCTC13698_00452; phage(gi46401643)1.87e-59Showinfo_outline
17401946..402323PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13698_00453; phage(gi557307573)1.57e-81Showinfo_outline
18complement(402258..403625)putative transporter; NCTC13698_004540.0Showinfo_outline
19complement(404333..404710)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13698_00455; phage(gi557307573)1.57e-81Showinfo_outline
20complement(404755..405030)PHAGE_Entero_P1_NC_005856: InsA; NCTC13698_00456; phage(gi46401643)1.23e-59Showinfo_outline
21405306..405479PROPHAGE_Escher_CFT073: transposase insC; NCTC13698_00457; phage(gi26250372)1.83e-33Showinfo_outline
22complement(405489..406457)PROPHAGE_Escher_CFT073: transposase; NCTC13698_00458; phage(gi26248352)7.88e-10Showinfo_outline
23414090..414101attR0.0Showinfo_outline

Region 3, total 12 CDS

#CDS PositionBLAST HitE-ValueSequence
1436795..437169PHAGE_Entero_phiP27_NC_003356: putative endolysin; NCTC13698_00489; phage(gi18249894)1.23e-63Showinfo_outline
2437367..437522PHAGE_Entero_933W_NC_000924: host killer protein; NCTC13698_00490; phage(gi9632541)2.64e-06Showinfo_outline
3437646..438674PROPHAGE_Shewan_MR-1: ISSod13, transposase; NCTC13698_00491; phage(gi24375047)0.0Showinfo_outline
4438708..438983PHAGE_Entero_P1_NC_005856: InsA; NCTC13698_00492; phage(gi46401643)1.87e-59Showinfo_outline
5439028..439405PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13698_00493; phage(gi557307573)1.57e-81Showinfo_outline
6complement(439399..442296)PROPHAGE_Xantho_33913: Tn5041 transposase; NCTC13698_00494; phage(gi21231545)6.83e-30Showinfo_outline
7complement(442318..444708)PHAGE_Vibrio_SIO_2_NC_016567: hypothetical protein; NCTC13698_00495; phage(gi371496406)9.22e-28Showinfo_outline
8complement(444736..445311)PHAGE_Ralsto_RSM3_NC_011399: hypothetical protein; NCTC13698_00496; phage(gi209901327)1.02e-60Showinfo_outline
9complement(445340..445921)helicase, RecD/TraA family; NCTC13698_004970.0Showinfo_outline
10complement(445961..446602)Protein of uncharacterised function (DUF2913); NCTC13698_004980.0Showinfo_outline
11complement(446625..447572)PROPHAGE_Escher_MG1655: predicted transposase; NCTC13698_00499; phage(gi16131287)1.18e-118Showinfo_outline
12complement(447576..447902)PHAGE_Salmon_118970_sal1_NC_031930: prohead core protein protease; NCTC13698_00500; phage(gi100061)5.27e-13Showinfo_outline

Region 4, total 56 CDS

#CDS PositionBLAST HitE-ValueSequence
1943995..944006attL0.0Showinfo_outline
2complement(952145..953398)PHAGE_Entero_phiP27_NC_003356: putative integrase; NCTC13698_00985; phage(gi18249865)0.0Showinfo_outline
3complement(953454..953687)PHAGE_Entero_phiP27_NC_003356: putative excisionase; NCTC13698_00986; phage(gi18249866)1.07e-34Showinfo_outline
4complement(953745..953957)Uncharacterised protein; NCTC13698_009870.0Showinfo_outline
5complement(953954..954178)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC13698_00988; phage(gi169257161)5.40e-25Showinfo_outline
6complement(954168..954875)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC13698_00989; phage(gi18249878)4.96e-99Showinfo_outline
7complement(954884..955462)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC13698_00990; phage(gi18249870)7.59e-55Showinfo_outline
8complement(955507..956334)PHAGE_Entero_phiP27_NC_003356: putative serine protease; NCTC13698_00991; phage(gi18249869)1.59e-167Showinfo_outline
9complement(956331..956525)PHAGE_Cronob_vB_CsaM_GAP31_NC_019400: hypothetical protein; NCTC13698_00992; phage(gi414086809)4.52e-05Showinfo_outline
10complement(956522..956938)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC13698_00993; phage(gi169257164)1.59e-45Showinfo_outline
11complement(956935..957153)Uncharacterised protein; NCTC13698_009940.0Showinfo_outline
12complement(957125..957382)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC13698_00995; phage(gi169257165)1.92e-07Showinfo_outline
13complement(957386..957721)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC13698_00996; phage(gi169257166)5.05e-07Showinfo_outline
14complement(957702..957938)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC13698_00997; phage(gi169257167)1.76e-07Showinfo_outline
15complement(957941..958063)Uncharacterised protein; NCTC13698_009980.0Showinfo_outline
16complement(958050..958565)PHAGE_Strept_phiNJ2_NC_019418: hypothetical protein; NCTC13698_00999; phage(gi414090251)5.76e-32Showinfo_outline
17complement(958633..959052)Uncharacterised protein; NCTC13698_010000.0Showinfo_outline
18complement(959049..959255)Uncharacterised protein; NCTC13698_010010.0Showinfo_outline
19complement(959252..959455)Uncharacterised protein; NCTC13698_010020.0Showinfo_outline
20complement(959609..960328)PHAGE_Erwini_phiEt88_NC_015295: phage repressor protein; NCTC13698_01003; phage(gi327198606)2.43e-81Showinfo_outline
21960664..961410Uncharacterised protein; NCTC13698_010040.0Showinfo_outline
22961428..962177PHAGE_Entero_SfV_NC_003444: replication protein; NCTC13698_01005; phage(gi19549026)1.39e-110Showinfo_outline
23962189..963067PHAGE_Entero_phiP27_NC_003356: putative replication protein DnaC; NCTC13698_01006; phage(gi18249882)1.04e-110Showinfo_outline
24963064..964443PHAGE_Entero_phiP27_NC_003356: putative helicase; NCTC13698_01007; phage(gi18249883)0.0Showinfo_outline
25964430..964798PHAGE_Escher_HK639_NC_016158: Rus Holliday junction resolvase; NCTC13698_01008; phage(gi356870665)1.06e-49Showinfo_outline
26964871..965272PHAGE_Entero_phiP27_NC_003356: putative antitermination protein Q; NCTC13698_01009; phage(gi18249885)6.17e-32Showinfo_outline
27complement(965537..965995)PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC13698_01010; phage(gi557307562)3.30e-18Showinfo_outline
28966214..966525PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC13698_01011; phage(gi24371577)7.45e-48Showinfo_outline
29966522..967061PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC13698_01012; phage(gi422935930)1.44e-82Showinfo_outline
30967058..967402PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864: holin; NCTC13698_01013; phage(gi388542661)1.19e-09Showinfo_outline
31967399..967674PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13698_01014; phage(gi428782715)5.12e-35Showinfo_outline
32967619..967816PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13698_01015; phage(gi428782716)1.57e-18Showinfo_outline
33968142..968387PHAGE_Entero_ST104_NC_005841: hypothetical protein; NCTC13698_01016; phage(gi46358693)4.84e-09Showinfo_outline
34968966..969316PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC13698_01017; phage(gi18249898)8.31e-58Showinfo_outline
35969475..969972PHAGE_Entero_mEp235_NC_019708: terminase small subunit; NCTC13698_01018; phage(gi428781811)2.07e-82Showinfo_outline
36969976..971727PHAGE_Entero_mEp235_NC_019708: terminase large subunit; NCTC13698_01019; phage(gi428781812)0.0Showinfo_outline
37971724..971885membrane protein; NCTC13698_010200.0Showinfo_outline
38971875..973101PHAGE_Entero_SfV_NC_003444: portal protein; NCTC13698_01021; phage(gi19548993)0.0Showinfo_outline
39973094..973693PHAGE_Entero_SfV_NC_003444: capsid protease; NCTC13698_01022; phage(gi19548994)1.57e-119Showinfo_outline
40973703..974941PHAGE_Entero_SfV_NC_003444: capsid; NCTC13698_01023; phage(gi19548995)0.0Showinfo_outline
41975019..975336PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; NCTC13698_01024; phage(gi526244642)9.25e-26Showinfo_outline
42975345..975683PHAGE_Entero_mEp234_NC_019715: head-tail connector II; NCTC13698_01025; phage(gi428782261)1.28e-49Showinfo_outline
43975680..976129PHAGE_Entero_HK97_NC_002167: Gp10; NCTC13698_01026; phage(gi9634169)8.79e-89Showinfo_outline
44976126..976473PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13698_01027; phage(gi428782673)2.48e-43Showinfo_outline
45976529..977233PHAGE_Entero_mEp234_NC_019715: major tail subunit; NCTC13698_01028; phage(gi428782264)2.29e-109Showinfo_outline
46977303..977668PHAGE_Escher_HK75_NC_016160: tail assembly chaperone; NCTC13698_01029; phage(gi356870688)1.03e-39Showinfo_outline
47977671..977976PHAGE_Entero_HK106_NC_019768: tail protein; NCTC13698_01030; phage(gi428783291)2.64e-40Showinfo_outline
48978376..981957PHAGE_Entero_HK544_NC_019767: tail length tape measure protein; NCTC13698_01031; phage(gi428783229)0.0Showinfo_outline
49981978..982451PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC13698_01032; phage(gi209552438)5.63e-46Showinfo_outline
50982438..982914PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC13698_01033; phage(gi985757717)4.34e-37Showinfo_outline
51982927..983307PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC13698_01034; phage(gi374531303)6.68e-21Showinfo_outline
52983304..986381PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC13698_01035; phage(gi985757719)1.19e-74Showinfo_outline
53986457..988961PHAGE_Staphy_EW_NC_007056: ORF002; NCTC13698_01036; phage(gi66395809)9.34e-41Showinfo_outline
54989035..989274PHAGE_Entero_HK225_NC_019717: hypothetical protein; NCTC13698_01037; phage(gi428782404)3.27e-24Showinfo_outline
55989274..989591PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13698_01038; phage(gi428782690)1.63e-28Showinfo_outline
561002454..1002465attR0.0Showinfo_outline

Region 5, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
11808929..1810749PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; NCTC13698_01810; phage(gi331028036)3.51e-37Showinfo_outline
2complement(1810849..1811355)G:T/U mismatch-specific uracil/thymine DNA-glycosylase; NCTC13698_018110.0Showinfo_outline
31811480..1811555tRNA0.0Showinfo_outline
41811510..1811542attL0.0Showinfo_outline
5complement(1811668..1813119)Predicted ATPase; NCTC13698_018130.0Showinfo_outline
6complement(1813235..1814896)PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; NCTC13698_01814; phage(gi100002)2.59e-102Showinfo_outline
7complement(1814880..1815236)PHAGE_Psychr_Psymv2_NC_023734: terminase small subunit; NCTC13698_01815; phage(gi593779760)5.27e-18Showinfo_outline
8complement(1815955..1816248)PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; NCTC13698_01816; phage(gi526244642)1.18e-07Showinfo_outline
9complement(1816241..1816579)PHAGE_Entero_HK97_NC_002167: putative head-tail adaptor; NCTC13698_01817; phage(gi9634168)1.65e-19Showinfo_outline
10complement(1816576..1817811)PHAGE_Shigel_SfIV_NC_022749: portal protein; NCTC13698_01818; phage(gi557307529)2.08e-58Showinfo_outline
11complement(1817813..1818373)PHAGE_Clostr_phi3626_NC_003524: putative prohead protease; NCTC13698_01819; phage(gi20065968)1.18e-32Showinfo_outline
12complement(1818424..1819590)PHAGE_Salmon_ST64B_NC_004313: Major capsid protein precursor; NCTC13698_01820; phage(gi23505451)3.39e-62Showinfo_outline
131819846..1820169Uncharacterised protein; NCTC13698_018210.0Showinfo_outline
141820411..1820620Uncharacterised protein; NCTC13698_018220.0Showinfo_outline
15complement(1820673..1820918)Uncharacterised protein; NCTC13698_018230.0Showinfo_outline
16complement(1821198..1823018)PHAGE_Entero_P4_NC_001609: DNA primase; NCTC13698_01824; phage(gi9627512)8.88e-158Showinfo_outline
17complement(1823015..1823383)Uncharacterised protein; NCTC13698_018250.0Showinfo_outline
18complement(1823380..1823634)Uncharacterised protein; NCTC13698_018260.0Showinfo_outline
19complement(1823627..1824490)Uncharacterised protein; NCTC13698_018270.0Showinfo_outline
20complement(1824853..1825578)Uncharacterised protein; NCTC13698_018280.0Showinfo_outline
21complement(1825571..1827031)PHAGE_Escher_HK75_NC_016160: phage integrase family protein; NCTC13698_01829; phage(gi356870702)2.08e-10Showinfo_outline
221827174..1827206attR0.0Showinfo_outline

Region 6, total 81 CDS

#CDS PositionBLAST HitE-ValueSequence
12814218..2814240attL0.0Showinfo_outline
2complement(2814318..2814572)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13698_02820; phage(gi428782341)2.00e-23Showinfo_outline
3complement(2814569..2814739)PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; NCTC13698_02821; phage(gi100049)3.73e-07Showinfo_outline
4complement(2814736..2814909)PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC13698_02822; phage(gi157165988)1.54e-17Showinfo_outline
5complement(2814876..2815034)PHAGE_Escher_TL_2011b_NC_019445: hypothetical protein; NCTC13698_02823; phage(gi418487639)1.38e-14Showinfo_outline
6complement(2815031..2815201)PHAGE_Serrat_Eta_NC_021563: hypothetical protein; NCTC13698_02824; phage(gi514361067)2.40e-15Showinfo_outline
7complement(2815198..2815362)PHAGE_Serrat_Eta_NC_021563: hypothetical protein; NCTC13698_02825; phage(gi514361067)1.60e-16Showinfo_outline
8complement(2815359..2815631)PHAGE_Entero_HK446_NC_019714: hypothetical protein; NCTC13698_02826; phage(gi428782222)3.05e-32Showinfo_outline
9complement(2815628..2815741)Uncharacterised protein; NCTC13698_028270.0Showinfo_outline
10complement(2815845..2816372)PHAGE_Entero_933W_NC_000924: putative DNA N-6-adenine-methyltransferase; NCTC13698_02828; phage(gi9632500)4.06e-71Showinfo_outline
11complement(2816369..2816527)PHAGE_Entero_933W_NC_000924: hypothetical protein; NCTC13698_02829; phage(gi9632478)3.07e-16Showinfo_outline
12complement(2816524..2817204)PHAGE_Cronob_ENT47670_NC_019927: exonuclease; NCTC13698_02830; phage(gi431810511)7.86e-148Showinfo_outline
13complement(2817201..2818046)PHAGE_Ralsto_RSK1_NC_022915: putative phage recombination protein; NCTC13698_02831; phage(gi560186064)2.61e-80Showinfo_outline
14complement(2818062..2818346)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13698_02832; phage(gi356870640)2.90e-52Showinfo_outline
15complement(2818435..2818629)Uncharacterised protein; NCTC13698_028330.0Showinfo_outline
162819058..2819261PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC13698_02834; phage(gi100018)5.32e-22Showinfo_outline
17complement(2819296..2819511)PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC13698_02835; phage(gi157166005)3.29e-31Showinfo_outline
18complement(2819697..2820365)PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC13698_02836; phage(gi157166006)7.18e-108Showinfo_outline
19complement(2820804..2821514)PHAGE_Entero_HK140_NC_019710: prophage repressor; NCTC13698_02837; phage(gi428781988)8.66e-129Showinfo_outline
20complement(2821631..2821792)Uncharacterised protein; NCTC13698_028380.0Showinfo_outline
212821890..2822111PHAGE_Entero_mEp213_NC_019720: CII protein; NCTC13698_02839; phage(gi428782643)7.99e-10Showinfo_outline
222822197..2822343Uncharacterised protein; NCTC13698_028400.0Showinfo_outline
232822336..2823421PHAGE_Erwini_phiEt88_NC_015295: phage replication protein O; NCTC13698_02841; phage(gi327198609)1.34e-110Showinfo_outline
242823418..2824791PHAGE_Erwini_phiEt88_NC_015295: Replicative DNA helicase; NCTC13698_02842; phage(gi327198610)0.0Showinfo_outline
252824781..2825095PHAGE_Entero_SfI_NC_027339: Ren protein; NCTC13698_02843; phage(gi849250273)5.82e-29Showinfo_outline
262825092..2825538PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC13698_02844; phage(gi514051016)1.66e-21Showinfo_outline
272825535..2825729PHAGE_Pseudo_F8_NC_007810: hypothetical protein ORF085; NCTC13698_02845; phage(gi149408398)1.88e-07Showinfo_outline
282825726..2826187Uncharacterised protein; NCTC13698_028460.0Showinfo_outline
292826351..2826644PHAGE_Salmon_SETP13_NC_022752: EaA protein; NCTC13698_02847; phage(gi557307718)3.01e-11Showinfo_outline
302827028..2827426Uncharacterised protein; NCTC13698_028480.0Showinfo_outline
312827941..2829089PROPHAGE_Escher_Sakai: putative transposase; NCTC13698_02849; phage(gi38704244)0.0Showinfo_outline
322829779..2830084PHAGE_Escher_HK639_NC_016158: DNA pol III theta; NCTC13698_02850; phage(gi356870660)3.11e-19Showinfo_outline
332830150..2830746PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC13698_02851; phage(gi423262437)1.42e-62Showinfo_outline
342830746..2830919PHAGE_Escher_HK639_NC_016158: NinE; NCTC13698_02852; phage(gi356870663)6.75e-15Showinfo_outline
352830916..2831584PHAGE_Entero_HK225_NC_019717: NinI protein; NCTC13698_02853; phage(gi428782438)5.19e-137Showinfo_outline
362831577..2832212PHAGE_Entero_phi80_NC_021190: DNA junction-specific endonuclease Rap; NCTC13698_02854; phage(gi824479632)1.21e-113Showinfo_outline
372832209..2832349PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; NCTC13698_02855; phage(gi169257245)9.06e-13Showinfo_outline
382832346..2832846PHAGE_Escher_HK639_NC_016158: Q antitermination protein; NCTC13698_02856; phage(gi356870666)1.89e-113Showinfo_outline
392833262..2833336tRNA0.0Showinfo_outline
402833343..2833418tRNA0.0Showinfo_outline
412833424..2833499tRNA0.0Showinfo_outline
422833505..2833581tRNA0.0Showinfo_outline
432833586..2833660tRNA0.0Showinfo_outline
442833855..2834169PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC13698_02862; phage(gi423262443)5.43e-62Showinfo_outline
452834172..2834675PHAGE_Salmon_vB_SemP_Emek_NC_018275: lysin; NCTC13698_02863; phage(gi399498856)1.18e-97Showinfo_outline
462834672..2835139PHAGE_Salmon_HK620_NC_002730: endopeptidase; NCTC13698_02864; phage(gi13559860)1.76e-76Showinfo_outline
472835142..2835279Uncharacterised protein; NCTC13698_028650.0Showinfo_outline
482835348..2835491Uncharacterised protein; NCTC13698_028660.0Showinfo_outline
492835614..2835808Uncharacterised protein; NCTC13698_028670.0Showinfo_outline
502835816..2836235PHAGE_Entero_ES18_NC_006949: gp1; NCTC13698_02868; phage(gi62362214)2.73e-73Showinfo_outline
512836232..2837530PHAGE_Salmon_SPN3UB_NC_019545: terminase large subunit; NCTC13698_02869; phage(gi423262379)0.0Showinfo_outline
522837543..2839012PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13698_02870; phage(gi431810500)0.0Showinfo_outline
532839044..2839952PHAGE_Cronob_ENT47670_NC_019927: phage head morphogenesis; NCTC13698_02871; phage(gi431810507)4.28e-151Showinfo_outline
542840663..2842018PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13698_02872; phage(gi431810499)2.04e-161Showinfo_outline
552842018..2842479PHAGE_Salmon_II_E1_NC_010495: putative capsid decoration protein; NCTC13698_02873; phage(gi170676292)1.38e-39Showinfo_outline
562842476..2843531PHAGE_Salmon_II_E1_NC_010495: putative coat protein; NCTC13698_02874; phage(gi170676293)9.10e-128Showinfo_outline
572843564..2843818Uncharacterised protein; NCTC13698_028750.0Showinfo_outline
582843821..2844201PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13698_02876; phage(gi431810531)2.57e-40Showinfo_outline
592844201..2844374PHAGE_Entero_ES18_NC_006949: gp12; NCTC13698_02877; phage(gi62362225)2.28e-17Showinfo_outline
602844374..2844736PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; NCTC13698_02878; phage(gi971749596)7.50e-27Showinfo_outline
612844739..2845164PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC13698_02879; phage(gi514050969)4.48e-39Showinfo_outline
622845161..2845553PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13698_02880; phage(gi431810530)1.78e-43Showinfo_outline
632845622..2846374PHAGE_Cronob_ENT47670_NC_019927: major tail subunit; NCTC13698_02881; phage(gi431810520)1.52e-41Showinfo_outline
642846427..2847104PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13698_02882; phage(gi431810508)2.50e-95Showinfo_outline
652847280..2848035PHAGE_Entero_mEpX1_NC_019709: hypothetical protein; NCTC13698_02883; phage(gi428781933)1.35e-75Showinfo_outline
662848038..2848292PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13698_02884; phage(gi428781870)4.15e-29Showinfo_outline
672848367..2848642Uncharacterised protein; NCTC13698_028850.0Showinfo_outline
682848729..2849757Uncharacterised protein; NCTC13698_028860.0Showinfo_outline
692849824..2853288PHAGE_Vibrio_pYD38_A_NC_021534: tail length tape measure protein; NCTC13698_02887; phage(gi514051037)0.0Showinfo_outline
702853288..2853833PHAGE_Burkho_KS9_NC_013055: hypothetical protein gp48; NCTC13698_02888; phage(gi255033731)9.50e-17Showinfo_outline
71complement(2854038..2854208)ATP-NAD/AcoX kinase; NCTC13698_028890.0Showinfo_outline
722854321..2854797PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13698_02890; phage(gi431810519)9.15e-50Showinfo_outline
732854797..2855267PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13698_02891; phage(gi431810518)4.73e-35Showinfo_outline
742855264..2855659PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13698_02892; phage(gi431810526)1.18e-45Showinfo_outline
752855646..2858123PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC13698_02893; phage(gi431810495)0.0Showinfo_outline
762858210..2860738PHAGE_Staphy_phiRS7_NC_022914: tail fiber protein; NCTC13698_02894; phage(gi560185974)5.32e-08Showinfo_outline
77complement(2860950..2862044)PHAGE_Entero_mEp460_NC_019716: integrase; NCTC13698_02895; phage(gi428782338)4.20e-180Showinfo_outline
782862216..2862238attR0.0Showinfo_outline
792862231..2863172tRNA dihydrouridine synthase A; NCTC13698_028960.0Showinfo_outline
802863312..2863551inner membrane protein; NCTC13698_028970.0Showinfo_outline
812863580..2863855PHAGE_Entero_P1_NC_005856: InsA; NCTC13698_02898; phage(gi46401643)1.87e-59Showinfo_outline

Region 7, total 9 CDS

#CDS PositionBLAST HitE-ValueSequence
14318834..4319109PHAGE_Entero_P1_NC_005856: InsA; NCTC13698_04331; phage(gi46401643)1.23e-59Showinfo_outline
24319154..4319531PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13698_04332; phage(gi557307573)1.57e-81Showinfo_outline
34319776..4320033PHAGE_Erwini_vB_EamM_Kwan_NC_031010: short tail fibers; NCTC13698_04333; phage(gi100183)5.51e-08Showinfo_outline
4complement(4320162..4321121)LysM domain/ErfK/YbiS/YcfS/YnhG family protein; NCTC13698_043340.0Showinfo_outline
5complement(4321251..4321628)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13698_04335; phage(gi557307573)1.57e-81Showinfo_outline
6complement(4321673..4321948)PHAGE_Entero_P1_NC_005856: InsA; NCTC13698_04336; phage(gi46401643)1.23e-59Showinfo_outline
7complement(4322061..4325507)PHAGE_Vibrio_pYD21_A_NC_020846: helicase; NCTC13698_04337; phage(gi472340490)1.72e-05Showinfo_outline
84325803..4327011lipoprotein releasing system transmembrane protein LolC; NCTC13698_043380.0Showinfo_outline
94327004..4327705PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC13698_04339; phage(gi371496158)2.00e-42Showinfo_outline

Region 8, total 6 CDS

#CDS PositionBLAST HitE-ValueSequence
15120485..5121153PHAGE_Synech_S_CAM9_NC_031922: baseplate wedge subunit and tail pin; NCTC13698_05161; phage(gi100182)2.73e-06Showinfo_outline
25121303..5122064PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; NCTC13698_05162; phage(gi971760361)6.87e-06Showinfo_outline
35122156..5122746PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; NCTC13698_05163; phage(gi100017)6.44e-08Showinfo_outline
45122976..5123251PHAGE_Entero_P1_NC_005856: InsA; NCTC13698_05164; phage(gi46401643)1.87e-59Showinfo_outline
55123296..5123673PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13698_05165; phage(gi557307573)1.57e-81Showinfo_outline
6complement(5123667..5124755)PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC13698_05166; phage(gi371496158)1.38e-34Showinfo_outline

Region 9, total 58 CDS

#CDS PositionBLAST HitE-ValueSequence
15476081..5476145attL0.0Showinfo_outline
2complement(5485096..5488173)PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC13698_05523; phage(gi985757719)1.72e-75Showinfo_outline
3complement(5488170..5488550)PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC13698_05524; phage(gi374531303)6.68e-21Showinfo_outline
4complement(5488563..5489039)PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC13698_05525; phage(gi985757717)4.34e-37Showinfo_outline
5complement(5489026..5489499)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC13698_05526; phage(gi209552438)4.95e-46Showinfo_outline
6complement(5489520..5493125)PHAGE_Entero_HK544_NC_019767: tail length tape measure protein; NCTC13698_05527; phage(gi428783229)0.0Showinfo_outline
7complement(5493752..5494057)PHAGE_Entero_HK106_NC_019768: tail protein; NCTC13698_05528; phage(gi428783291)2.83e-38Showinfo_outline
8complement(5494060..5494464)PHAGE_Entero_HK446_NC_019714: tail assembly chaperone; NCTC13698_05529; phage(gi428782205)7.75e-45Showinfo_outline
9complement(5494495..5495199)PHAGE_Entero_mEp234_NC_019715: major tail subunit; NCTC13698_05530; phage(gi428782264)3.58e-109Showinfo_outline
105495382..5496233transposase-like protein; NCTC13698_055310.0Showinfo_outline
11complement(5496243..5496947)PHAGE_Entero_HK022_NC_002166: tail length tape measure protein; NCTC13698_05532; phage(gi9634134)3.29e-100Showinfo_outline
12complement(5497525..5497788)PHAGE_Entero_HK022_NC_002166: lambda gpT analog; NCTC13698_05533; phage(gi9634133)4.58e-28Showinfo_outline
13complement(5497821..5498174)PHAGE_Entero_HK022_NC_002166: lambda gpG analog; NCTC13698_05534; phage(gi9634132)2.62e-47Showinfo_outline
14complement(5498218..5498709)PHAGE_Entero_HK022_NC_002166: major tail subunit; NCTC13698_05535; phage(gi9634131)6.09e-80Showinfo_outline
15complement(5498766..5499131)PHAGE_Entero_HK022_NC_002166: gp11; NCTC13698_05536; phage(gi9634130)2.89e-63Showinfo_outline
16complement(5499128..5499667)PHAGE_Entero_HK022_NC_002166: gp10; NCTC13698_05537; phage(gi9634129)1.18e-103Showinfo_outline
17complement(5499660..5499992)PHAGE_Entero_HK022_NC_002166: gp9; NCTC13698_05538; phage(gi9634128)9.74e-68Showinfo_outline
18complement(5500252..5500578)PHAGE_Entero_mEp235_NC_019708: head-tail connector II; NCTC13698_05539; phage(gi428781817)7.58e-14Showinfo_outline
19complement(5500805..5501968)PHAGE_Entero_HK022_NC_002166: major capsid subunit precursor; NCTC13698_05540; phage(gi9634124)0.0Showinfo_outline
20complement(5501980..5502648)PHAGE_Entero_HK022_NC_002166: head maturation protease; NCTC13698_05541; phage(gi9634123)5.19e-110Showinfo_outline
21complement(5502666..5503943)PHAGE_Entero_HK022_NC_002166: head portal protein; NCTC13698_05542; phage(gi9634122)0.0Showinfo_outline
22complement(5503946..5505478)PHAGE_Pseudo_PAJU2_NC_011373: putative terminase; NCTC13698_05543; phage(gi209552421)0.0Showinfo_outline
23complement(5505488..5505922)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC13698_05544; phage(gi209552420)7.67e-34Showinfo_outline
24complement(5506044..5506253)PHAGE_Escher_HK75_NC_016160: hypothetical protein; NCTC13698_05545; phage(gi356870735)6.68e-11Showinfo_outline
25complement(5506266..5506556)PHAGE_Rhizob_16_3_NC_011103: holin; NCTC13698_05546; phage(gi195546640)7.39e-25Showinfo_outline
26complement(5506906..5507151)PHAGE_Entero_ST104_NC_005841: hypothetical protein; NCTC13698_05547; phage(gi46358693)3.92e-11Showinfo_outline
27complement(5507555..5507749)PHAGE_Escher_vB_EcoS_FFH1_NC_024139: hypothetical protein; NCTC13698_05548; phage(gi640884327)1.02e-24Showinfo_outline
28complement(5507822..5508043)DNA gyrase subunit beta; NCTC13698_055490.0Showinfo_outline
29complement(5508061..5508225)Uncharacterised protein; NCTC13698_055500.0Showinfo_outline
30complement(5508497..5508790)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13698_05551; phage(gi356870672)4.17e-43Showinfo_outline
31complement(5508932..5509207)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13698_05552; phage(gi428782715)8.16e-35Showinfo_outline
32complement(5509204..5509554)PHAGE_Stenot_vB_SmaS_DLP_2_NC_029019: holin; NCTC13698_05553; phage(gi971766266)1.46e-08Showinfo_outline
33complement(5509551..5510090)PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC13698_05554; phage(gi422935930)1.44e-79Showinfo_outline
34complement(5510087..5510398)PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC13698_05555; phage(gi24371577)7.45e-48Showinfo_outline
35complement(5511037..5511615)PHAGE_Entero_HK629_NC_019711: late gene regulator Q; NCTC13698_05557; phage(gi428782072)1.13e-05Showinfo_outline
36complement(5511629..5512285)PHAGE_Salmon_118970_sal3_NC_031940: site-specific RNA endonuclease; NCTC13698_05558; phage(gi100127)5.26e-111Showinfo_outline
37complement(5512245..5512538)PHAGE_Entero_cdtI_NC_009514: hypothetical protein; NCTC13698_05559; phage(gi148609433)3.36e-32Showinfo_outline
38complement(5512623..5513000)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC13698_05560; phage(gi100062)4.39e-65Showinfo_outline
39complement(5513010..5513819)PHAGE_Salmon_118970_sal3_NC_031940: prohead core protein protease; NCTC13698_05561; phage(gi100061)2.89e-141Showinfo_outline
40complement(5513816..5514706)PHAGE_Shigel_SfII_NC_021857: O protein family protein; NCTC13698_05562; phage(gi526244675)3.75e-156Showinfo_outline
41complement(5515113..5515580)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13698_05563; phage(gi428782704)1.55e-90Showinfo_outline
42complement(5515603..5516073)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13698_05564; phage(gi428782703)2.85e-13Showinfo_outline
43complement(5516108..5516305)PHAGE_Entero_mEp390_NC_019721: prophage anti-repressor; NCTC13698_05565; phage(gi428782702)5.82e-37Showinfo_outline
445516404..5517060PHAGE_Entero_mEp390_NC_019721: prophage repressor; NCTC13698_05566; phage(gi428782701)1.21e-139Showinfo_outline
455517799..5518716PHAGE_Vibrio_X29_NC_024369: DNA recombination-dependent growth factor C; NCTC13698_05567; phage(gi658311187)6.75e-14Showinfo_outline
465518806..5519105PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13698_05568; phage(gi428782699)1.10e-19Showinfo_outline
475519105..5519890PHAGE_Burkho_KS9_NC_013055: chromosome partitioning protein gp35; NCTC13698_05569; phage(gi255033718)3.25e-80Showinfo_outline
485519887..5520021Uncharacterised protein; NCTC13698_055700.0Showinfo_outline
495520767..5520973Uncharacterised protein; NCTC13698_055710.0Showinfo_outline
50complement(5520984..5521361)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13698_05572; phage(gi557307573)1.57e-81Showinfo_outline
51complement(5521406..5521681)PHAGE_Entero_P1_NC_005856: InsA; NCTC13698_05573; phage(gi46401643)1.23e-59Showinfo_outline
525522171..5522398PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; NCTC13698_05574; phage(gi23505473)4.84e-39Showinfo_outline
535522400..5523392PHAGE_Salmon_ST64B_NC_004313: Integrase protein; NCTC13698_05575; phage(gi23505472)0.0Showinfo_outline
545523503..5523567attR0.0Showinfo_outline
55complement(5523505..5523594)tRNA0.0Showinfo_outline
565523688..5524485inner membrane protein; NCTC13698_055770.0Showinfo_outline
575524586..5524661tRNA0.0Showinfo_outline
585524823..5526079PROPHAGE_Escher_CFT073: prophage P4 integrase; NCTC13698_05579; phage(gi26248270)0.0Showinfo_outline
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5589625 bps
Phages: 9
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download