Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGKD00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGKD00000000.1.PHASTER.zip

gi|00000000|ref|UGKD00000000.1| Klebsiella pneumoniae strain NCTC13701, whole genome shotgun 5603228, gc%: 56.91%

Download summary as .txt file: summary.txt file_download

Total: 11 prophage regions have been identified, of which 5 regions are intact, 3 regions are incomplete, and 3 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
18.8Kbincomplete4091451388-1460259 info_outlinePHAGE_Entero_P1_NC_005856(2)57.92%Show info_outline
24.2Kbincomplete3062254520-2258790 info_outlinePHAGE_Entero_P1_NC_005856(2)58.93%Show info_outline
355.2Kbintact150602614874-2670161 info_outlinePHAGE_Salmon_118970_sal3_NC_031940(11)50.56%Show info_outline
451.7Kbintact150543089670-3141389 info_outlinePHAGE_Entero_phiP27_NC_003356(9)53.83%Show info_outline
518.2Kbquestionable80193854456-3872742 info_outlinePHAGE_Salmon_ST64B_NC_004313(3)48.81%Show info_outline
647.1Kbintact150734946142-4993244 info_outlinePHAGE_Vibrio_pYD38_A_NC_021534(13)51.99%Show info_outline
737.2Kbquestionable70135036153-5073358 info_outlinePHAGE_Entero_P1_NC_005856(3)46.13%Show info_outline
846.9Kbquestionable90335204586-5251555 info_outlinePHAGE_Entero_P1_NC_005856(5)49.58%Show info_outline
952Kbincomplete60505346505-5398549 info_outlinePHAGE_Entero_P1_NC_005856(4)53.29%Show info_outline
1043.6Kbintact120305498857-5542515 info_outlinePHAGE_Entero_P1_NC_005856(3)49.19%Show info_outline
1149.7Kbintact150395543256-5592997 info_outlinePHAGE_Vibrio_pYD38_A_NC_021534(5)52.98%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGKD00000000.1| Klebsiella pneumoniae strain NCTC13701, whole genome shotgun 5603228, gc%: 56.91%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 9 CDS

#CDS PositionBLAST HitE-ValueSequence
11451388..1451663PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_01438; phage(gi46401643)1.23e-59Showinfo_outline
21451708..1452085PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13701_01439; phage(gi557307573)1.57e-81Showinfo_outline
31452330..1452587PHAGE_Erwini_vB_EamM_Kwan_NC_031010: short tail fibers; NCTC13701_01440; phage(gi100183)5.51e-08Showinfo_outline
4complement(1452716..1453675)LysM domain/ErfK/YbiS/YcfS/YnhG family protein; NCTC13701_014410.0Showinfo_outline
5complement(1453805..1454182)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13701_01442; phage(gi557307573)1.57e-81Showinfo_outline
6complement(1454227..1454502)PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_01443; phage(gi46401643)1.23e-59Showinfo_outline
7complement(1454615..1458061)PHAGE_Vibrio_pYD21_A_NC_020846: helicase; NCTC13701_01444; phage(gi472340490)1.72e-05Showinfo_outline
81458357..1459565lipoprotein releasing system transmembrane protein LolC; NCTC13701_014450.0Showinfo_outline
91459558..1460259PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC13701_01446; phage(gi371496158)2.00e-42Showinfo_outline

Region 2, total 6 CDS

#CDS PositionBLAST HitE-ValueSequence
12254520..2255188PHAGE_Synech_S_CAM9_NC_031922: baseplate wedge subunit and tail pin; NCTC13701_02271; phage(gi100182)2.73e-06Showinfo_outline
22255338..2256099PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; NCTC13701_02272; phage(gi971760361)6.87e-06Showinfo_outline
32256191..2256781PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; NCTC13701_02273; phage(gi100017)6.44e-08Showinfo_outline
42257011..2257286PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_02274; phage(gi46401643)1.87e-59Showinfo_outline
52257331..2257708PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13701_02275; phage(gi557307573)1.57e-81Showinfo_outline
6complement(2257702..2258790)PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC13701_02276; phage(gi371496158)1.38e-34Showinfo_outline

Region 3, total 66 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(2614874..2616922)PHAGE_Vibrio_VvAW1_NC_020488: hypothetical protein; NCTC13701_02627; phage(gi460042928)5.72e-12Showinfo_outline
2complement(2617000..2620077)PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC13701_02628; phage(gi985757719)1.77e-75Showinfo_outline
3complement(2620074..2620454)PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC13701_02629; phage(gi374531303)6.68e-21Showinfo_outline
4complement(2620467..2620943)PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC13701_02630; phage(gi985757717)4.34e-37Showinfo_outline
5complement(2620930..2621403)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC13701_02631; phage(gi209552438)5.63e-46Showinfo_outline
6complement(2621424..2623004)PHAGE_Entero_HK446_NC_019714: tail length tape measure protein H; NCTC13701_02632; phage(gi428782207)1.98e-136Showinfo_outline
72623047..2623199Uncharacterised protein; NCTC13701_026330.0Showinfo_outline
82623228..2623503PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_02634; phage(gi46401643)2.11e-58Showinfo_outline
92623545..2623573attL0.0Showinfo_outline
102623548..2623925PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13701_02635; phage(gi557307573)1.78e-81Showinfo_outline
11complement(2623860..2625809)PHAGE_Entero_BP_4795_NC_004813: putative tail component; NCTC13701_02636; phage(gi157166052)0.0Showinfo_outline
12complement(2626436..2626741)PHAGE_Entero_HK106_NC_019768: tail protein; NCTC13701_02637; phage(gi428783291)2.83e-38Showinfo_outline
13complement(2626744..2627148)PHAGE_Entero_HK446_NC_019714: tail assembly chaperone; NCTC13701_02638; phage(gi428782205)7.75e-45Showinfo_outline
14complement(2627179..2627883)PHAGE_Entero_mEp234_NC_019715: major tail subunit; NCTC13701_02639; phage(gi428782264)3.58e-109Showinfo_outline
152628066..2628917transposase-like protein; NCTC13701_026400.0Showinfo_outline
16complement(2628927..2629631)PHAGE_Entero_HK022_NC_002166: tail length tape measure protein; NCTC13701_02641; phage(gi9634134)3.29e-100Showinfo_outline
17complement(2630209..2630472)PHAGE_Entero_HK022_NC_002166: lambda gpT analog; NCTC13701_02642; phage(gi9634133)4.58e-28Showinfo_outline
18complement(2630505..2630858)PHAGE_Entero_HK022_NC_002166: lambda gpG analog; NCTC13701_02643; phage(gi9634132)2.62e-47Showinfo_outline
19complement(2630902..2631393)PHAGE_Entero_HK022_NC_002166: major tail subunit; NCTC13701_02644; phage(gi9634131)6.09e-80Showinfo_outline
20complement(2631450..2631815)PHAGE_Entero_HK022_NC_002166: gp11; NCTC13701_02645; phage(gi9634130)2.89e-63Showinfo_outline
21complement(2631812..2632351)PHAGE_Entero_HK022_NC_002166: gp10; NCTC13701_02646; phage(gi9634129)1.18e-103Showinfo_outline
22complement(2632344..2632676)PHAGE_Entero_HK022_NC_002166: gp9; NCTC13701_02647; phage(gi9634128)9.74e-68Showinfo_outline
23complement(2632936..2633262)PHAGE_Entero_mEp235_NC_019708: head-tail connector II; NCTC13701_02648; phage(gi428781817)7.58e-14Showinfo_outline
24complement(2633489..2634652)PHAGE_Entero_HK022_NC_002166: major capsid subunit precursor; NCTC13701_02649; phage(gi9634124)0.0Showinfo_outline
25complement(2634664..2635332)PHAGE_Entero_HK022_NC_002166: head maturation protease; NCTC13701_02650; phage(gi9634123)5.19e-110Showinfo_outline
26complement(2635350..2636627)PHAGE_Entero_HK022_NC_002166: head portal protein; NCTC13701_02651; phage(gi9634122)0.0Showinfo_outline
27complement(2636630..2638162)PHAGE_Pseudo_PAJU2_NC_011373: putative terminase; NCTC13701_02652; phage(gi209552421)0.0Showinfo_outline
28complement(2638172..2638606)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC13701_02653; phage(gi209552420)7.67e-34Showinfo_outline
29complement(2638728..2638937)PHAGE_Escher_HK75_NC_016160: hypothetical protein; NCTC13701_02654; phage(gi356870735)6.68e-11Showinfo_outline
30complement(2638950..2639240)PHAGE_Rhizob_16_3_NC_011103: holin; NCTC13701_02655; phage(gi195546640)7.39e-25Showinfo_outline
31complement(2639590..2639835)PHAGE_Entero_ST104_NC_005841: hypothetical protein; NCTC13701_02656; phage(gi46358693)3.92e-11Showinfo_outline
32complement(2640239..2640433)PHAGE_Escher_vB_EcoS_FFH1_NC_024139: hypothetical protein; NCTC13701_02657; phage(gi640884327)1.02e-24Showinfo_outline
33complement(2640506..2640727)DNA gyrase subunit beta; NCTC13701_026580.0Showinfo_outline
34complement(2640745..2640909)Uncharacterised protein; NCTC13701_026590.0Showinfo_outline
35complement(2641181..2641474)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13701_02660; phage(gi356870672)4.17e-43Showinfo_outline
36complement(2641616..2641891)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13701_02661; phage(gi428782715)8.16e-35Showinfo_outline
37complement(2641888..2642238)PHAGE_Stenot_vB_SmaS_DLP_2_NC_029019: holin; NCTC13701_02662; phage(gi971766266)1.46e-08Showinfo_outline
38complement(2642235..2642774)PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC13701_02663; phage(gi422935930)1.44e-79Showinfo_outline
39complement(2642771..2643082)PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC13701_02664; phage(gi24371577)7.45e-48Showinfo_outline
40complement(2643721..2644299)PHAGE_Entero_HK629_NC_019711: late gene regulator Q; NCTC13701_02666; phage(gi428782072)1.13e-05Showinfo_outline
41complement(2644313..2644969)PHAGE_Salmon_118970_sal3_NC_031940: site-specific RNA endonuclease; NCTC13701_02667; phage(gi100127)5.26e-111Showinfo_outline
42complement(2644929..2645294)PHAGE_Shigel_SfII_NC_021857: hypothetical protein; NCTC13701_02668; phage(gi526244681)4.56e-47Showinfo_outline
43complement(2645307..2645684)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC13701_02669; phage(gi100062)4.39e-65Showinfo_outline
44complement(2645694..2646503)PHAGE_Salmon_118970_sal3_NC_031940: prohead core protein protease; NCTC13701_02670; phage(gi100061)2.89e-141Showinfo_outline
45complement(2646500..2647390)PHAGE_Shigel_SfII_NC_021857: O protein family protein; NCTC13701_02671; phage(gi526244675)3.75e-156Showinfo_outline
46complement(2647380..2647559)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC13701_02672; phage(gi100119)7.16e-13Showinfo_outline
47complement(2647797..2648264)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13701_02673; phage(gi428782704)1.55e-90Showinfo_outline
48complement(2648287..2648757)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13701_02674; phage(gi428782703)2.85e-13Showinfo_outline
49complement(2648792..2648989)PHAGE_Entero_mEp390_NC_019721: prophage anti-repressor; NCTC13701_02675; phage(gi428782702)5.82e-37Showinfo_outline
502649088..2649744PHAGE_Entero_mEp390_NC_019721: prophage repressor; NCTC13701_02676; phage(gi428782701)1.21e-139Showinfo_outline
512650483..2651400PHAGE_Vibrio_X29_NC_024369: DNA recombination-dependent growth factor C; NCTC13701_02677; phage(gi658311187)6.75e-14Showinfo_outline
522651490..2651789PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13701_02678; phage(gi428782699)1.10e-19Showinfo_outline
532651789..2652574PHAGE_Burkho_KS9_NC_013055: chromosome partitioning protein gp35; NCTC13701_02679; phage(gi255033718)3.25e-80Showinfo_outline
542652571..2652705Uncharacterised protein; NCTC13701_026800.0Showinfo_outline
552653451..2653657Uncharacterised protein; NCTC13701_026810.0Showinfo_outline
56complement(2653668..2654045)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13701_02682; phage(gi557307573)1.57e-81Showinfo_outline
57complement(2654090..2654365)PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_02683; phage(gi46401643)1.23e-59Showinfo_outline
582654855..2655082PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; NCTC13701_02684; phage(gi23505473)4.84e-39Showinfo_outline
592655084..2656076PHAGE_Salmon_ST64B_NC_004313: Integrase protein; NCTC13701_02685; phage(gi23505472)0.0Showinfo_outline
602656132..2656143attL0.0Showinfo_outline
61complement(2656189..2656278)tRNA0.0Showinfo_outline
622656372..2657169inner membrane protein; NCTC13701_026870.0Showinfo_outline
632657270..2657345tRNA0.0Showinfo_outline
642657507..2658763PROPHAGE_Escher_CFT073: prophage P4 integrase; NCTC13701_02689; phage(gi26248270)0.0Showinfo_outline
652667686..2667697attR0.0Showinfo_outline
662670161..2670189attR0.0Showinfo_outline

Region 4, total 56 CDS

#CDS PositionBLAST HitE-ValueSequence
13089670..3089681attL0.0Showinfo_outline
2complement(3089732..3090985)PHAGE_Entero_phiP27_NC_003356: putative integrase; NCTC13701_03094; phage(gi18249865)0.0Showinfo_outline
3complement(3091041..3091274)PHAGE_Entero_phiP27_NC_003356: putative excisionase; NCTC13701_03095; phage(gi18249866)1.07e-34Showinfo_outline
4complement(3091332..3091544)Uncharacterised protein; NCTC13701_030960.0Showinfo_outline
5complement(3091541..3091765)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC13701_03097; phage(gi169257161)5.40e-25Showinfo_outline
6complement(3091755..3092462)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC13701_03098; phage(gi18249878)4.96e-99Showinfo_outline
7complement(3092471..3093049)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC13701_03099; phage(gi18249870)7.59e-55Showinfo_outline
8complement(3093094..3093921)PHAGE_Entero_phiP27_NC_003356: putative serine protease; NCTC13701_03100; phage(gi18249869)1.59e-167Showinfo_outline
9complement(3093918..3094112)PHAGE_Cronob_vB_CsaM_GAP31_NC_019400: hypothetical protein; NCTC13701_03101; phage(gi414086809)4.52e-05Showinfo_outline
10complement(3094109..3094525)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC13701_03102; phage(gi169257164)1.59e-45Showinfo_outline
11complement(3094522..3094740)Uncharacterised protein; NCTC13701_031030.0Showinfo_outline
12complement(3094712..3094969)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC13701_03104; phage(gi169257165)1.92e-07Showinfo_outline
13complement(3094973..3095308)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC13701_03105; phage(gi169257166)5.05e-07Showinfo_outline
14complement(3095289..3095525)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC13701_03106; phage(gi169257167)1.76e-07Showinfo_outline
15complement(3095528..3095650)Uncharacterised protein; NCTC13701_031070.0Showinfo_outline
16complement(3095637..3096152)PHAGE_Strept_phiNJ2_NC_019418: hypothetical protein; NCTC13701_03108; phage(gi414090251)5.76e-32Showinfo_outline
17complement(3096220..3096639)Uncharacterised protein; NCTC13701_031090.0Showinfo_outline
18complement(3096636..3096842)Uncharacterised protein; NCTC13701_031100.0Showinfo_outline
19complement(3096839..3097042)Uncharacterised protein; NCTC13701_031110.0Showinfo_outline
20complement(3097196..3097915)PHAGE_Erwini_phiEt88_NC_015295: phage repressor protein; NCTC13701_03112; phage(gi327198606)2.43e-81Showinfo_outline
213098251..3098997Uncharacterised protein; NCTC13701_031130.0Showinfo_outline
223099015..3099830PHAGE_Salmon_ST64B_NC_004313: putative replication protein; NCTC13701_03114; phage(gi23505486)1.29e-122Showinfo_outline
233099842..3100720PHAGE_Entero_phiP27_NC_003356: putative replication protein DnaC; NCTC13701_03115; phage(gi18249882)1.04e-110Showinfo_outline
243100717..3102096PHAGE_Entero_phiP27_NC_003356: putative helicase; NCTC13701_03116; phage(gi18249883)0.0Showinfo_outline
253102083..3102451PHAGE_Escher_HK639_NC_016158: Rus Holliday junction resolvase; NCTC13701_03117; phage(gi356870665)1.06e-49Showinfo_outline
263102524..3102925PHAGE_Entero_phiP27_NC_003356: putative antitermination protein Q; NCTC13701_03118; phage(gi18249885)6.17e-32Showinfo_outline
27complement(3103190..3103648)PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC13701_03119; phage(gi557307562)3.30e-18Showinfo_outline
283103867..3104178PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC13701_03120; phage(gi24371577)7.45e-48Showinfo_outline
293104175..3104714PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC13701_03121; phage(gi422935930)1.44e-82Showinfo_outline
303104711..3105055PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864: holin; NCTC13701_03122; phage(gi388542661)1.19e-09Showinfo_outline
313105052..3105327PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13701_03123; phage(gi428782715)5.12e-35Showinfo_outline
323105272..3105469PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13701_03124; phage(gi428782716)1.57e-18Showinfo_outline
333105795..3106040PHAGE_Entero_ST104_NC_005841: hypothetical protein; NCTC13701_03125; phage(gi46358693)4.84e-09Showinfo_outline
343106619..3106969PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC13701_03126; phage(gi18249898)8.31e-58Showinfo_outline
353107128..3107625PHAGE_Entero_mEp235_NC_019708: terminase small subunit; NCTC13701_03127; phage(gi428781811)2.07e-82Showinfo_outline
363107629..3109380PHAGE_Entero_mEp235_NC_019708: terminase large subunit; NCTC13701_03128; phage(gi428781812)0.0Showinfo_outline
373109377..3109538membrane protein; NCTC13701_031290.0Showinfo_outline
383109528..3110754PHAGE_Entero_SfV_NC_003444: portal protein; NCTC13701_03130; phage(gi19548993)0.0Showinfo_outline
393110747..3111346PHAGE_Entero_SfV_NC_003444: capsid protease; NCTC13701_03131; phage(gi19548994)1.57e-119Showinfo_outline
403111356..3112594PHAGE_Entero_SfV_NC_003444: capsid; NCTC13701_03132; phage(gi19548995)0.0Showinfo_outline
413112672..3112989PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; NCTC13701_03133; phage(gi526244642)9.25e-26Showinfo_outline
423112998..3113336PHAGE_Entero_mEp234_NC_019715: head-tail connector II; NCTC13701_03134; phage(gi428782261)1.28e-49Showinfo_outline
433113333..3113782PHAGE_Entero_HK97_NC_002167: Gp10; NCTC13701_03135; phage(gi9634169)8.79e-89Showinfo_outline
443113779..3114126PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13701_03136; phage(gi428782673)2.48e-43Showinfo_outline
453114182..3114886PHAGE_Entero_mEp234_NC_019715: major tail subunit; NCTC13701_03137; phage(gi428782264)2.29e-109Showinfo_outline
463114956..3115321PHAGE_Escher_HK75_NC_016160: tail assembly chaperone; NCTC13701_03138; phage(gi356870688)1.03e-39Showinfo_outline
473115324..3115629PHAGE_Entero_HK106_NC_019768: tail protein; NCTC13701_03139; phage(gi428783291)2.64e-40Showinfo_outline
483116029..3119610PHAGE_Entero_HK544_NC_019767: tail length tape measure protein; NCTC13701_03140; phage(gi428783229)0.0Showinfo_outline
493119631..3120104PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC13701_03141; phage(gi209552438)5.63e-46Showinfo_outline
503120091..3120567PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC13701_03142; phage(gi985757717)4.34e-37Showinfo_outline
513120580..3120960PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC13701_03143; phage(gi374531303)6.68e-21Showinfo_outline
523120957..3124034PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC13701_03144; phage(gi985757719)1.19e-74Showinfo_outline
533124110..3126614PHAGE_Staphy_EW_NC_007056: ORF002; NCTC13701_03145; phage(gi66395809)9.34e-41Showinfo_outline
543126688..3126927PHAGE_Entero_HK225_NC_019717: hypothetical protein; NCTC13701_03146; phage(gi428782404)3.27e-24Showinfo_outline
553126927..3127244PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13701_03147; phage(gi428782690)1.63e-28Showinfo_outline
563141389..3141400attR0.0Showinfo_outline

Region 5, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
13854456..3854497attL0.0Showinfo_outline
23854640..3856100PHAGE_Escher_HK75_NC_016160: phage integrase family protein; NCTC13701_03832; phage(gi356870702)2.08e-10Showinfo_outline
33856093..3856818Uncharacterised protein; NCTC13701_038330.0Showinfo_outline
43857181..3858044Uncharacterised protein; NCTC13701_038340.0Showinfo_outline
53858037..3858291Uncharacterised protein; NCTC13701_038350.0Showinfo_outline
63858288..3858656Uncharacterised protein; NCTC13701_038360.0Showinfo_outline
73858653..3860473PHAGE_Entero_P4_NC_001609: DNA primase; NCTC13701_03837; phage(gi9627512)8.88e-158Showinfo_outline
83860753..3860998Uncharacterised protein; NCTC13701_038380.0Showinfo_outline
9complement(3861051..3861260)Uncharacterised protein; NCTC13701_038390.0Showinfo_outline
10complement(3861502..3861825)Uncharacterised protein; NCTC13701_038400.0Showinfo_outline
113862081..3863247PHAGE_Salmon_ST64B_NC_004313: Major capsid protein precursor; NCTC13701_03841; phage(gi23505451)3.39e-62Showinfo_outline
123863298..3863858PHAGE_Clostr_phi3626_NC_003524: putative prohead protease; NCTC13701_03842; phage(gi20065968)1.18e-32Showinfo_outline
133863860..3865095PHAGE_Shigel_SfIV_NC_022749: portal protein; NCTC13701_03843; phage(gi557307529)2.08e-58Showinfo_outline
143865092..3865430PHAGE_Entero_HK97_NC_002167: putative head-tail adaptor; NCTC13701_03844; phage(gi9634168)1.65e-19Showinfo_outline
153865423..3865716PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; NCTC13701_03845; phage(gi526244642)1.18e-07Showinfo_outline
163866435..3866791PHAGE_Psychr_Psymv2_NC_023734: terminase small subunit; NCTC13701_03846; phage(gi593779760)5.27e-18Showinfo_outline
173866775..3868436PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; NCTC13701_03847; phage(gi100002)2.59e-102Showinfo_outline
183868552..3870003Predicted ATPase; NCTC13701_038480.0Showinfo_outline
19complement(3870116..3870191)tRNA0.0Showinfo_outline
203870120..3870161attR0.0Showinfo_outline
213870316..3870822G:T/U mismatch-specific uracil/thymine DNA-glycosylase; NCTC13701_038500.0Showinfo_outline
22complement(3870922..3872742)PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; NCTC13701_03851; phage(gi331028036)3.51e-37Showinfo_outline

Region 6, total 73 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(4946142..4946396)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13701_04921; phage(gi428782341)2.00e-23Showinfo_outline
2complement(4946393..4946563)PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; NCTC13701_04922; phage(gi100049)3.73e-07Showinfo_outline
3complement(4946560..4946733)PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC13701_04923; phage(gi157165988)1.54e-17Showinfo_outline
4complement(4946700..4946858)PHAGE_Escher_TL_2011b_NC_019445: hypothetical protein; NCTC13701_04924; phage(gi418487639)1.38e-14Showinfo_outline
5complement(4946855..4947025)PHAGE_Serrat_Eta_NC_021563: hypothetical protein; NCTC13701_04925; phage(gi514361067)2.40e-15Showinfo_outline
6complement(4947022..4947186)PHAGE_Serrat_Eta_NC_021563: hypothetical protein; NCTC13701_04926; phage(gi514361067)1.60e-16Showinfo_outline
7complement(4947183..4947455)PHAGE_Entero_HK446_NC_019714: hypothetical protein; NCTC13701_04927; phage(gi428782222)3.05e-32Showinfo_outline
8complement(4947452..4947565)Uncharacterised protein; NCTC13701_049280.0Showinfo_outline
9complement(4947669..4948196)PHAGE_Entero_933W_NC_000924: putative DNA N-6-adenine-methyltransferase; NCTC13701_04929; phage(gi9632500)4.06e-71Showinfo_outline
10complement(4948193..4948351)PHAGE_Entero_933W_NC_000924: hypothetical protein; NCTC13701_04930; phage(gi9632478)3.07e-16Showinfo_outline
11complement(4948348..4949028)PHAGE_Cronob_ENT47670_NC_019927: exonuclease; NCTC13701_04931; phage(gi431810511)7.86e-148Showinfo_outline
12complement(4949025..4949870)PHAGE_Ralsto_RSK1_NC_022915: putative phage recombination protein; NCTC13701_04932; phage(gi560186064)2.61e-80Showinfo_outline
13complement(4949886..4950170)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13701_04933; phage(gi356870640)2.90e-52Showinfo_outline
14complement(4950259..4950453)Uncharacterised protein; NCTC13701_049340.0Showinfo_outline
154950882..4951085PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC13701_04935; phage(gi100018)5.32e-22Showinfo_outline
16complement(4951120..4951524)PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC13701_04936; phage(gi157166005)2.75e-66Showinfo_outline
17complement(4951521..4952189)PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC13701_04937; phage(gi157166006)7.18e-108Showinfo_outline
18complement(4952628..4953338)PHAGE_Entero_HK140_NC_019710: prophage repressor; NCTC13701_04938; phage(gi428781988)8.66e-129Showinfo_outline
19complement(4953455..4953616)Uncharacterised protein; NCTC13701_049390.0Showinfo_outline
204953714..4953935PHAGE_Entero_mEp213_NC_019720: CII protein; NCTC13701_04940; phage(gi428782643)7.99e-10Showinfo_outline
214954021..4954167Uncharacterised protein; NCTC13701_049410.0Showinfo_outline
224954160..4955245PHAGE_Erwini_phiEt88_NC_015295: phage replication protein O; NCTC13701_04942; phage(gi327198609)1.34e-110Showinfo_outline
234955242..4956615PHAGE_Erwini_phiEt88_NC_015295: Replicative DNA helicase; NCTC13701_04943; phage(gi327198610)0.0Showinfo_outline
244956605..4956919PHAGE_Entero_SfI_NC_027339: Ren protein; NCTC13701_04944; phage(gi849250273)5.82e-29Showinfo_outline
254956916..4957362PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC13701_04945; phage(gi514051016)1.66e-21Showinfo_outline
264957359..4957553PHAGE_Pseudo_F8_NC_007810: hypothetical protein ORF085; NCTC13701_04946; phage(gi149408398)1.88e-07Showinfo_outline
274957550..4958011Uncharacterised protein; NCTC13701_049470.0Showinfo_outline
284958175..4958468PHAGE_Salmon_SETP13_NC_022752: EaA protein; NCTC13701_04948; phage(gi557307718)3.01e-11Showinfo_outline
294958852..4959250Uncharacterised protein; NCTC13701_049490.0Showinfo_outline
304959765..4960913PROPHAGE_Escher_Sakai: putative transposase; NCTC13701_04950; phage(gi38704244)0.0Showinfo_outline
314961603..4961908PHAGE_Escher_HK639_NC_016158: DNA pol III theta; NCTC13701_04951; phage(gi356870660)3.11e-19Showinfo_outline
324961974..4962570PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC13701_04952; phage(gi423262437)1.42e-62Showinfo_outline
334962570..4962743PHAGE_Escher_HK639_NC_016158: NinE; NCTC13701_04953; phage(gi356870663)6.75e-15Showinfo_outline
344962740..4963408PHAGE_Entero_HK225_NC_019717: NinI protein; NCTC13701_04954; phage(gi428782438)5.19e-137Showinfo_outline
354963401..4964036PHAGE_Entero_phi80_NC_021190: DNA junction-specific endonuclease Rap; NCTC13701_04955; phage(gi824479632)1.21e-113Showinfo_outline
364964033..4964173PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; NCTC13701_04956; phage(gi169257245)9.06e-13Showinfo_outline
374964170..4964670PHAGE_Escher_HK639_NC_016158: Q antitermination protein; NCTC13701_04957; phage(gi356870666)1.89e-113Showinfo_outline
384965153..4965467PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC13701_04958; phage(gi423262443)5.43e-62Showinfo_outline
394965470..4965973PHAGE_Salmon_vB_SemP_Emek_NC_018275: lysin; NCTC13701_04959; phage(gi399498856)1.18e-97Showinfo_outline
404965970..4966437PHAGE_Salmon_HK620_NC_002730: endopeptidase; NCTC13701_04960; phage(gi13559860)1.76e-76Showinfo_outline
414966440..4966577Uncharacterised protein; NCTC13701_049610.0Showinfo_outline
424966646..4966789Uncharacterised protein; NCTC13701_049620.0Showinfo_outline
434966912..4967106Uncharacterised protein; NCTC13701_049630.0Showinfo_outline
444967114..4967533PHAGE_Entero_ES18_NC_006949: gp1; NCTC13701_04964; phage(gi62362214)2.73e-73Showinfo_outline
454967530..4968828PHAGE_Salmon_SPN3UB_NC_019545: terminase large subunit; NCTC13701_04965; phage(gi423262379)0.0Showinfo_outline
464968841..4970310PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13701_04966; phage(gi431810500)0.0Showinfo_outline
474970342..4971250PHAGE_Cronob_ENT47670_NC_019927: phage head morphogenesis; NCTC13701_04967; phage(gi431810507)4.28e-151Showinfo_outline
484971961..4973316PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13701_04968; phage(gi431810499)2.04e-161Showinfo_outline
494973316..4973777PHAGE_Salmon_II_E1_NC_010495: putative capsid decoration protein; NCTC13701_04969; phage(gi170676292)1.38e-39Showinfo_outline
504973774..4974829PHAGE_Salmon_II_E1_NC_010495: putative coat protein; NCTC13701_04970; phage(gi170676293)9.10e-128Showinfo_outline
514974862..4975107Uncharacterised protein; NCTC13701_049710.0Showinfo_outline
524975110..4975490PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13701_04972; phage(gi431810531)2.57e-40Showinfo_outline
534975490..4975663PHAGE_Entero_ES18_NC_006949: gp12; NCTC13701_04973; phage(gi62362225)2.28e-17Showinfo_outline
544975663..4976025PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; NCTC13701_04974; phage(gi971749596)7.50e-27Showinfo_outline
554976028..4976453PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC13701_04975; phage(gi514050969)4.48e-39Showinfo_outline
564976450..4976842PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13701_04976; phage(gi431810530)1.78e-43Showinfo_outline
574976911..4977663PHAGE_Cronob_ENT47670_NC_019927: major tail subunit; NCTC13701_04977; phage(gi431810520)5.02e-42Showinfo_outline
584977716..4978393PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13701_04978; phage(gi431810508)4.34e-97Showinfo_outline
594978572..4979129PHAGE_Shigel_POCJ13_NC_025434: Rha protein; NCTC13701_04979; phage(gi725949745)2.02e-113Showinfo_outline
604979241..4979810Uncharacterised protein; NCTC13701_049800.0Showinfo_outline
614980133..4980408Uncharacterised protein; NCTC13701_049810.0Showinfo_outline
624980495..4981523Uncharacterised protein; NCTC13701_049820.0Showinfo_outline
634981590..4985111PHAGE_Vibrio_pYD38_A_NC_021534: tail length tape measure protein; NCTC13701_04983; phage(gi514051037)0.0Showinfo_outline
64complement(4985316..4985486)ATP-NAD/AcoX kinase; NCTC13701_049840.0Showinfo_outline
654985599..4986075PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13701_04985; phage(gi431810519)9.15e-50Showinfo_outline
664986075..4986545PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13701_04986; phage(gi431810518)4.73e-35Showinfo_outline
674986542..4986937PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13701_04987; phage(gi431810526)1.18e-45Showinfo_outline
684986924..4988480PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC13701_04988; phage(gi431810495)1.69e-110Showinfo_outline
694988777..4989415PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC13701_04989; phage(gi431810495)1.50e-49Showinfo_outline
704989490..4990137PHAGE_Klebsi_vB_KpnM_KB57_NC_028659: hypothetical protein; NCTC13701_04990; phage(gi966203354)4.57e-09Showinfo_outline
714990350..4991120PHAGE_Staphy_phiRS7_NC_022914: tail fiber protein; NCTC13701_04991; phage(gi560185974)2.86e-09Showinfo_outline
72complement(4991320..4991880)Uncharacterised protein; NCTC13701_049920.0Showinfo_outline
73complement(4992096..4993244)PROPHAGE_Escher_Sakai: putative transposase; NCTC13701_04993; phage(gi38704244)0.0Showinfo_outline

Region 7, total 15 CDS

#CDS PositionBLAST HitE-ValueSequence
15036153..5036164attL0.0Showinfo_outline
25051115..5051390PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_05066; phage(gi46401643)2.11e-58Showinfo_outline
35051435..5051812PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13701_05067; phage(gi557307573)1.78e-81Showinfo_outline
4complement(5052047..5056906)PHAGE_Synech_ACG_2014b_NC_027130: helicase; NCTC13701_05068; phage(gi827047942)1.17e-12Showinfo_outline
5complement(5057323..5058000)PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; NCTC13701_05069; phage(gi41057343)5.79e-158Showinfo_outline
6complement(5058193..5058495)PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; NCTC13701_05070; phage(gi24373865)1.91e-09Showinfo_outline
7complement(5059033..5059410)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13701_05071; phage(gi557307573)1.78e-81Showinfo_outline
8complement(5060012..5060230)Uncharacterised protein; NCTC13701_050720.0Showinfo_outline
9complement(5060880..5061257)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13701_05073; phage(gi557307573)1.57e-81Showinfo_outline
10complement(5061302..5061577)PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_05074; phage(gi46401643)2.11e-58Showinfo_outline
115061863..5062102RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE); NCTC13701_050750.0Showinfo_outline
125062102..5062389RelE/StbE replicon stabilization toxin; NCTC13701_050760.0Showinfo_outline
135062461..5062619PHAGE_Entero_933W_NC_000924: host killer protein; NCTC13701_05077; phage(gi9632541)2.87e-08Showinfo_outline
14complement(5063735..5064310)PHAGE_Ralsto_RSM3_NC_011399: hypothetical protein; NCTC13701_05078; phage(gi209901327)2.10e-61Showinfo_outline
155073358..5073369attR0.0Showinfo_outline

Region 8, total 39 CDS

#CDS PositionBLAST HitE-ValueSequence
15204586..5204608attL0.0Showinfo_outline
2complement(5214242..5214619)PHAGE_Entero_P1_NC_005856: InsB; NCTC13701_05208; phage(gi46401642)2.97e-82Showinfo_outline
35214636..5214670attL0.0Showinfo_outline
4complement(5214664..5214939)PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_05209; phage(gi46401643)1.87e-59Showinfo_outline
5complement(5215247..5215798)colanic acid capsular biosynthesis activation protein A; NCTC13701_052100.0Showinfo_outline
6complement(5216188..5216775)putative response regulator; NCTC13701_052110.0Showinfo_outline
7complement(5217157..5217534)PHAGE_Entero_P1_NC_005856: InsB; NCTC13701_05212; phage(gi46401642)2.97e-82Showinfo_outline
8complement(5217579..5217854)PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_05213; phage(gi46401643)7.08e-59Showinfo_outline
95218138..5218791uncharacterised protein encoded within prophage; NCTC13701_052140.0Showinfo_outline
10complement(5218869..5219141)PROPHAGE_Ralsto_GMI1000: isrso11-transposase orfb protein; NCTC13701_05215; phage(gi17546155)8.12e-31Showinfo_outline
115219440..5219451attL0.0Showinfo_outline
12complement(5219562..5219834)PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_05216; phage(gi46401643)1.16e-20Showinfo_outline
135219966..5220178PROPHAGE_Ralsto_GMI1000: isrso12-transposase orfa protein; NCTC13701_05217; phage(gi17546157)1.08e-15Showinfo_outline
145221815..5222237PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; NCTC13701_05219; phage(gi17546158)6.64e-59Showinfo_outline
155222316..5222822PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; NCTC13701_05220; phage(gi431811050)6.88e-69Showinfo_outline
165222901..5223053RelB/StbD; NCTC13701_052210.0Showinfo_outline
17complement(5223729..5224700)PHAGE_Entero_P1_NC_005856: ParB; NCTC13701_05222; phage(gi46401681)4.59e-11Showinfo_outline
18complement(5224700..5225866)PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; NCTC13701_05223; phage(gi46402111)0.0Showinfo_outline
195226596..5227606PHAGE_Entero_P1_NC_005856: RepA; NCTC13701_05224; phage(gi46401683)2.50e-90Showinfo_outline
20complement(5228428..5228544)site-specific recombinase, phage integrase family; NCTC13701_052250.0Showinfo_outline
215228688..5228699attR0.0Showinfo_outline
22complement(5228699..5229067)site-specific recombinase, phage integrase family; NCTC13701_052260.0Showinfo_outline
23complement(5229926..5230462)putative plasmid transfer protein; NCTC13701_052270.0Showinfo_outline
24complement(5230450..5230566)Uncharacterised protein; NCTC13701_052280.0Showinfo_outline
25complement(5230673..5231149)PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; NCTC13701_05229; phage(gi17546158)9.07e-72Showinfo_outline
26complement(5232786..5232998)PROPHAGE_Ralsto_GMI1000: isrso12-transposase orfa protein; NCTC13701_05231; phage(gi17546157)1.08e-15Showinfo_outline
275233916..5234170Uncharacterised protein; NCTC13701_052320.0Showinfo_outline
285234157..5234399Uncharacterised protein; NCTC13701_052330.0Showinfo_outline
295234447..5234914Uncharacterised protein; NCTC13701_052340.0Showinfo_outline
305234924..5235331Uncharacterised protein; NCTC13701_052350.0Showinfo_outline
315235374..5235892putative DNA replication terminus site-binding protein; NCTC13701_052360.0Showinfo_outline
325236014..5236337putative DNA replication terminus site-binding protein; NCTC13701_052370.0Showinfo_outline
335236334..5237092Uncharacterised protein; NCTC13701_052380.0Showinfo_outline
34complement(5237121..5237498)PHAGE_Entero_P1_NC_005856: InsB; NCTC13701_05239; phage(gi46401642)2.97e-82Showinfo_outline
355237515..5237549attR0.0Showinfo_outline
36complement(5237543..5237818)PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_05240; phage(gi46401643)1.87e-59Showinfo_outline
375238404..5238721Uncharacterised protein; NCTC13701_052410.0Showinfo_outline
38complement(5238787..5239923)PHAGE_Entero_P1_NC_005856: Cre; NCTC13701_05242; phage(gi46401628)6.13e-22Showinfo_outline
395251555..5251577attR0.0Showinfo_outline

Region 9, total 52 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(5346505..5348562)PHAGE_Gordon_Hedwig_NC_031099: RNA polymerase binding protein; NCTC13701_05370; phage(gi100054)1.05e-06Showinfo_outline
2complement(5348632..5348880)Bacterial protein of uncharacterised function (DUF905); NCTC13701_053710.0Showinfo_outline
3complement(5348929..5349471)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC13701_05372; phage(gi100049)1.06e-62Showinfo_outline
45351070..5352344PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC13701_05374; phage(gi100001)5.75e-142Showinfo_outline
55352388..5352401attL0.0Showinfo_outline
6complement(5352608..5352925)Uncharacterised protein; NCTC13701_053760.0Showinfo_outline
7complement(5352960..5353214)PHAGE_Entero_P1_NC_005856: Hot; NCTC13701_05377; phage(gi46401721)2.82e-23Showinfo_outline
8complement(5353399..5353590)Uncharacterised protein; NCTC13701_053780.0Showinfo_outline
9complement(5353633..5354139)PHAGE_Rhodoc_CosmicSans_NC_028677: ArdA; NCTC13701_05379; phage(gi966199624)1.84e-12Showinfo_outline
10complement(5354182..5354421)putative antirestriction protein; NCTC13701_053800.0Showinfo_outline
11complement(5354418..5354609)PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; NCTC13701_05381; phage(gi162135127)5.12e-06Showinfo_outline
12complement(5355114..5355881)Uncharacterised protein; NCTC13701_053820.0Showinfo_outline
13complement(5355935..5356354)Protein of uncharacterised function (DUF1380); NCTC13701_053830.0Showinfo_outline
14complement(5356364..5356585)PHAGE_Entero_N15_NC_001901: gp50; NCTC13701_05384; phage(gi9630517)6.40e-06Showinfo_outline
15complement(5356585..5357286)PHAGE_Staphy_Stau2_NC_030933: hypothetical protein; NCTC13701_05385; phage(gi100063)3.58e-27Showinfo_outline
16complement(5357673..5358008)Uncharacterised protein; NCTC13701_053860.0Showinfo_outline
17complement(5358005..5358238)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; NCTC13701_05387; phage(gi410491514)1.97e-05Showinfo_outline
18complement(5358273..5358407)Uncharacterised protein; NCTC13701_053880.0Showinfo_outline
19complement(5358845..5359075)Uncharacterised protein; NCTC13701_053890.0Showinfo_outline
20complement(5359139..5359810)mediator of plasmid stability; NCTC13701_053900.0Showinfo_outline
21complement(5359813..5360784)PHAGE_Entero_P88_NC_026014: recombinase; NCTC13701_05391; phage(gi744692717)9.24e-78Showinfo_outline
22complement(5361033..5362517)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC13701_05392; phage(gi100001)1.85e-33Showinfo_outline
235362925..5363356PHAGE_Cronob_ENT39118_NC_019934: protein umuD; NCTC13701_05394; phage(gi431811072)1.02e-34Showinfo_outline
245363356..5364627PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; NCTC13701_05395; phage(gi431811050)0.0Showinfo_outline
255365039..5365914PHAGE_Entero_P1_NC_005856: RepA; NCTC13701_05396; phage(gi46401683)1.41e-109Showinfo_outline
265366539..5367165PHAGE_Sodali_phiSG1_NC_007902: ParA-like protein; NCTC13701_05397; phage(gi89886027)1.10e-30Showinfo_outline
275368739..5369494PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC13701_05399; phage(gi100001)5.35e-85Showinfo_outline
285369738..5370406PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC13701_05400; phage(gi100001)2.74e-51Showinfo_outline
295370611..5370919Uncharacterised protein; NCTC13701_054020.0Showinfo_outline
30complement(5371020..5371181)PHAGE_Pectob_ZF40_NC_019522: putative DNA polymerase; NCTC13701_05403; phage(gi422936677)3.40e-10Showinfo_outline
31complement(5371150..5371275)putative inner membrane protein; NCTC13701_054040.0Showinfo_outline
32complement(5371460..5371651)Uncharacterised protein; NCTC13701_054050.0Showinfo_outline
33complement(5371694..5372200)PHAGE_Rhodoc_CosmicSans_NC_028677: ArdA; NCTC13701_05406; phage(gi966199624)1.84e-12Showinfo_outline
34complement(5372243..5372482)putative antirestriction protein; NCTC13701_054070.0Showinfo_outline
35complement(5372479..5372670)PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; NCTC13701_05408; phage(gi162135127)5.12e-06Showinfo_outline
36complement(5373175..5373942)Uncharacterised protein; NCTC13701_054090.0Showinfo_outline
37complement(5373996..5374415)Protein of uncharacterised function (DUF1380); NCTC13701_054100.0Showinfo_outline
38complement(5374425..5374646)PHAGE_Entero_N15_NC_001901: gp50; NCTC13701_05411; phage(gi9630517)6.40e-06Showinfo_outline
39complement(5374646..5375347)PHAGE_Staphy_Stau2_NC_030933: hypothetical protein; NCTC13701_05412; phage(gi100063)3.58e-27Showinfo_outline
40complement(5375733..5376068)Uncharacterised protein; NCTC13701_054130.0Showinfo_outline
41complement(5376065..5376298)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; NCTC13701_05414; phage(gi410491514)1.97e-05Showinfo_outline
42complement(5376283..5376468)Uncharacterised protein; NCTC13701_054150.0Showinfo_outline
43complement(5376906..5377136)Uncharacterised protein; NCTC13701_054160.0Showinfo_outline
44complement(5377200..5377871)mediator of plasmid stability; NCTC13701_054170.0Showinfo_outline
45complement(5377874..5378845)PHAGE_Entero_P88_NC_026014: recombinase; NCTC13701_05418; phage(gi744692717)9.24e-78Showinfo_outline
46complement(5379094..5380578)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC13701_05419; phage(gi100001)1.85e-33Showinfo_outline
475380987..5381418PHAGE_Cronob_ENT39118_NC_019934: protein umuD; NCTC13701_05421; phage(gi431811072)1.02e-34Showinfo_outline
485381418..5382689PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; NCTC13701_05422; phage(gi431811050)0.0Showinfo_outline
495383101..5383976PHAGE_Entero_P1_NC_005856: RepA; NCTC13701_05423; phage(gi46401683)1.41e-109Showinfo_outline
505384601..5385227PHAGE_Sodali_phiSG1_NC_007902: ParA-like protein; NCTC13701_05424; phage(gi89886027)1.10e-30Showinfo_outline
51complement(5385998..5386801)PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; NCTC13701_05425; phage(gi764159894)6.18e-07Showinfo_outline
525398549..5398562attR0.0Showinfo_outline

Region 10, total 34 CDS

#CDS PositionBLAST HitE-ValueSequence
15498857..5498870attL0.0Showinfo_outline
2complement(5505671..5506195)PHAGE_Mycoba_Adler_NC_023591: hypothetical protein; NCTC13701_05556; phage(gi589892236)1.08e-12Showinfo_outline
3complement(5506719..5507279)PHAGE_Sodali_phiSG1_NC_007902: ProP protein; NCTC13701_05557; phage(gi89886011)6.13e-05Showinfo_outline
45507693..5507968PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_05558; phage(gi46401643)1.87e-59Showinfo_outline
55508013..5508390PHAGE_Entero_P1_NC_005856: InsB; NCTC13701_05559; phage(gi46401642)2.97e-82Showinfo_outline
6complement(5508325..5509692)putative transporter; NCTC13701_055600.0Showinfo_outline
7complement(5510400..5510777)PHAGE_Entero_P1_NC_005856: InsB; NCTC13701_05561; phage(gi46401642)2.97e-82Showinfo_outline
8complement(5510822..5511097)PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_05562; phage(gi46401643)1.23e-59Showinfo_outline
95511373..5511738PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; NCTC13701_05563; phage(gi17546153)8.44e-59Showinfo_outline
105511696..5512601PROPHAGE_Escher_CFT073: insertion element IS2 transposase InsD; NCTC13701_05564; phage(gi26249446)0.0Showinfo_outline
115512762..5512884PROPHAGE_Ralsto_GMI1000: isrso12-transposase orfa protein; NCTC13701_05565; phage(gi17546157)2.57e-11Showinfo_outline
12complement(5513079..5513939)conserved hypothetical signal peptide protein; NCTC13701_055660.0Showinfo_outline
13complement(5514046..5514663)PHAGE_Entero_phi80_NC_021190: DNA invertase, resolvase, site-specific recombinase Pin; NCTC13701_05567; phage(gi824479608)1.00e-28Showinfo_outline
14complement(5514782..5517715)PROPHAGE_Xantho_33913: Tn5041 transposase; NCTC13701_05568; phage(gi21231545)3.09e-29Showinfo_outline
155517843..5518298TonB-dependent siderophore receptor; NCTC13701_055690.0Showinfo_outline
165518355..5518615inner membrane protein; NCTC13701_055700.0Showinfo_outline
175518761..5518787attL0.0Showinfo_outline
185518804..5519079PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_05571; phage(gi46401643)4.36e-61Showinfo_outline
195519233..5519499PHAGE_Entero_P1_NC_005856: InsB; NCTC13701_05572; phage(gi46401642)1.28e-56Showinfo_outline
20complement(5519720..5520031)galactoside permease; NCTC13701_055730.0Showinfo_outline
21complement(5520073..5520450)PHAGE_Entero_P1_NC_005856: InsB; NCTC13701_05574; phage(gi46401642)2.97e-82Showinfo_outline
22complement(5520495..5520770)PHAGE_Entero_P1_NC_005856: InsA; NCTC13701_05575; phage(gi46401643)1.23e-59Showinfo_outline
235521496..5522506putative alginate lyase; NCTC13701_055760.0Showinfo_outline
24complement(5522598..5523479)PROPHAGE_Escher_MG1655: IS2 transposase TnpB; NCTC13701_05577; phage(gi16132094)5.29e-131Showinfo_outline
25complement(5523437..5523745)PROPHAGE_Escher_CFT073: transposase insC; NCTC13701_05578; phage(gi26251004)3.86e-35Showinfo_outline
265523817..5524578transposase-like protein; NCTC13701_055790.0Showinfo_outline
27complement(5524677..5524850)PROPHAGE_Escher_CFT073: transposase insC; NCTC13701_05580; phage(gi26250372)1.83e-33Showinfo_outline
28complement(5524998..5525450)Peroxide operon regulator; NCTC13701_055810.0Showinfo_outline
295525548..5526246metal chaperone; NCTC13701_055820.0Showinfo_outline
305526203..5526529metal chaperone; NCTC13701_055830.0Showinfo_outline
315527124..5527411site-specific recombinase, phage integrase family; NCTC13701_055840.0Showinfo_outline
325527755..5528039PHAGE_Entero_P1_NC_005856: Cre; NCTC13701_05585; phage(gi46401628)1.14e-08Showinfo_outline
335528964..5528990attR0.0Showinfo_outline
345542515..5542528attR0.0Showinfo_outline

Region 11, total 43 CDS

#CDS PositionBLAST HitE-ValueSequence
15543256..5543268attL0.0Showinfo_outline
25545630..5549151PHAGE_Vibrio_pYD38_A_NC_021534: tail length tape measure protein; NCTC13701_05607; phage(gi514051037)0.0Showinfo_outline
3complement(5549356..5549526)ATP-NAD/AcoX kinase; NCTC13701_056080.0Showinfo_outline
45549639..5550115PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13701_05609; phage(gi431810519)9.15e-50Showinfo_outline
55550115..5550585PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13701_05610; phage(gi431810518)4.73e-35Showinfo_outline
65550582..5550977PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13701_05611; phage(gi431810526)1.18e-45Showinfo_outline
75550964..5553441PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC13701_05612; phage(gi431810495)0.0Showinfo_outline
85553528..5556056PHAGE_Staphy_phiRS7_NC_022914: tail fiber protein; NCTC13701_05613; phage(gi560185974)5.32e-08Showinfo_outline
9complement(5556136..5557284)PROPHAGE_Escher_Sakai: putative transposase; NCTC13701_05614; phage(gi38704244)0.0Showinfo_outline
10complement(5557970..5559064)PHAGE_Entero_mEp460_NC_019716: integrase; NCTC13701_05615; phage(gi428782338)4.20e-180Showinfo_outline
115559218..5559258attL0.0Showinfo_outline
12complement(5559336..5559590)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13701_05616; phage(gi428782341)2.00e-23Showinfo_outline
13complement(5559587..5559757)PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; NCTC13701_05617; phage(gi100049)3.73e-07Showinfo_outline
14complement(5559754..5559927)PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC13701_05618; phage(gi157165988)1.54e-17Showinfo_outline
15complement(5559894..5560052)PHAGE_Escher_TL_2011b_NC_019445: hypothetical protein; NCTC13701_05619; phage(gi418487639)1.38e-14Showinfo_outline
16complement(5560049..5560219)PHAGE_Serrat_Eta_NC_021563: hypothetical protein; NCTC13701_05620; phage(gi514361067)2.40e-15Showinfo_outline
17complement(5560216..5560380)PHAGE_Serrat_Eta_NC_021563: hypothetical protein; NCTC13701_05621; phage(gi514361067)1.60e-16Showinfo_outline
18complement(5560377..5560649)PHAGE_Entero_HK446_NC_019714: hypothetical protein; NCTC13701_05622; phage(gi428782222)3.05e-32Showinfo_outline
19complement(5560646..5560759)Uncharacterised protein; NCTC13701_056230.0Showinfo_outline
20complement(5560863..5561390)PHAGE_Entero_933W_NC_000924: putative DNA N-6-adenine-methyltransferase; NCTC13701_05624; phage(gi9632500)4.06e-71Showinfo_outline
21complement(5561387..5561545)PHAGE_Entero_933W_NC_000924: hypothetical protein; NCTC13701_05625; phage(gi9632478)3.07e-16Showinfo_outline
22complement(5561542..5562222)PHAGE_Cronob_ENT47670_NC_019927: exonuclease; NCTC13701_05626; phage(gi431810511)7.86e-148Showinfo_outline
23complement(5562219..5563064)PHAGE_Ralsto_RSK1_NC_022915: putative phage recombination protein; NCTC13701_05627; phage(gi560186064)2.61e-80Showinfo_outline
24complement(5563080..5563364)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13701_05628; phage(gi356870640)2.90e-52Showinfo_outline
25complement(5563453..5563647)Uncharacterised protein; NCTC13701_056290.0Showinfo_outline
265564076..5564399PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC13701_05630; phage(gi100018)6.35e-22Showinfo_outline
27complement(5565935..5566534)PHAGE_Entero_HK140_NC_019710: prophage repressor; NCTC13701_05631; phage(gi428781988)1.27e-101Showinfo_outline
285567421..5567921PHAGE_Vibrio_pYD38_A_NC_021534: tail length tape measure protein; NCTC13701_05632; phage(gi514051037)3.89e-48Showinfo_outline
295569162..5570946PHAGE_Entero_ES18_NC_006949: gp21; NCTC13701_05633; phage(gi62362234)3.18e-111Showinfo_outline
30complement(5571151..5571321)ATP-NAD/AcoX kinase; NCTC13701_056340.0Showinfo_outline
315571433..5571666PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13701_05635; phage(gi431810519)1.61e-21Showinfo_outline
325571677..5571910PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13701_05636; phage(gi431810519)1.35e-15Showinfo_outline
335572380..5572775PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13701_05637; phage(gi431810526)1.18e-45Showinfo_outline
345572762..5573106PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC13701_05638; phage(gi431810495)1.40e-09Showinfo_outline
355573081..5573770PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC13701_05639; phage(gi431810495)1.05e-49Showinfo_outline
365574141..5574386PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC13701_05640; phage(gi431810495)1.62e-20Showinfo_outline
375574358..5574879PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC13701_05641; phage(gi431810495)5.27e-41Showinfo_outline
385574881..5575246PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC13701_05642; phage(gi431810495)6.53e-31Showinfo_outline
395575326..5577863PHAGE_Staphy_phiRS7_NC_022914: tail fiber protein; NCTC13701_05643; phage(gi560185974)5.30e-08Showinfo_outline
40complement(5577943..5579091)PROPHAGE_Escher_Sakai: putative transposase; NCTC13701_05644; phage(gi38704244)0.0Showinfo_outline
41complement(5579777..5580871)PHAGE_Entero_mEp460_NC_019716: integrase; NCTC13701_05645; phage(gi428782338)4.20e-180Showinfo_outline
425581025..5581065attR0.0Showinfo_outline
435592997..5593009attR0.0Showinfo_outline
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5603228 bps
Phages: 11
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

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